Wall clock time and date at job start Sat Apr 11 2020 06:03:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86792 * 120.00106 * 2 1 4 4 H 1.48501 * 109.47262 * 240.00098 * 3 2 1 5 5 H 1.48496 * 109.47153 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47007 * 120.00210 * 3 2 1 7 7 C 1.38815 * 119.99709 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99685 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00013 * 0.02562 * 7 2 1 10 10 C 1.46508 * 119.99749 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.46722 * 179.97438 * 10 9 7 12 12 N 1.46504 * 109.46660 * 179.97438 * 11 10 9 13 13 C 1.46498 * 120.00054 * 262.96699 * 12 11 10 14 14 C 1.53003 * 109.47093 * 270.00218 * 13 12 11 15 15 C 1.50698 * 109.47223 * 180.02562 * 14 13 12 16 16 C 1.38235 * 119.99761 * 269.72716 * 15 14 13 17 17 C 1.38237 * 120.00139 * 179.76178 * 16 15 14 18 18 C 1.38238 * 119.99730 * 0.51255 * 17 16 15 19 19 C 1.38236 * 119.99801 * 359.73889 * 18 17 16 20 20 C 1.38230 * 120.00195 * 0.02562 * 19 18 17 21 21 C 1.34779 * 119.99904 * 82.97253 * 12 11 10 22 22 O 1.21518 * 119.99993 * 183.25101 * 21 12 11 23 23 C 1.48157 * 120.00067 * 3.23929 * 21 12 11 24 24 C 1.39713 * 120.18238 * 173.27850 * 23 21 12 25 25 C 1.38822 * 117.89616 * 180.24314 * 24 23 21 26 26 C 1.38570 * 118.07206 * 359.51803 * 25 24 23 27 27 N 1.32171 * 120.06285 * 0.22548 * 26 25 24 28 28 N 1.28350 * 122.30668 * 0.02694 * 27 26 25 29 29 H 0.96995 * 119.99909 * 0.02562 * 1 2 3 30 30 H 0.96995 * 120.00309 * 359.97438 * 9 7 2 31 31 H 1.08993 * 109.47356 * 59.99400 * 10 9 7 32 32 H 1.08996 * 109.46894 * 299.99442 * 10 9 7 33 33 H 1.09001 * 109.47213 * 60.00377 * 11 10 9 34 34 H 1.08996 * 109.47256 * 299.99557 * 11 10 9 35 35 H 1.08993 * 109.47353 * 30.00421 * 13 12 11 36 36 H 1.09000 * 109.47097 * 150.00309 * 13 12 11 37 37 H 1.09004 * 109.47111 * 299.99793 * 14 13 12 38 38 H 1.09000 * 109.47075 * 60.00077 * 14 13 12 39 39 H 1.08004 * 120.00218 * 359.97438 * 16 15 14 40 40 H 1.07997 * 120.00142 * 180.22499 * 17 16 15 41 41 H 1.08002 * 120.00158 * 179.72211 * 18 17 16 42 42 H 1.08000 * 119.99675 * 179.97438 * 19 18 17 43 43 H 1.08005 * 119.99823 * 179.97438 * 20 19 18 44 44 H 1.07999 * 121.05596 * 0.02562 * 24 23 21 45 45 H 1.08008 * 120.96536 * 179.78949 * 25 24 23 46 46 H 1.07995 * 119.96898 * 180.25337 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6963 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0016 10 6 2.0580 -3.6569 -0.0016 11 6 1.0637 -4.8197 -0.0022 12 7 1.7962 -6.0885 -0.0029 13 6 2.0280 -6.7999 -1.2624 14 6 0.8688 -7.7634 -1.5247 15 6 1.1075 -8.4957 -2.8200 16 6 0.6305 -7.9730 -4.0075 17 6 0.8537 -8.6421 -5.1963 18 6 1.5447 -9.8394 -5.1963 19 6 2.0172 -10.3647 -4.0082 20 6 1.7982 -9.6931 -2.8200 21 6 2.2568 -6.6013 1.1554 22 8 2.9150 -7.6227 1.1484 23 6 1.9607 -5.9195 2.4370 24 6 2.3137 -6.5181 3.6490 25 6 2.0093 -5.8399 4.8214 26 6 1.3839 -4.6076 4.7183 27 7 1.0901 -4.1117 3.5289 28 7 1.3632 -4.7336 2.4398 29 1 -0.4850 0.8400 -0.0004 30 1 0.3555 -2.3881 -0.0016 31 1 2.6840 -3.7150 0.8887 32 1 2.6852 -3.7143 -0.8911 33 1 0.4374 -4.7618 -0.8925 34 1 0.4367 -4.7622 0.8875 35 1 2.0946 -6.0809 -2.0788 36 1 2.9596 -7.3618 -1.1961 37 1 0.8022 -8.4825 -0.7082 38 1 -0.0629 -7.2015 -1.5909 39 1 0.0864 -7.0400 -4.0069 40 1 0.4842 -8.2319 -6.1245 41 1 1.7152 -10.3645 -6.1246 42 1 2.5567 -11.3003 -4.0082 43 1 2.1670 -10.1038 -1.8917 44 1 2.8047 -7.4798 3.6732 45 1 2.2567 -6.2585 5.7858 46 1 1.1368 -4.0517 5.6106 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162963269.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:14 Heat of formation + Delta-G solvation = 64.908572 kcal Electronic energy + Delta-G solvation = -28738.394445 eV Core-core repulsion = 24822.015410 eV Total energy + Delta-G solvation = -3916.379035 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.33270 -40.77643 -40.00733 -37.78548 -36.20403 -34.68696 -34.10665 -33.42118 -32.96876 -31.74667 -30.06089 -28.93018 -26.62662 -25.74283 -25.50670 -24.48356 -23.45670 -23.28837 -22.00308 -21.01640 -19.41246 -18.80619 -18.11366 -17.81286 -17.64179 -17.15228 -16.93787 -16.43686 -16.21621 -15.98644 -15.68043 -15.52420 -15.29807 -15.06059 -14.93222 -14.62642 -14.33916 -14.16852 -14.09957 -13.96339 -13.69716 -13.19746 -13.03564 -12.92235 -12.71314 -12.57363 -12.21892 -12.11924 -12.05077 -11.95348 -11.78289 -11.70375 -11.25549 -11.19162 -11.04365 -10.80005 -10.53673 -9.98499 -9.79878 -9.49783 -8.91511 -7.88343 -5.15686 -0.54019 -0.17140 0.43794 0.52342 1.47308 1.50746 1.52179 1.56780 1.72048 2.58603 2.62142 2.77664 2.90325 3.37330 3.44215 3.57761 3.76646 3.85718 3.86982 3.95680 4.10714 4.14428 4.18090 4.21079 4.21642 4.29327 4.33269 4.43588 4.53234 4.57655 4.66694 4.72453 4.75866 4.84723 4.91143 4.94767 5.10694 5.15393 5.19196 5.20249 5.35789 5.47171 5.51363 5.60618 5.65018 5.73678 6.11541 6.14648 6.33081 6.80676 7.39792 7.62746 8.14719 8.41139 9.34767 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.008258 B = 0.003376 C = 0.002506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3390.008435 B = 8291.428332 C =11169.408157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.963 5.963 2 C -0.069 4.069 3 Si 0.969 3.031 4 H -0.279 1.279 5 H -0.292 1.292 6 H -0.283 1.283 7 C -0.240 4.240 8 H 0.064 0.936 9 N -0.727 5.727 10 C 0.165 3.835 11 C 0.108 3.892 12 N -0.581 5.581 13 C 0.121 3.879 14 C -0.083 4.083 15 C -0.090 4.090 16 C -0.128 4.128 17 C -0.127 4.127 18 C -0.129 4.129 19 C -0.126 4.126 20 C -0.127 4.127 21 C 0.574 3.426 22 O -0.553 6.553 23 C -0.010 4.010 24 C -0.073 4.073 25 C -0.100 4.100 26 C 0.053 3.947 27 N -0.283 5.283 28 N -0.212 5.212 29 H 0.251 0.749 30 H 0.376 0.624 31 H 0.006 0.994 32 H 0.007 0.993 33 H 0.085 0.915 34 H 0.110 0.890 35 H 0.088 0.912 36 H 0.081 0.919 37 H 0.069 0.931 38 H 0.079 0.921 39 H 0.128 0.872 40 H 0.139 0.861 41 H 0.143 0.857 42 H 0.140 0.860 43 H 0.124 0.876 44 H 0.177 0.823 45 H 0.207 0.793 46 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.329 -22.710 1.864 22.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.614 5.614 2 C -0.261 4.261 3 Si 0.798 3.202 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.209 1.209 7 C -0.372 4.372 8 H 0.082 0.918 9 N -0.370 5.370 10 C 0.037 3.963 11 C -0.015 4.015 12 N -0.311 5.311 13 C -0.001 4.001 14 C -0.122 4.122 15 C -0.091 4.091 16 C -0.146 4.146 17 C -0.145 4.145 18 C -0.147 4.147 19 C -0.144 4.144 20 C -0.145 4.145 21 C 0.361 3.639 22 O -0.431 6.431 23 C -0.156 4.156 24 C -0.102 4.102 25 C -0.129 4.129 26 C -0.110 4.110 27 N -0.124 5.124 28 N -0.058 5.058 29 H 0.060 0.940 30 H 0.209 0.791 31 H 0.024 0.976 32 H 0.025 0.975 33 H 0.104 0.896 34 H 0.127 0.873 35 H 0.106 0.894 36 H 0.099 0.901 37 H 0.088 0.912 38 H 0.098 0.902 39 H 0.146 0.854 40 H 0.157 0.843 41 H 0.160 0.840 42 H 0.158 0.842 43 H 0.142 0.858 44 H 0.194 0.806 45 H 0.224 0.776 46 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 2.171 -21.906 0.943 22.034 hybrid contribution 0.653 0.208 0.779 1.037 sum 2.823 -21.699 1.722 21.949 Atomic orbital electron populations 1.69800 1.06320 1.25953 1.59314 1.25440 0.96356 1.00576 1.03750 0.85291 0.77296 0.79680 0.77946 1.20511 1.21789 1.20932 1.19427 0.90946 0.85448 1.41393 0.91797 1.42141 1.05457 1.00302 1.89055 1.20750 0.93939 0.85522 0.96074 1.22107 0.94275 0.80444 1.04679 1.47839 1.54160 1.22348 1.06719 1.21625 0.99002 0.95202 0.84293 1.20822 0.98780 0.97742 0.94834 1.19790 0.98983 0.95690 0.94622 1.21309 1.00396 1.00466 0.92399 1.21449 0.98912 0.95707 0.98404 1.21487 0.98069 0.96229 0.98928 1.21432 0.99935 1.00631 0.92356 1.21264 0.98972 0.95152 0.99081 1.17863 0.79219 0.83540 0.83314 1.90729 1.40363 1.25055 1.86928 1.22991 1.01076 0.95337 0.96178 1.22658 0.94849 1.01767 0.90915 1.22950 0.94689 0.94027 1.01190 1.25228 0.92467 0.94904 0.98379 1.73310 1.15325 1.27116 0.96698 1.73862 1.06870 1.04540 1.20512 0.94023 0.79135 0.97630 0.97544 0.89629 0.87281 0.89380 0.90072 0.91214 0.90239 0.85440 0.84342 0.83962 0.84182 0.85785 0.80576 0.77555 0.77421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.83 13.06 21.65 0.28 -59.55 16 2 C -0.07 -4.05 5.50 84.86 0.47 -3.58 16 3 Si 0.97 47.45 29.55 68.60 2.03 49.47 16 4 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 5 H -0.29 -14.21 7.11 99.48 0.71 -13.50 16 6 H -0.28 -13.51 7.11 99.48 0.71 -12.80 16 7 C -0.24 -14.00 9.99 84.03 0.84 -13.16 16 8 H 0.06 3.66 7.83 -2.91 -0.02 3.64 16 9 N -0.73 -38.52 5.60 -343.44 -1.92 -40.45 16 10 C 0.17 7.20 5.93 86.38 0.51 7.71 16 11 C 0.11 3.78 5.10 86.38 0.44 4.23 16 12 N -0.58 -17.85 2.49 -824.87 -2.05 -19.90 16 13 C 0.12 3.17 5.38 86.38 0.46 3.63 16 14 C -0.08 -1.91 5.67 29.85 0.17 -1.74 16 15 C -0.09 -1.97 5.13 -19.87 -0.10 -2.07 16 16 C -0.13 -2.63 9.70 22.27 0.22 -2.41 16 17 C -0.13 -2.27 10.05 22.27 0.22 -2.05 16 18 C -0.13 -2.12 10.05 22.27 0.22 -1.90 16 19 C -0.13 -2.18 10.05 22.27 0.22 -1.96 16 20 C -0.13 -2.58 9.70 22.27 0.22 -2.37 16 21 C 0.57 18.29 7.60 86.88 0.66 18.95 16 22 O -0.55 -18.39 15.97 -3.77 -0.06 -18.45 16 23 C -0.01 -0.29 6.59 41.99 0.28 -0.02 16 24 C -0.07 -1.56 9.73 22.77 0.22 -1.34 16 25 C -0.10 -1.54 10.20 22.49 0.23 -1.31 16 26 C 0.05 1.14 11.31 84.72 0.96 2.09 16 27 N -0.28 -9.60 11.51 -57.16 -0.66 -10.26 16 28 N -0.21 -7.51 5.60 -48.49 -0.27 -7.78 16 29 H 0.25 15.10 8.31 -92.71 -0.77 14.33 16 30 H 0.38 20.96 7.67 -92.71 -0.71 20.25 16 31 H 0.01 0.27 6.77 -2.39 -0.02 0.26 16 32 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 33 H 0.09 2.78 8.02 -2.39 -0.02 2.76 16 34 H 0.11 4.08 5.25 -2.74 -0.01 4.06 16 35 H 0.09 2.25 8.07 -2.39 -0.02 2.23 16 36 H 0.08 2.22 7.38 -2.39 -0.02 2.21 16 37 H 0.07 1.66 8.08 -2.38 -0.02 1.64 16 38 H 0.08 1.77 8.08 -2.39 -0.02 1.75 16 39 H 0.13 2.44 8.06 -2.91 -0.02 2.41 16 40 H 0.14 1.91 8.06 -2.91 -0.02 1.88 16 41 H 0.14 1.60 8.06 -2.91 -0.02 1.58 16 42 H 0.14 1.77 8.06 -2.91 -0.02 1.75 16 43 H 0.12 2.39 8.06 -2.91 -0.02 2.37 16 44 H 0.18 3.02 7.73 -2.91 -0.02 3.00 16 45 H 0.21 0.95 8.06 -2.91 -0.02 0.93 16 46 H 0.21 2.75 8.06 -2.91 -0.02 2.72 16 Total: -1.00 -76.80 390.53 3.87 -72.93 By element: Atomic # 1 Polarization: 31.01 SS G_CDS: 0.29 Total: 31.29 kcal Atomic # 6 Polarization: -3.54 SS G_CDS: 6.24 Total: 2.70 kcal Atomic # 7 Polarization: -133.32 SS G_CDS: -4.62 Total: -137.95 kcal Atomic # 8 Polarization: -18.39 SS G_CDS: -0.06 Total: -18.45 kcal Atomic # 14 Polarization: 47.45 SS G_CDS: 2.03 Total: 49.47 kcal Total: -76.80 3.87 -72.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162963269.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.838 kcal (2) G-P(sol) polarization free energy of solvation -76.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.929 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds