Wall clock time and date at job start Sat Apr 11 2020 06:03:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86792 * 120.00106 * 2 1 4 4 H 1.48501 * 109.47262 * 240.00098 * 3 2 1 5 5 H 1.48496 * 109.47153 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47007 * 120.00210 * 3 2 1 7 7 C 1.38815 * 119.99709 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99685 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00013 * 0.02562 * 7 2 1 10 10 C 1.46508 * 119.99749 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.46722 * 179.97438 * 10 9 7 12 12 N 1.46504 * 109.46660 * 179.97438 * 11 10 9 13 13 C 1.46498 * 120.00054 * 262.96699 * 12 11 10 14 14 C 1.53003 * 109.47093 * 270.00218 * 13 12 11 15 15 C 1.50698 * 109.47223 * 180.02562 * 14 13 12 16 16 C 1.38235 * 119.99761 * 269.72716 * 15 14 13 17 17 C 1.38237 * 120.00139 * 179.76178 * 16 15 14 18 18 C 1.38238 * 119.99730 * 0.51255 * 17 16 15 19 19 C 1.38236 * 119.99801 * 359.73889 * 18 17 16 20 20 C 1.38230 * 120.00195 * 0.02562 * 19 18 17 21 21 C 1.34779 * 119.99904 * 82.97253 * 12 11 10 22 22 O 1.21518 * 119.99993 * 183.25101 * 21 12 11 23 23 C 1.48157 * 120.00067 * 3.23929 * 21 12 11 24 24 C 1.39713 * 120.18238 * 173.27850 * 23 21 12 25 25 C 1.38822 * 117.89616 * 180.24314 * 24 23 21 26 26 C 1.38570 * 118.07206 * 359.51803 * 25 24 23 27 27 N 1.32171 * 120.06285 * 0.22548 * 26 25 24 28 28 N 1.28350 * 122.30668 * 0.02694 * 27 26 25 29 29 H 0.96995 * 119.99909 * 0.02562 * 1 2 3 30 30 H 0.96995 * 120.00309 * 359.97438 * 9 7 2 31 31 H 1.08993 * 109.47356 * 59.99400 * 10 9 7 32 32 H 1.08996 * 109.46894 * 299.99442 * 10 9 7 33 33 H 1.09001 * 109.47213 * 60.00377 * 11 10 9 34 34 H 1.08996 * 109.47256 * 299.99557 * 11 10 9 35 35 H 1.08993 * 109.47353 * 30.00421 * 13 12 11 36 36 H 1.09000 * 109.47097 * 150.00309 * 13 12 11 37 37 H 1.09004 * 109.47111 * 299.99793 * 14 13 12 38 38 H 1.09000 * 109.47075 * 60.00077 * 14 13 12 39 39 H 1.08004 * 120.00218 * 359.97438 * 16 15 14 40 40 H 1.07997 * 120.00142 * 180.22499 * 17 16 15 41 41 H 1.08002 * 120.00158 * 179.72211 * 18 17 16 42 42 H 1.08000 * 119.99675 * 179.97438 * 19 18 17 43 43 H 1.08005 * 119.99823 * 179.97438 * 20 19 18 44 44 H 1.07999 * 121.05596 * 0.02562 * 24 23 21 45 45 H 1.08008 * 120.96536 * 179.78949 * 25 24 23 46 46 H 1.07995 * 119.96898 * 180.25337 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6963 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0016 10 6 2.0580 -3.6569 -0.0016 11 6 1.0637 -4.8197 -0.0022 12 7 1.7962 -6.0885 -0.0029 13 6 2.0280 -6.7999 -1.2624 14 6 0.8688 -7.7634 -1.5247 15 6 1.1075 -8.4957 -2.8200 16 6 0.6305 -7.9730 -4.0075 17 6 0.8537 -8.6421 -5.1963 18 6 1.5447 -9.8394 -5.1963 19 6 2.0172 -10.3647 -4.0082 20 6 1.7982 -9.6931 -2.8200 21 6 2.2568 -6.6013 1.1554 22 8 2.9150 -7.6227 1.1484 23 6 1.9607 -5.9195 2.4370 24 6 2.3137 -6.5181 3.6490 25 6 2.0093 -5.8399 4.8214 26 6 1.3839 -4.6076 4.7183 27 7 1.0901 -4.1117 3.5289 28 7 1.3632 -4.7336 2.4398 29 1 -0.4850 0.8400 -0.0004 30 1 0.3555 -2.3881 -0.0016 31 1 2.6840 -3.7150 0.8887 32 1 2.6852 -3.7143 -0.8911 33 1 0.4374 -4.7618 -0.8925 34 1 0.4367 -4.7622 0.8875 35 1 2.0946 -6.0809 -2.0788 36 1 2.9596 -7.3618 -1.1961 37 1 0.8022 -8.4825 -0.7082 38 1 -0.0629 -7.2015 -1.5909 39 1 0.0864 -7.0400 -4.0069 40 1 0.4842 -8.2319 -6.1245 41 1 1.7152 -10.3645 -6.1246 42 1 2.5567 -11.3003 -4.0082 43 1 2.1670 -10.1038 -1.8917 44 1 2.8047 -7.4798 3.6732 45 1 2.2567 -6.2585 5.7858 46 1 1.1368 -4.0517 5.6106 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162963269.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:15 Heat of formation + Delta-G solvation = 85.591700 kcal Electronic energy + Delta-G solvation = -28737.497558 eV Core-core repulsion = 24822.015410 eV Total energy + Delta-G solvation = -3915.482148 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.25919 -39.72723 -39.12408 -36.41629 -34.53553 -33.48648 -33.12185 -32.37687 -31.07966 -31.00683 -28.89178 -27.40184 -25.59145 -24.64867 -23.77594 -23.41310 -22.68736 -21.55094 -21.17058 -19.85998 -17.91836 -17.40063 -16.97406 -16.86193 -16.53184 -16.06291 -15.67892 -15.37034 -15.14475 -14.63439 -14.51045 -14.28044 -14.01393 -13.62947 -13.59060 -13.28316 -13.23148 -13.12602 -13.06137 -12.98630 -12.58685 -12.20230 -11.48316 -11.33712 -11.25604 -11.10549 -10.92896 -10.86575 -10.74447 -10.69115 -10.28246 -10.08762 -10.06159 -9.81363 -9.64225 -9.47371 -9.04493 -8.95807 -8.73976 -8.45487 -6.77793 -5.64737 -2.91500 0.45912 0.74516 1.20793 1.27767 2.66799 2.87507 3.50650 3.54638 3.55786 3.63497 3.69145 3.88280 4.34757 4.46263 4.59573 4.68937 4.70271 4.73442 4.81092 4.87899 4.99006 5.01319 5.08455 5.19404 5.38805 5.39716 5.49381 5.52904 5.56920 5.70222 5.71135 5.79592 5.84855 5.92613 5.95527 6.01376 6.07115 6.20698 6.33421 6.36461 6.38384 6.52855 6.54759 6.87958 6.89022 6.99672 7.39267 7.79322 8.02612 8.53989 8.66171 9.65185 10.23716 10.59354 11.58194 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.008258 B = 0.003376 C = 0.002506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3390.008435 B = 8291.428332 C =11169.408157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.013 4.013 3 Si 0.904 3.096 4 H -0.288 1.288 5 H -0.292 1.292 6 H -0.288 1.288 7 C -0.230 4.230 8 H 0.065 0.935 9 N -0.720 5.720 10 C 0.156 3.844 11 C 0.089 3.911 12 N -0.583 5.583 13 C 0.120 3.880 14 C -0.096 4.096 15 C -0.077 4.077 16 C -0.114 4.114 17 C -0.119 4.119 18 C -0.127 4.127 19 C -0.121 4.121 20 C -0.114 4.114 21 C 0.577 3.423 22 O -0.540 6.540 23 C 0.012 3.988 24 C -0.070 4.070 25 C -0.129 4.129 26 C 0.053 3.947 27 N -0.226 5.226 28 N -0.174 5.174 29 H 0.254 0.746 30 H 0.385 0.615 31 H 0.019 0.981 32 H 0.011 0.989 33 H 0.075 0.925 34 H 0.115 0.885 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.075 0.925 38 H 0.078 0.922 39 H 0.125 0.875 40 H 0.121 0.879 41 H 0.119 0.881 42 H 0.120 0.880 43 H 0.122 0.878 44 H 0.157 0.843 45 H 0.154 0.846 46 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.456 -21.486 1.138 21.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.209 4.209 3 Si 0.735 3.265 4 H -0.215 1.215 5 H -0.218 1.218 6 H -0.215 1.215 7 C -0.362 4.362 8 H 0.083 0.917 9 N -0.364 5.364 10 C 0.027 3.973 11 C -0.034 4.034 12 N -0.313 5.313 13 C -0.003 4.003 14 C -0.135 4.135 15 C -0.077 4.077 16 C -0.132 4.132 17 C -0.137 4.137 18 C -0.145 4.145 19 C -0.139 4.139 20 C -0.132 4.132 21 C 0.362 3.638 22 O -0.417 6.417 23 C -0.134 4.134 24 C -0.099 4.099 25 C -0.158 4.158 26 C -0.110 4.110 27 N -0.069 5.069 28 N -0.021 5.021 29 H 0.064 0.936 30 H 0.218 0.782 31 H 0.037 0.963 32 H 0.029 0.971 33 H 0.094 0.906 34 H 0.133 0.867 35 H 0.104 0.896 36 H 0.105 0.895 37 H 0.094 0.906 38 H 0.096 0.904 39 H 0.143 0.857 40 H 0.139 0.861 41 H 0.137 0.863 42 H 0.138 0.862 43 H 0.140 0.860 44 H 0.175 0.825 45 H 0.171 0.829 46 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 1.276 -20.656 0.232 20.697 hybrid contribution 0.865 -0.065 0.916 1.261 sum 2.140 -20.721 1.148 20.863 Atomic orbital electron populations 1.69647 1.04954 1.25471 1.58025 1.24666 0.95466 0.97362 1.03369 0.86314 0.78519 0.83911 0.77717 1.21453 1.21753 1.21483 1.19106 0.90761 0.84124 1.42179 0.91667 1.42052 1.05750 0.99387 1.89220 1.20766 0.93525 0.85711 0.97258 1.22478 0.95418 0.81054 1.04419 1.47860 1.54406 1.23049 1.05949 1.21537 0.98482 0.95084 0.85162 1.20983 0.99573 0.98332 0.94566 1.19788 0.97968 0.95175 0.94796 1.21152 0.99998 1.00010 0.92052 1.21160 0.99039 0.95481 0.98057 1.21144 0.98927 0.96407 0.98010 1.21135 1.00127 0.99960 0.92675 1.21117 0.98701 0.95040 0.98334 1.17645 0.79623 0.83662 0.82861 1.90751 1.39774 1.24523 1.86639 1.22909 0.99952 0.95201 0.95291 1.22327 0.95175 1.01023 0.91403 1.22412 0.97771 0.95763 0.99873 1.24611 0.93581 0.93820 0.98994 1.73468 1.12960 1.25336 0.95099 1.74031 1.05247 1.03413 1.19432 0.93637 0.78181 0.96315 0.97098 0.90625 0.86750 0.89567 0.89532 0.90606 0.90368 0.85750 0.86087 0.86337 0.86235 0.85956 0.82492 0.82851 0.80821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.46 13.06 55.49 0.72 -27.74 16 2 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 3 Si 0.90 22.92 29.55 -169.99 -5.02 17.89 16 4 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 5 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 6 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 7 C -0.23 -6.60 9.99 -15.06 -0.15 -6.75 16 8 H 0.07 1.84 7.83 -52.48 -0.41 1.43 16 9 N -0.72 -18.54 5.60 -59.91 -0.34 -18.88 16 10 C 0.16 3.30 5.93 -4.04 -0.02 3.27 16 11 C 0.09 1.50 5.10 -4.04 -0.02 1.48 16 12 N -0.58 -8.73 2.49 -174.68 -0.44 -9.16 16 13 C 0.12 1.54 5.38 -4.04 -0.02 1.52 16 14 C -0.10 -1.08 5.67 -27.88 -0.16 -1.24 16 15 C -0.08 -0.84 5.13 -104.63 -0.54 -1.37 16 16 C -0.11 -1.19 9.70 -39.58 -0.38 -1.58 16 17 C -0.12 -1.14 10.05 -39.58 -0.40 -1.54 16 18 C -0.13 -1.16 10.05 -39.58 -0.40 -1.55 16 19 C -0.12 -1.14 10.05 -39.59 -0.40 -1.53 16 20 C -0.11 -1.19 9.70 -39.59 -0.38 -1.57 16 21 C 0.58 9.05 7.60 -12.19 -0.09 8.96 16 22 O -0.54 -8.98 15.97 5.35 0.09 -8.89 16 23 C 0.01 0.18 6.59 -82.83 -0.55 -0.37 16 24 C -0.07 -0.81 9.73 -38.81 -0.38 -1.19 16 25 C -0.13 -1.21 10.20 -39.24 -0.40 -1.61 16 26 C 0.05 0.61 11.31 -17.28 -0.20 0.42 16 27 N -0.23 -3.81 11.51 30.58 0.35 -3.45 16 28 N -0.17 -3.01 5.60 33.32 0.19 -2.82 16 29 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 30 H 0.38 10.34 7.67 -40.82 -0.31 10.03 16 31 H 0.02 0.43 6.77 -51.93 -0.35 0.08 16 32 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.08 1.20 8.02 -51.93 -0.42 0.78 16 34 H 0.12 2.04 5.25 -52.21 -0.27 1.77 16 35 H 0.09 1.08 8.07 -51.93 -0.42 0.66 16 36 H 0.09 1.16 7.38 -51.93 -0.38 0.78 16 37 H 0.08 0.89 8.08 -51.93 -0.42 0.47 16 38 H 0.08 0.85 8.08 -51.93 -0.42 0.43 16 39 H 0.12 1.19 8.06 -52.48 -0.42 0.77 16 40 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 41 H 0.12 0.83 8.06 -52.49 -0.42 0.40 16 42 H 0.12 0.88 8.06 -52.49 -0.42 0.45 16 43 H 0.12 1.19 8.06 -52.48 -0.42 0.76 16 44 H 0.16 1.53 7.73 -52.49 -0.41 1.13 16 45 H 0.15 0.80 8.06 -52.48 -0.42 0.38 16 46 H 0.17 1.41 8.06 -52.49 -0.42 0.98 16 LS Contribution 390.53 15.07 5.89 5.89 Total: -1.00 -34.63 390.53 -9.47 -44.10 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: -6.33 Total: 8.21 kcal Atomic # 6 Polarization: -0.56 SS G_CDS: -4.58 Total: -5.14 kcal Atomic # 7 Polarization: -62.55 SS G_CDS: 0.49 Total: -62.06 kcal Atomic # 8 Polarization: -8.98 SS G_CDS: 0.09 Total: -8.89 kcal Atomic # 14 Polarization: 22.92 SS G_CDS: -5.02 Total: 17.89 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -34.63 -9.47 -44.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162963269.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.692 kcal (2) G-P(sol) polarization free energy of solvation -34.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.100 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds