Wall clock time and date at job start Sat Apr 11 2020 06:05:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86802 * 120.00249 * 2 1 4 4 H 1.48492 * 109.47335 * 267.66684 * 3 2 1 5 5 H 1.48503 * 109.46851 * 27.67021 * 3 2 1 6 6 H 1.48497 * 109.47245 * 147.66622 * 3 2 1 7 7 C 1.38816 * 120.00081 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99627 * 338.00829 * 7 2 1 9 9 N 1.36937 * 120.00319 * 158.01278 * 7 2 1 10 10 C 1.46884 * 120.46819 * 149.70287 * 9 7 2 11 11 C 1.53363 * 108.74388 * 124.38347 * 10 9 7 12 12 C 1.52561 * 109.12085 * 52.26514 * 11 10 9 13 13 C 1.52962 * 114.06283 * 75.54054 * 12 11 10 14 14 N 1.47160 * 87.84981 * 139.43632 * 13 12 11 15 15 C 1.34780 * 135.99497 * 153.33652 * 14 13 12 16 16 O 1.21608 * 120.00110 * 359.97438 * 15 14 13 17 17 C 1.47396 * 119.99742 * 180.02562 * 15 14 13 18 18 N 1.31568 * 126.82319 * 359.68652 * 17 15 14 19 19 N 1.28381 * 111.96769 * 179.80730 * 18 17 15 20 20 H 0.97000 * 124.37892 * 180.19649 * 19 18 17 21 21 C 1.37052 * 111.25371 * 0.47817 * 19 18 17 22 22 C 1.39122 * 134.72796 * 179.75108 * 21 19 18 23 23 C 1.36679 * 119.78515 * 180.02562 * 22 21 19 24 24 C 1.38907 * 120.89684 * 359.95215 * 23 22 21 25 25 C 1.36710 * 120.51737 * 0.02562 * 24 23 22 26 26 C 1.39192 * 119.51440 * 359.97438 * 25 24 23 27 27 C 1.47163 * 88.00345 * 333.59504 * 14 13 12 28 28 C 1.52550 * 113.43175 * 302.66607 * 12 11 10 29 29 C 1.46892 * 120.45873 * 329.72432 * 9 7 2 30 30 H 0.96994 * 119.99773 * 0.02562 * 1 2 3 31 31 H 1.09004 * 109.58984 * 4.60853 * 10 9 7 32 32 H 1.09003 * 109.59808 * 244.16633 * 10 9 7 33 33 H 1.08998 * 109.52909 * 292.37263 * 11 10 9 34 34 H 1.09001 * 109.58513 * 172.19041 * 11 10 9 35 35 H 1.08992 * 113.48853 * 24.69236 * 13 12 11 36 36 H 1.09003 * 113.48620 * 254.18197 * 13 12 11 37 37 H 1.07999 * 120.10699 * 359.97438 * 22 21 19 38 38 H 1.08009 * 119.55357 * 179.97438 * 23 22 21 39 39 H 1.07995 * 119.74047 * 180.02562 * 24 23 22 40 40 H 1.08004 * 120.24296 * 179.97438 * 25 24 23 41 41 H 1.08998 * 113.49155 * 141.16019 * 27 14 13 42 42 H 1.08997 * 113.48429 * 271.66315 * 27 14 13 43 43 H 1.08996 * 109.52895 * 177.22204 * 28 12 11 44 44 H 1.09007 * 109.53188 * 297.42773 * 28 12 11 45 45 H 1.09005 * 109.59134 * 355.38460 * 29 9 7 46 46 H 1.09000 * 109.59144 * 115.82344 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.5471 2.0179 -1.3988 5 1 1.4239 2.6664 0.6502 6 1 3.5222 1.4549 0.7488 7 6 2.0103 -1.2022 0.0005 8 1 1.5292 -2.1033 0.3512 9 7 3.3049 -1.2456 -0.4434 10 6 4.2506 -2.2224 0.1124 11 6 4.8403 -3.0472 -1.0382 12 6 5.3936 -2.1007 -2.0992 13 6 6.7232 -1.4469 -1.7194 14 7 7.1579 -1.6521 -3.1103 15 6 8.0261 -1.0574 -3.9524 16 8 8.6721 -0.0964 -3.5810 17 6 8.1917 -1.5713 -5.3239 18 7 7.5695 -2.5982 -5.8618 19 7 7.9282 -2.7934 -7.0789 20 1 7.5807 -3.4997 -7.6458 21 6 8.8700 -1.8787 -7.4720 22 6 9.5781 -1.6457 -8.6467 23 6 10.4735 -0.6148 -8.7066 24 6 10.6880 0.2084 -7.6085 25 6 10.0053 0.0019 -6.4422 26 6 9.0888 -1.0424 -6.3598 27 6 6.2240 -2.7873 -3.1804 28 6 4.3541 -1.1261 -2.6440 29 6 3.7676 -0.3154 -1.4819 30 1 -0.4849 0.8400 -0.0004 31 1 3.7289 -2.8826 0.8054 32 1 5.0514 -1.6995 0.6352 33 1 4.0609 -3.6704 -1.4767 34 1 5.6433 -3.6800 -0.6601 35 1 7.2991 -2.0226 -0.9949 36 1 6.6279 -0.3964 -1.4445 37 1 9.4214 -2.2779 -9.5082 38 1 11.0215 -0.4375 -9.6203 39 1 11.3996 1.0179 -7.6766 40 1 10.1758 0.6444 -5.5910 41 1 5.7080 -2.8669 -4.1372 42 1 6.6627 -3.7313 -2.8573 43 1 4.8265 -0.4509 -3.3575 44 1 3.5577 -1.6818 -3.1391 45 1 2.9277 0.2806 -1.8393 46 1 4.5346 0.3403 -1.0699 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050744059.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:33 Heat of formation + Delta-G solvation = 123.382033 kcal Electronic energy + Delta-G solvation = -29360.651980 eV Core-core repulsion = 25446.808545 eV Total energy + Delta-G solvation = -3913.843436 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.74554 -40.79167 -38.26675 -38.05603 -36.14181 -32.91741 -32.44503 -30.88985 -30.52092 -30.50013 -30.01826 -27.45930 -26.21433 -24.32227 -23.72345 -23.08528 -22.89550 -22.54700 -20.98796 -19.28131 -18.37432 -18.15594 -17.71030 -16.67892 -16.36720 -16.14423 -15.89039 -15.56177 -15.47293 -15.10678 -14.45637 -14.24570 -14.11780 -13.83311 -13.74752 -13.52379 -13.12470 -12.80268 -12.52621 -12.42949 -12.33790 -12.08670 -11.75841 -11.71198 -11.62799 -11.48172 -11.19291 -10.72984 -10.57035 -10.45060 -10.41627 -10.26263 -9.95436 -9.81232 -9.62080 -9.46045 -9.10984 -8.70461 -8.53886 -8.37666 -6.91463 -5.95080 -3.31113 0.52946 1.03702 1.66841 2.34803 2.78350 3.15581 3.35878 3.51655 3.52010 3.55785 3.98849 4.16226 4.35106 4.47995 4.55874 4.65228 4.77962 4.92659 5.02633 5.04984 5.10566 5.18113 5.30023 5.40726 5.42458 5.49077 5.60402 5.63700 5.77304 5.79660 5.87993 5.93493 5.97174 6.06796 6.12602 6.19574 6.20193 6.33120 6.38945 6.46746 6.48988 6.65443 6.68190 6.70808 6.74401 6.94915 7.47462 7.71090 8.01181 8.12771 8.35472 8.97273 9.74077 10.13246 11.20962 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019798 B = 0.002662 C = 0.002570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.961624 B =10517.467812 C =10890.903017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.027 3.973 3 Si 0.878 3.122 4 H -0.286 1.286 5 H -0.303 1.303 6 H -0.272 1.272 7 C -0.261 4.261 8 H 0.084 0.916 9 N -0.604 5.604 10 C 0.148 3.852 11 C -0.116 4.116 12 C -0.080 4.080 13 C 0.115 3.885 14 N -0.629 5.629 15 C 0.629 3.371 16 O -0.534 6.534 17 C 0.015 3.985 18 N -0.200 5.200 19 N -0.417 5.417 20 H 0.447 0.553 21 C 0.064 3.936 22 C -0.121 4.121 23 C -0.084 4.084 24 C -0.142 4.142 25 C -0.042 4.042 26 C -0.110 4.110 27 C 0.111 3.889 28 C -0.106 4.106 29 C 0.130 3.870 30 H 0.262 0.738 31 H 0.065 0.935 32 H 0.023 0.977 33 H 0.070 0.930 34 H 0.059 0.941 35 H 0.086 0.914 36 H 0.081 0.919 37 H 0.128 0.872 38 H 0.131 0.869 39 H 0.130 0.870 40 H 0.139 0.861 41 H 0.083 0.917 42 H 0.084 0.916 43 H 0.054 0.946 44 H 0.071 0.929 45 H 0.075 0.925 46 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.632 -7.053 -17.108 27.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.172 4.172 3 Si 0.708 3.292 4 H -0.213 1.213 5 H -0.231 1.231 6 H -0.197 1.197 7 C -0.389 4.389 8 H 0.101 0.899 9 N -0.328 5.328 10 C 0.022 3.978 11 C -0.156 4.156 12 C -0.081 4.081 13 C -0.007 4.007 14 N -0.363 5.363 15 C 0.417 3.583 16 O -0.409 6.409 17 C -0.157 4.157 18 N -0.029 5.029 19 N -0.136 5.136 20 H 0.292 0.708 21 C -0.049 4.049 22 C -0.143 4.143 23 C -0.104 4.104 24 C -0.161 4.161 25 C -0.062 4.062 26 C -0.117 4.117 27 C -0.012 4.012 28 C -0.145 4.145 29 C 0.004 3.996 30 H 0.072 0.928 31 H 0.084 0.916 32 H 0.041 0.959 33 H 0.089 0.911 34 H 0.078 0.922 35 H 0.104 0.896 36 H 0.099 0.901 37 H 0.146 0.854 38 H 0.149 0.851 39 H 0.148 0.852 40 H 0.157 0.843 41 H 0.101 0.899 42 H 0.102 0.898 43 H 0.073 0.927 44 H 0.090 0.910 45 H 0.093 0.907 46 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 20.172 -7.149 -16.757 27.181 hybrid contribution 0.806 1.047 -0.688 1.489 sum 20.977 -6.102 -17.445 27.957 Atomic orbital electron populations 1.69853 1.05817 1.26617 1.52562 1.25341 0.95162 0.97580 0.99161 0.87035 0.79984 0.84743 0.77469 1.21347 1.23080 1.19713 1.18880 0.85808 0.94649 1.39598 0.89887 1.44326 1.08841 1.38738 1.40877 1.20936 0.92279 0.91485 0.93064 1.21870 0.99931 0.97080 0.96713 1.21682 0.93525 0.96965 0.95941 1.23150 0.92544 1.02562 0.82451 1.49374 1.39843 1.32667 1.14377 1.16062 0.78301 0.82393 0.81568 1.90801 1.46459 1.27263 1.76410 1.22702 1.00526 0.96661 0.95790 1.72994 1.19111 1.16495 0.94334 1.43081 1.33444 1.27832 1.09238 0.70799 1.19212 0.95403 0.93479 0.96827 1.19773 0.98691 1.00776 0.95028 1.20758 0.96803 0.94007 0.98850 1.20862 1.01412 1.00881 0.92952 1.20442 0.92536 0.94776 0.98437 1.19426 1.00903 0.99187 0.92192 1.23166 0.87831 0.89762 1.00445 1.21707 0.96736 0.97411 0.98676 1.21336 0.97601 0.92172 0.88481 0.92775 0.91634 0.95894 0.91091 0.92209 0.89554 0.90085 0.85404 0.85097 0.85187 0.84322 0.89878 0.89806 0.92746 0.91005 0.90669 0.95936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.61 13.97 55.49 0.78 -26.83 16 2 C 0.03 0.77 5.17 -17.43 -0.09 0.68 16 3 Si 0.88 22.49 24.57 -169.99 -4.18 18.32 16 4 H -0.29 -7.10 6.44 56.52 0.36 -6.74 16 5 H -0.30 -7.90 7.11 56.52 0.40 -7.50 16 6 H -0.27 -6.92 7.11 56.52 0.40 -6.52 16 7 C -0.26 -7.14 9.97 -15.06 -0.15 -7.29 16 8 H 0.08 2.42 8.06 -52.49 -0.42 2.00 16 9 N -0.60 -13.88 2.68 -172.17 -0.46 -14.34 16 10 C 0.15 2.73 6.42 -3.64 -0.02 2.70 16 11 C -0.12 -1.69 5.31 -26.77 -0.14 -1.83 16 12 C -0.08 -1.18 0.83 -155.17 -0.13 -1.30 16 13 C 0.11 1.67 7.57 -8.20 -0.06 1.61 16 14 N -0.63 -9.30 3.46 -186.60 -0.65 -9.95 16 15 C 0.63 10.20 8.06 -12.53 -0.10 10.10 16 16 O -0.53 -9.97 17.18 5.27 0.09 -9.88 16 17 C 0.01 0.21 7.29 -80.76 -0.59 -0.38 16 18 N -0.20 -2.42 10.68 34.46 0.37 -2.06 16 19 N -0.42 -3.82 6.85 32.34 0.22 -3.60 16 20 H 0.45 2.33 8.96 -190.49 -1.71 0.62 16 21 C 0.06 0.64 7.38 -84.21 -0.62 0.02 16 22 C -0.12 -0.91 10.03 -39.82 -0.40 -1.31 16 23 C -0.08 -0.59 9.96 -39.90 -0.40 -0.98 16 24 C -0.14 -1.19 9.98 -39.89 -0.40 -1.59 16 25 C -0.04 -0.47 9.87 -39.78 -0.39 -0.87 16 26 C -0.11 -1.40 6.34 -105.05 -0.67 -2.07 16 27 C 0.11 1.41 6.92 -8.36 -0.06 1.35 16 28 C -0.11 -1.87 5.25 -26.78 -0.14 -2.01 16 29 C 0.13 2.80 4.14 -3.64 -0.02 2.79 16 30 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 31 H 0.07 1.20 7.92 -51.93 -0.41 0.79 16 32 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.06 0.70 8.10 -51.93 -0.42 0.28 16 35 H 0.09 1.09 8.06 -51.93 -0.42 0.67 16 36 H 0.08 1.31 7.53 -51.93 -0.39 0.92 16 37 H 0.13 0.58 8.06 -52.49 -0.42 0.15 16 38 H 0.13 0.54 8.06 -52.48 -0.42 0.12 16 39 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 40 H 0.14 1.64 7.65 -52.48 -0.40 1.24 16 41 H 0.08 1.05 7.50 -51.93 -0.39 0.66 16 42 H 0.08 0.91 8.09 -51.93 -0.42 0.49 16 43 H 0.05 0.94 7.95 -51.93 -0.41 0.53 16 44 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 45 H 0.08 1.81 4.66 -51.93 -0.24 1.57 16 46 H 0.02 0.49 6.92 -51.93 -0.36 0.13 16 LS Contribution 368.85 15.07 5.56 5.56 Total: -1.00 -34.25 368.85 -10.35 -44.60 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: -7.71 Total: -1.44 kcal Atomic # 6 Polarization: 3.99 SS G_CDS: -4.38 Total: -0.39 kcal Atomic # 7 Polarization: -57.04 SS G_CDS: 0.26 Total: -56.78 kcal Atomic # 8 Polarization: -9.97 SS G_CDS: 0.09 Total: -9.88 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -4.18 Total: 18.32 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -34.25 -10.35 -44.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050744059.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.984 kcal (2) G-P(sol) polarization free energy of solvation -34.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.602 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds