Wall clock time and date at job start Sat Apr 11 2020 06:05:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86798 * 119.99943 * 2 1 4 4 H 1.48495 * 109.47091 * 275.00057 * 3 2 1 5 5 H 1.48496 * 109.46989 * 34.99963 * 3 2 1 6 6 H 1.48499 * 109.47164 * 155.00122 * 3 2 1 7 7 C 1.38814 * 119.99631 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99854 * 145.34749 * 7 2 1 9 9 N 1.36937 * 120.00210 * 325.34576 * 7 2 1 10 10 C 1.44320 * 116.35326 * 4.67001 * 9 7 2 11 11 C 1.51607 * 113.11261 * 187.25898 * 10 9 7 12 12 C 1.52884 * 111.55433 * 320.91429 * 11 10 9 13 13 H 1.08997 * 112.85799 * 294.19410 * 12 11 10 14 14 C 1.56196 * 106.67443 * 168.35302 * 12 11 10 15 15 N 1.47765 * 104.00615 * 286.46434 * 14 12 11 16 16 C 1.34778 * 125.81896 * 154.05886 * 15 14 12 17 17 O 1.21582 * 120.00207 * 4.99498 * 16 15 14 18 18 C 1.47571 * 119.99718 * 184.99269 * 16 15 14 19 19 C 1.41760 * 120.01528 * 352.10580 * 18 16 15 20 20 C 1.35625 * 119.54069 * 180.02562 * 19 18 16 21 21 C 1.41168 * 119.50862 * 359.97438 * 20 19 18 22 22 N 1.32419 * 132.11595 * 180.38926 * 21 20 19 23 23 C 1.33600 * 109.22346 * 180.09501 * 22 21 20 24 24 C 1.34998 * 108.65930 * 359.56039 * 23 22 21 25 25 N 1.37013 * 107.14270 * 0.26099 * 24 23 22 26 26 C 1.35920 * 132.41970 * 180.02562 * 25 24 23 27 27 C 1.47618 * 108.35971 * 333.79830 * 15 14 12 28 28 C 1.53568 * 106.34106 * 0.86460 * 27 15 14 29 29 H 1.09001 * 108.71257 * 270.18471 * 28 27 15 30 30 C 1.43992 * 116.35308 * 184.65379 * 9 7 2 31 31 H 0.96996 * 120.00271 * 359.97438 * 1 2 3 32 32 H 1.08999 * 108.75701 * 308.19228 * 10 9 7 33 33 H 1.08998 * 108.75725 * 66.32373 * 10 9 7 34 34 H 1.08996 * 109.06483 * 81.45410 * 11 10 9 35 35 H 1.09000 * 109.06552 * 200.45559 * 11 10 9 36 36 H 1.08999 * 110.63235 * 167.80647 * 14 12 11 37 37 H 1.08999 * 110.48569 * 45.04931 * 14 12 11 38 38 H 1.08009 * 120.22963 * 0.04721 * 19 18 16 39 39 H 1.08007 * 120.24251 * 180.02562 * 20 19 18 40 40 H 1.07994 * 125.66662 * 179.82003 * 23 22 21 41 41 H 1.07997 * 126.42955 * 180.22869 * 24 23 22 42 42 H 1.07998 * 119.75334 * 359.97245 * 26 25 24 43 43 H 1.09002 * 110.08355 * 120.08034 * 27 15 14 44 44 H 1.08998 * 110.07778 * 241.59007 * 27 15 14 45 45 H 1.08994 * 108.16001 * 60.77877 * 30 9 7 46 46 H 1.09005 * 107.99529 * 304.09928 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3920 2.1074 -1.3947 5 1 1.5044 2.6198 0.8030 6 1 3.5966 1.4120 0.5917 7 6 2.0102 -1.2022 -0.0005 8 1 2.9465 -1.2850 -0.5324 9 7 1.5077 -2.2832 0.6733 10 6 0.2035 -2.1174 1.2687 11 6 -0.2063 -3.2886 2.1397 12 6 0.2238 -4.6217 1.5271 13 1 -0.2900 -4.8432 0.5917 14 6 0.0243 -5.7077 2.6318 15 7 1.1287 -5.4590 3.5815 16 6 1.1268 -5.7708 4.8927 17 8 0.1933 -6.3867 5.3698 18 6 2.2577 -5.3648 5.7493 19 6 3.4194 -4.7970 5.1681 20 6 4.4533 -4.4277 5.9643 21 6 4.3568 -4.6139 7.3603 22 7 5.1918 -4.3443 8.3521 23 6 4.6346 -4.7131 9.5089 24 6 3.4103 -5.2224 9.2556 25 7 3.2218 -5.1654 7.8997 26 6 2.1858 -5.5358 7.1016 27 6 2.2369 -4.8165 2.8479 28 6 1.7595 -4.6569 1.3970 29 1 2.0347 -5.5513 0.8379 30 6 2.3396 -3.4580 0.7080 31 1 -0.4850 0.8400 0.0004 32 1 0.2085 -1.2131 1.8772 33 1 -0.5322 -1.9977 0.4734 34 1 0.2563 -3.1818 3.1208 35 1 -1.2902 -3.2844 2.2551 36 1 0.1048 -6.7079 2.2062 37 1 -0.9393 -5.5781 3.1246 38 1 3.4805 -4.6591 4.0986 39 1 5.3436 -3.9936 5.5336 40 1 5.0866 -4.6158 10.4849 41 1 2.7108 -5.6036 9.9848 42 1 1.2991 -5.9686 7.5408 43 1 2.4550 -3.8397 3.2796 44 1 3.1248 -5.4478 2.8833 45 1 3.2734 -3.1984 1.2066 46 1 2.5721 -3.7365 -0.3199 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088166326.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:03 Heat of formation + Delta-G solvation = 109.671669 kcal Electronic energy + Delta-G solvation = -29881.377203 eV Core-core repulsion = 25966.939241 eV Total energy + Delta-G solvation = -3914.437962 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -43.90995 -41.84981 -39.92964 -38.02817 -37.39717 -34.99959 -34.16722 -33.19692 -32.14148 -31.45196 -30.04260 -29.23041 -27.34433 -25.96907 -24.79261 -24.32236 -23.29363 -22.98030 -22.76590 -20.95054 -19.58988 -19.22663 -18.87071 -18.32774 -17.33409 -17.14078 -16.94605 -16.83152 -16.62859 -15.86604 -15.73915 -15.65278 -15.48965 -15.29393 -14.86451 -14.72201 -14.60867 -14.44819 -14.05152 -13.75653 -13.47433 -13.22912 -13.06222 -12.95212 -12.84650 -12.68674 -12.40346 -12.27345 -12.15067 -11.88431 -11.66065 -11.51417 -11.26218 -11.24263 -11.21636 -11.12531 -10.21104 -10.05081 -9.71715 -8.95668 -8.82381 -7.84715 -5.09469 -0.58422 -0.01005 1.29661 1.43797 1.44911 1.51644 1.59863 1.90278 2.00202 2.49835 2.54050 3.12253 3.18655 3.20541 3.46162 3.46788 3.60634 3.62011 3.78962 3.87020 3.89439 4.18364 4.24906 4.30780 4.37446 4.44463 4.47388 4.52185 4.62812 4.68114 4.77359 4.81221 4.87629 4.91562 4.97265 5.00733 5.07576 5.12234 5.23104 5.30204 5.32470 5.37925 5.57472 5.64922 5.74928 5.86939 5.93771 6.32680 6.37658 6.74873 6.90039 7.23125 8.11918 8.27215 9.12169 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012313 B = 0.003318 C = 0.002830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2273.466279 B = 8437.975175 C = 9891.050534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.040 4.040 3 Si 0.935 3.065 4 H -0.289 1.289 5 H -0.298 1.298 6 H -0.273 1.273 7 C -0.280 4.280 8 H 0.080 0.920 9 N -0.609 5.609 10 C 0.200 3.800 11 C -0.117 4.117 12 C -0.081 4.081 13 H 0.108 0.892 14 C 0.117 3.883 15 N -0.603 5.603 16 C 0.587 3.413 17 O -0.573 6.573 18 C -0.163 4.163 19 C -0.112 4.112 20 C -0.090 4.090 21 C 0.207 3.793 22 N -0.526 5.526 23 C 0.020 3.980 24 C -0.092 4.092 25 N -0.373 5.373 26 C 0.132 3.868 27 C 0.097 3.903 28 C -0.097 4.097 29 H 0.113 0.887 30 C 0.172 3.828 31 H 0.246 0.754 32 H -0.006 1.006 33 H 0.020 0.980 34 H 0.046 0.954 35 H 0.061 0.939 36 H 0.095 0.905 37 H 0.073 0.927 38 H 0.192 0.808 39 H 0.172 0.828 40 H 0.212 0.788 41 H 0.221 0.779 42 H 0.190 0.810 43 H 0.076 0.924 44 H 0.116 0.884 45 H 0.029 0.971 46 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.326 -15.561 13.333 21.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.237 4.237 3 Si 0.763 3.237 4 H -0.216 1.216 5 H -0.225 1.225 6 H -0.198 1.198 7 C -0.409 4.409 8 H 0.097 0.903 9 N -0.335 5.335 10 C 0.075 3.925 11 C -0.155 4.155 12 C -0.100 4.100 13 H 0.126 0.874 14 C -0.005 4.005 15 N -0.335 5.335 16 C 0.377 3.623 17 O -0.455 6.455 18 C -0.169 4.169 19 C -0.134 4.134 20 C -0.110 4.110 21 C -0.037 4.037 22 N -0.247 5.247 23 C -0.129 4.129 24 C -0.221 4.221 25 N -0.046 5.046 26 C 0.007 3.993 27 C -0.024 4.024 28 C -0.116 4.116 29 H 0.131 0.869 30 C 0.047 3.953 31 H 0.056 0.944 32 H 0.012 0.988 33 H 0.038 0.962 34 H 0.065 0.935 35 H 0.080 0.920 36 H 0.113 0.887 37 H 0.091 0.909 38 H 0.208 0.792 39 H 0.189 0.811 40 H 0.229 0.771 41 H 0.238 0.762 42 H 0.207 0.793 43 H 0.094 0.906 44 H 0.134 0.866 45 H 0.047 0.953 46 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 5.486 -15.517 13.713 21.423 hybrid contribution -0.672 1.262 0.047 1.431 sum 4.814 -14.255 13.760 20.389 Atomic orbital electron populations 1.70547 1.06623 1.25455 1.53383 1.25296 0.95556 1.00536 1.02287 0.85756 0.79176 0.81489 0.77254 1.21599 1.22503 1.19771 1.19518 1.04039 0.89408 1.27966 0.90260 1.43121 1.17371 1.11833 1.61174 1.19701 0.85856 0.92906 0.94056 1.21569 1.00423 0.95087 0.98465 1.22277 0.96035 0.93477 0.98197 0.87399 1.22710 0.89880 0.99093 0.88809 1.48447 1.18732 1.59054 1.07224 1.17429 0.85369 0.78824 0.80676 1.90772 1.38102 1.42765 1.73844 1.19246 0.97237 1.07837 0.92612 1.22684 0.90718 0.95746 1.04299 1.20510 1.01678 1.01739 0.87039 1.21585 0.84521 1.01332 0.96241 1.70743 1.30149 1.24973 0.98837 1.23182 0.92607 0.99017 0.98052 1.23468 1.02976 1.13797 0.81846 1.43011 1.13326 1.39674 1.08573 1.21830 0.91615 0.95643 0.90261 1.22802 0.90048 0.98276 0.91288 1.21516 0.95418 0.99497 0.95131 0.86935 1.19439 0.92823 0.85374 0.97647 0.94421 0.98821 0.96171 0.93477 0.91985 0.88730 0.90896 0.79166 0.81097 0.77136 0.76220 0.79294 0.90611 0.86647 0.95310 0.96117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.72 10.21 21.65 0.22 -52.50 16 2 C -0.04 -2.21 4.77 84.86 0.40 -1.81 16 3 Si 0.93 43.97 29.67 68.60 2.04 46.00 16 4 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 5 H -0.30 -14.33 7.11 99.48 0.71 -13.63 16 6 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 7 C -0.28 -14.67 9.44 84.03 0.79 -13.88 16 8 H 0.08 4.03 7.98 -2.91 -0.02 4.00 16 9 N -0.61 -27.93 3.25 -722.09 -2.35 -30.28 16 10 C 0.20 9.30 4.70 86.33 0.41 9.71 16 11 C -0.12 -4.05 4.98 30.10 0.15 -3.90 16 12 C -0.08 -2.13 3.78 -9.33 -0.04 -2.16 16 13 H 0.11 2.79 8.14 -2.39 -0.02 2.77 16 14 C 0.12 2.63 6.23 87.25 0.54 3.17 16 15 N -0.60 -14.06 2.80 -820.85 -2.30 -16.36 16 16 C 0.59 15.13 7.80 86.71 0.68 15.81 16 17 O -0.57 -17.75 16.60 -3.97 -0.07 -17.82 16 18 C -0.16 -3.69 5.83 -20.35 -0.12 -3.80 16 19 C -0.11 -2.26 8.58 22.54 0.19 -2.06 16 20 C -0.09 -1.92 10.09 22.38 0.23 -1.70 16 21 C 0.21 5.16 7.81 134.16 1.05 6.21 16 22 N -0.53 -13.73 11.31 -194.15 -2.20 -15.92 16 23 C 0.02 0.38 11.82 83.68 0.99 1.37 16 24 C -0.09 -1.55 11.75 83.14 0.98 -0.57 16 25 N -0.37 -8.10 2.93 -351.05 -1.03 -9.13 16 26 C 0.13 2.78 10.49 83.65 0.88 3.66 16 27 C 0.10 2.01 3.52 86.36 0.30 2.32 16 28 C -0.10 -2.33 2.68 -11.19 -0.03 -2.36 16 29 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 30 C 0.17 5.83 5.64 85.87 0.48 6.32 16 31 H 0.25 13.89 8.31 -92.71 -0.77 13.12 16 32 H -0.01 -0.35 6.96 -2.39 -0.02 -0.36 16 33 H 0.02 1.09 6.79 -2.39 -0.02 1.08 16 34 H 0.05 1.64 6.77 -2.39 -0.02 1.62 16 35 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 36 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.07 1.80 7.98 -2.39 -0.02 1.78 16 38 H 0.19 3.23 2.82 -6.34 -0.02 3.21 16 39 H 0.17 3.00 8.06 -2.91 -0.02 2.98 16 40 H 0.21 2.36 8.06 -2.91 -0.02 2.34 16 41 H 0.22 1.81 8.06 -2.91 -0.02 1.79 16 42 H 0.19 3.37 7.58 -2.91 -0.02 3.35 16 43 H 0.08 1.81 6.40 -2.39 -0.02 1.80 16 44 H 0.12 1.64 6.78 -2.39 -0.02 1.63 16 45 H 0.03 0.94 7.78 -2.39 -0.02 0.92 16 46 H 0.02 0.72 8.14 -2.38 -0.02 0.70 16 Total: -1.00 -72.39 359.01 3.21 -69.19 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: 1.00 Total: 10.51 kcal Atomic # 6 Polarization: 8.43 SS G_CDS: 7.89 Total: 16.31 kcal Atomic # 7 Polarization: -116.54 SS G_CDS: -7.65 Total: -124.19 kcal Atomic # 8 Polarization: -17.75 SS G_CDS: -0.07 Total: -17.82 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.04 Total: 46.00 kcal Total: -72.39 3.21 -69.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088166326.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.858 kcal (2) G-P(sol) polarization free energy of solvation -72.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.186 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds