Wall clock time and date at job start Sat Apr 11 2020 06:05:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86798 * 120.00196 * 2 1 4 4 H 1.48500 * 109.46977 * 270.00427 * 3 2 1 5 5 H 1.48503 * 109.46986 * 30.00365 * 3 2 1 6 6 H 1.48497 * 109.46938 * 150.00213 * 3 2 1 7 7 C 1.38820 * 119.99651 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00314 * 359.97438 * 7 2 1 9 9 N 1.36942 * 119.99552 * 180.02562 * 7 2 1 10 10 C 1.46500 * 119.99851 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47128 * 179.97438 * 10 9 7 12 12 N 1.46505 * 109.47072 * 179.97438 * 11 10 9 13 13 C 1.46498 * 120.00065 * 262.91067 * 12 11 10 14 14 C 1.53002 * 109.46766 * 270.00076 * 13 12 11 15 15 C 1.50701 * 109.46836 * 180.02562 * 14 13 12 16 16 C 1.38246 * 119.99871 * 269.72336 * 15 14 13 17 17 C 1.38226 * 119.99702 * 179.76716 * 16 15 14 18 18 C 1.38243 * 120.00475 * 0.51041 * 17 16 15 19 19 C 1.38232 * 119.99415 * 359.74299 * 18 17 16 20 20 C 1.38229 * 120.00307 * 90.00142 * 15 14 13 21 21 C 1.34769 * 119.99764 * 82.91094 * 12 11 10 22 22 O 1.21518 * 120.00385 * 183.20550 * 21 12 11 23 23 C 1.48156 * 120.00288 * 3.19954 * 21 12 11 24 24 C 1.39441 * 120.09799 * 173.24211 * 23 21 12 25 25 N 1.32075 * 119.87409 * 180.02562 * 24 23 21 26 26 C 1.32140 * 120.07080 * 359.97438 * 25 24 23 27 27 C 1.38733 * 120.19734 * 0.27646 * 26 25 24 28 28 N 1.31806 * 120.12154 * 359.43448 * 27 26 25 29 29 H 0.96998 * 119.99963 * 359.97438 * 1 2 3 30 30 H 0.96998 * 119.99852 * 359.97438 * 9 7 2 31 31 H 1.09002 * 109.47321 * 59.99617 * 10 9 7 32 32 H 1.09003 * 109.46910 * 299.99848 * 10 9 7 33 33 H 1.09002 * 109.47087 * 59.99774 * 11 10 9 34 34 H 1.09003 * 109.47345 * 299.99881 * 11 10 9 35 35 H 1.09003 * 109.46976 * 29.99641 * 13 12 11 36 36 H 1.08997 * 109.47453 * 150.00192 * 13 12 11 37 37 H 1.08994 * 109.47104 * 299.99795 * 14 13 12 38 38 H 1.08997 * 109.47637 * 60.00333 * 14 13 12 39 39 H 1.07995 * 119.99356 * 359.97438 * 16 15 14 40 40 H 1.08006 * 119.99996 * 180.23288 * 17 16 15 41 41 H 1.07997 * 119.99890 * 179.72482 * 18 17 16 42 42 H 1.08000 * 119.99714 * 179.97438 * 19 18 17 43 43 H 1.08002 * 119.99970 * 359.97438 * 20 15 14 44 44 H 1.08005 * 120.06313 * 0.04183 * 24 23 21 45 45 H 1.08002 * 119.90211 * 180.02562 * 26 25 24 46 46 H 1.07999 * 119.94021 * 179.70101 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5478 1.4400 0.7000 7 6 2.0103 -1.2023 -0.0005 8 1 1.4703 -2.1376 -0.0005 9 7 3.3797 -1.2022 0.0000 10 6 4.1122 -2.4710 -0.0011 11 6 5.6164 -2.1914 -0.0009 12 7 6.3489 -3.4602 -0.0014 13 6 6.8506 -4.0169 1.2574 14 6 8.2650 -3.4948 1.5179 15 6 8.7814 -4.0679 2.8125 16 6 8.5687 -3.3936 4.0005 17 6 9.0382 -3.9217 5.1885 18 6 9.7295 -5.1188 5.1875 19 6 9.9467 -5.7904 3.9990 20 6 9.4727 -5.2649 2.8115 21 6 6.5611 -4.1152 -1.1599 22 8 7.1173 -5.1956 -1.1541 23 6 6.1162 -3.5182 -2.4408 24 6 6.4575 -4.1229 -3.6500 25 7 6.0590 -3.5866 -4.7893 26 6 5.3378 -2.4794 -4.7834 27 6 5.0010 -1.8724 -3.5822 28 7 5.3897 -2.4041 -2.4406 29 1 -0.4850 0.8400 0.0004 30 1 3.8646 -0.3622 0.0004 31 1 3.8491 -3.0416 -0.8918 32 1 3.8485 -3.0435 0.8881 33 1 5.8797 -1.6206 0.8896 34 1 5.8797 -1.6191 -0.8904 35 1 6.1956 -3.7151 2.0747 36 1 6.8713 -5.1046 1.1910 37 1 8.9199 -3.7965 0.7006 38 1 8.2444 -2.4070 1.5844 39 1 8.0329 -2.4559 4.0006 40 1 8.8688 -3.3968 6.1171 41 1 10.1002 -5.5291 6.1152 42 1 10.4871 -6.7255 3.9981 43 1 9.6423 -5.7897 1.8829 44 1 7.0464 -5.0283 -3.6550 45 1 5.0130 -2.0434 -5.7166 46 1 4.4154 -0.9649 -3.5824 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162678708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:02 Heat of formation + Delta-G solvation = 77.596457 kcal Electronic energy + Delta-G solvation = -28832.638100 eV Core-core repulsion = 24916.809252 eV Total energy + Delta-G solvation = -3915.828847 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.43093 -39.78719 -39.17035 -36.56602 -34.83873 -34.40774 -33.17202 -31.72979 -31.39325 -31.05438 -29.10485 -27.78368 -25.65669 -24.72636 -23.81102 -23.39433 -22.73242 -21.47732 -21.22165 -19.89106 -18.02449 -17.76606 -17.07763 -17.02862 -16.83350 -16.13137 -15.76788 -15.41721 -15.18244 -14.94627 -14.53534 -14.38628 -13.96354 -13.92104 -13.75121 -13.60047 -13.27705 -13.22880 -13.03775 -12.83231 -12.60762 -12.28595 -11.93497 -11.61460 -11.41822 -11.33601 -11.21343 -11.10723 -10.99009 -10.88820 -10.54482 -10.33799 -10.19996 -9.62478 -9.55286 -9.13154 -9.09100 -8.91673 -8.87853 -8.52002 -7.23260 -5.78221 -3.13304 0.30621 0.97193 1.16043 1.23178 2.64069 2.81267 3.33184 3.35779 3.42569 3.60343 3.69412 3.85111 4.07978 4.32224 4.54894 4.56404 4.65141 4.67323 4.83424 4.96532 4.96857 5.05430 5.08504 5.12485 5.31194 5.34794 5.37584 5.44929 5.45427 5.53618 5.59589 5.68750 5.80383 5.82159 5.90428 5.98472 6.02892 6.21013 6.28532 6.34024 6.41007 6.47467 6.73981 6.82037 6.83482 7.04340 7.27459 7.56978 7.97867 8.01987 8.40479 9.19976 9.91930 10.12503 11.40413 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.008289 B = 0.003580 C = 0.002641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3376.969682 B = 7819.308198 C =10597.752192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.003 3.997 3 Si 0.885 3.115 4 H -0.284 1.284 5 H -0.292 1.292 6 H -0.277 1.277 7 C -0.238 4.238 8 H 0.087 0.913 9 N -0.748 5.748 10 C 0.159 3.841 11 C 0.088 3.912 12 N -0.584 5.584 13 C 0.119 3.881 14 C -0.095 4.095 15 C -0.077 4.077 16 C -0.115 4.115 17 C -0.119 4.119 18 C -0.126 4.126 19 C -0.120 4.120 20 C -0.113 4.113 21 C 0.577 3.423 22 O -0.536 6.536 23 C 0.024 3.976 24 C 0.104 3.896 25 N -0.444 5.444 26 C 0.070 3.930 27 C 0.055 3.945 28 N -0.383 5.383 29 H 0.259 0.741 30 H 0.360 0.640 31 H 0.029 0.971 32 H 0.019 0.981 33 H 0.070 0.930 34 H 0.115 0.885 35 H 0.085 0.915 36 H 0.088 0.912 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.123 0.877 40 H 0.121 0.879 41 H 0.119 0.881 42 H 0.120 0.880 43 H 0.123 0.877 44 H 0.178 0.822 45 H 0.175 0.825 46 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.569 -6.828 0.772 21.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.192 4.192 3 Si 0.716 3.284 4 H -0.211 1.211 5 H -0.219 1.219 6 H -0.203 1.203 7 C -0.368 4.368 8 H 0.105 0.895 9 N -0.393 5.393 10 C 0.031 3.969 11 C -0.034 4.034 12 N -0.314 5.314 13 C -0.003 4.003 14 C -0.134 4.134 15 C -0.078 4.078 16 C -0.133 4.133 17 C -0.137 4.137 18 C -0.144 4.144 19 C -0.138 4.138 20 C -0.131 4.131 21 C 0.363 3.637 22 O -0.413 6.413 23 C -0.117 4.117 24 C -0.056 4.056 25 N -0.158 5.158 26 C -0.090 4.090 27 C -0.107 4.107 28 N -0.101 5.101 29 H 0.069 0.931 30 H 0.192 0.808 31 H 0.047 0.953 32 H 0.037 0.963 33 H 0.089 0.911 34 H 0.132 0.868 35 H 0.103 0.897 36 H 0.106 0.894 37 H 0.095 0.905 38 H 0.094 0.906 39 H 0.141 0.859 40 H 0.139 0.861 41 H 0.137 0.863 42 H 0.138 0.862 43 H 0.141 0.859 44 H 0.195 0.805 45 H 0.192 0.808 46 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 20.634 -7.520 0.810 21.977 hybrid contribution 0.248 1.377 0.099 1.403 sum 20.882 -6.143 0.909 21.786 Atomic orbital electron populations 1.69704 1.05127 1.25761 1.57788 1.24660 0.95195 0.97110 1.02270 0.86539 0.79180 0.85004 0.77705 1.21122 1.21877 1.20347 1.19019 0.80525 0.94602 1.42629 0.89495 1.42461 1.03822 1.01893 1.91161 1.20775 0.88423 0.89524 0.98208 1.22454 0.93034 0.83866 1.04061 1.47794 1.53711 1.23871 1.06073 1.21544 0.93661 0.99978 0.85141 1.20973 0.96843 1.00907 0.94655 1.19780 0.98066 0.95204 0.94750 1.21127 0.99935 1.00137 0.92092 1.21156 0.98351 0.96201 0.98038 1.21151 0.99525 0.95714 0.98040 1.21148 1.00137 0.99882 0.92659 1.21126 0.98076 0.95549 0.98389 1.17712 0.78987 0.84192 0.82818 1.90767 1.43655 1.20296 1.86558 1.22183 0.99053 0.94806 0.95618 1.23720 0.95606 0.99105 0.87155 1.68603 1.08758 1.09534 1.28933 1.24112 0.92958 0.91700 1.00266 1.24139 0.97168 1.01020 0.88324 1.69100 1.05036 1.07185 1.28754 0.93092 0.80753 0.95268 0.96293 0.91130 0.86796 0.89672 0.89403 0.90548 0.90585 0.85887 0.86101 0.86295 0.86171 0.85887 0.80465 0.80840 0.80271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -28.86 13.97 55.49 0.78 -28.08 16 2 C 0.00 0.09 5.50 -17.43 -0.10 -0.01 16 3 Si 0.89 21.17 27.74 -169.99 -4.71 16.45 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 6 H -0.28 -6.18 6.52 56.52 0.37 -5.81 16 7 C -0.24 -6.54 10.48 -15.05 -0.16 -6.70 16 8 H 0.09 2.63 8.06 -52.49 -0.42 2.20 16 9 N -0.75 -16.87 5.41 -59.91 -0.32 -17.20 16 10 C 0.16 3.02 5.93 -4.04 -0.02 3.00 16 11 C 0.09 1.31 5.10 -4.04 -0.02 1.29 16 12 N -0.58 -8.07 2.49 -174.68 -0.44 -8.51 16 13 C 0.12 1.44 5.38 -4.04 -0.02 1.42 16 14 C -0.10 -1.00 5.67 -27.88 -0.16 -1.16 16 15 C -0.08 -0.80 5.13 -104.62 -0.54 -1.34 16 16 C -0.11 -1.14 9.70 -39.58 -0.38 -1.53 16 17 C -0.12 -1.10 10.05 -39.58 -0.40 -1.49 16 18 C -0.13 -1.11 10.05 -39.58 -0.40 -1.51 16 19 C -0.12 -1.09 10.05 -39.58 -0.40 -1.49 16 20 C -0.11 -1.14 9.70 -39.59 -0.38 -1.52 16 21 C 0.58 8.54 7.60 -12.19 -0.09 8.45 16 22 O -0.54 -8.63 15.93 5.35 0.09 -8.55 16 23 C 0.02 0.34 6.51 -82.84 -0.54 -0.20 16 24 C 0.10 1.33 10.77 -17.00 -0.18 1.15 16 25 N -0.44 -5.51 10.49 -12.71 -0.13 -5.64 16 26 C 0.07 0.75 11.23 -17.24 -0.19 0.56 16 27 C 0.06 0.67 11.22 -17.38 -0.20 0.48 16 28 N -0.38 -5.49 4.55 -9.61 -0.04 -5.54 16 29 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 30 H 0.36 7.81 5.53 -40.82 -0.23 7.58 16 31 H 0.03 0.60 6.77 -51.93 -0.35 0.25 16 32 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.07 0.97 8.02 -51.93 -0.42 0.56 16 34 H 0.11 1.69 5.24 -52.09 -0.27 1.42 16 35 H 0.08 1.00 8.07 -51.93 -0.42 0.58 16 36 H 0.09 1.13 7.38 -51.93 -0.38 0.75 16 37 H 0.08 0.85 8.08 -51.93 -0.42 0.43 16 38 H 0.08 0.76 8.08 -51.93 -0.42 0.34 16 39 H 0.12 1.10 8.06 -52.49 -0.42 0.67 16 40 H 0.12 0.88 8.06 -52.48 -0.42 0.46 16 41 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 42 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 43 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 44 H 0.18 2.02 7.66 -52.48 -0.40 1.61 16 45 H 0.17 1.24 8.06 -52.49 -0.42 0.82 16 46 H 0.18 1.95 8.06 -52.49 -0.42 1.53 16 LS Contribution 387.12 15.07 5.83 5.83 Total: -1.00 -33.30 387.12 -9.42 -42.73 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: -6.28 Total: 9.12 kcal Atomic # 6 Polarization: 3.57 SS G_CDS: -4.18 Total: -0.61 kcal Atomic # 7 Polarization: -64.81 SS G_CDS: -0.16 Total: -64.97 kcal Atomic # 8 Polarization: -8.63 SS G_CDS: 0.09 Total: -8.55 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -4.71 Total: 16.45 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.30 -9.42 -42.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162678708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.322 kcal (2) G-P(sol) polarization free energy of solvation -33.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.726 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds