Wall clock time and date at job start Sat Apr 11 2020 06:03:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86799 * 119.99643 * 2 1 4 4 H 1.48505 * 109.46868 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47189 * 299.99707 * 3 2 1 6 6 H 1.48502 * 109.47371 * 60.00227 * 3 2 1 7 7 C 1.38809 * 119.99952 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99831 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00460 * 359.97438 * 7 2 1 10 10 C 1.46493 * 120.00228 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.47440 * 183.79997 * 10 9 7 12 12 C 1.53002 * 115.54771 * 294.88825 * 11 10 9 13 13 C 1.53002 * 109.47137 * 277.17475 * 12 11 10 14 14 N 1.46496 * 109.47025 * 184.67386 * 13 12 11 15 15 C 1.34780 * 119.99944 * 180.02562 * 14 13 12 16 16 O 1.21540 * 119.99868 * 359.97438 * 15 14 13 17 17 C 1.47908 * 120.00269 * 180.02562 * 15 14 13 18 18 N 1.32384 * 120.63360 * 5.62233 * 17 15 14 19 19 N 1.28091 * 123.18141 * 180.02562 * 18 17 15 20 20 C 1.31804 * 123.49347 * 359.38855 * 19 18 17 21 21 C 1.40412 * 119.13628 * 0.90756 * 20 19 18 22 22 C 1.40232 * 122.73936 * 179.11765 * 21 20 19 23 23 C 1.36246 * 119.37008 * 180.02562 * 22 21 20 24 24 C 1.39382 * 121.07515 * 359.97438 * 23 22 21 25 25 C 1.36360 * 121.08952 * 0.02562 * 24 23 22 26 26 C 1.39840 * 119.41692 * 0.27458 * 25 24 23 27 27 C 1.52997 * 117.51764 * 80.58533 * 11 10 9 28 28 C 1.52995 * 60.00264 * 107.48482 * 27 11 10 29 29 H 0.96998 * 119.99922 * 0.02562 * 1 2 3 30 30 H 0.97002 * 119.99485 * 0.02562 * 9 7 2 31 31 H 1.09004 * 109.47342 * 63.79559 * 10 9 7 32 32 H 1.08998 * 109.47208 * 303.80235 * 10 9 7 33 33 H 1.09002 * 109.46890 * 157.17778 * 12 11 10 34 34 H 1.09001 * 109.47448 * 37.17767 * 12 11 10 35 35 H 1.08998 * 109.46556 * 64.67488 * 13 12 11 36 36 H 1.08998 * 109.47149 * 304.67567 * 13 12 11 37 37 H 0.97002 * 120.00149 * 359.97438 * 14 13 12 38 38 H 1.08005 * 120.43035 * 180.02562 * 20 19 18 39 39 H 1.08004 * 120.31453 * 0.04190 * 22 21 20 40 40 H 1.08003 * 119.46509 * 179.97438 * 23 22 21 41 41 H 1.07997 * 119.45628 * 179.97438 * 24 23 22 42 42 H 1.07996 * 120.29506 * 180.02562 * 25 24 23 43 43 H 1.09004 * 117.49917 * 214.97408 * 27 11 10 44 44 H 1.09004 * 117.50380 * 359.97438 * 27 11 10 45 45 H 1.08994 * 117.50089 * 252.51585 * 28 27 11 46 46 H 1.09006 * 117.49701 * 107.48540 * 28 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3257 -2.3881 0.0016 10 6 2.0582 -3.6567 0.0027 11 6 1.0668 -4.8182 -0.0918 12 6 0.1261 -4.9818 1.1037 13 6 0.8405 -5.7574 2.2123 14 7 -0.0944 -6.0111 3.3113 15 6 0.3170 -6.6835 4.4045 16 8 1.4636 -7.0798 4.4784 17 6 -0.6270 -6.9402 5.5138 18 7 -1.9051 -6.6140 5.4010 19 7 -2.7641 -6.8134 6.3300 20 6 -2.4684 -7.3728 7.4862 21 6 -1.1428 -7.7608 7.7388 22 6 -0.7411 -8.3454 8.9485 23 6 0.5643 -8.6953 9.1205 24 6 1.5049 -8.4821 8.1142 25 6 1.1487 -7.9161 6.9259 26 6 -0.1813 -7.5384 6.7163 27 6 0.5170 -5.1674 -1.4762 28 6 1.5343 -6.0901 -0.8022 29 1 -0.4850 0.8400 -0.0004 30 1 0.3556 -2.3881 0.0016 31 1 2.6329 -3.7437 0.9249 32 1 2.7349 -3.6863 -0.8512 33 1 -0.7642 -5.5288 0.7933 34 1 -0.1627 -3.9989 1.4760 35 1 1.6833 -5.1721 2.5801 36 1 1.2023 -6.7064 1.8167 37 1 -1.0095 -5.6945 3.2524 38 1 -3.2330 -7.5177 8.2352 39 1 -1.4598 -8.5168 9.7363 40 1 0.8755 -9.1453 10.0517 41 1 2.5330 -8.7692 8.2787 42 1 1.8880 -7.7572 6.1548 43 1 -0.5149 -5.5137 -1.5353 44 1 0.8612 -4.5693 -2.3201 45 1 2.5481 -6.0993 -1.2024 46 1 1.1717 -7.0435 -0.4177 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166116868.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:28 Heat of formation + Delta-G solvation = 77.918209 kcal Electronic energy + Delta-G solvation = -27987.750309 eV Core-core repulsion = 24071.935413 eV Total energy + Delta-G solvation = -3915.814895 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.86040 -39.64497 -38.43396 -38.24978 -35.04557 -33.89709 -33.78186 -32.20528 -31.09881 -30.74127 -29.79655 -26.36425 -25.78901 -24.68122 -23.85191 -22.85811 -22.68889 -21.76991 -21.17511 -19.15804 -18.61219 -18.33150 -17.61554 -17.03965 -16.52321 -16.07950 -15.98930 -15.32849 -15.07961 -14.95214 -14.83584 -14.42657 -14.32564 -14.14314 -13.69690 -13.39905 -13.09362 -12.99819 -12.74927 -12.63324 -12.33404 -12.01768 -11.93165 -11.78207 -11.44788 -11.10690 -10.98474 -10.93415 -10.83256 -10.56095 -10.13759 -10.09351 -9.92028 -9.87585 -9.81088 -9.65948 -9.30552 -9.18983 -8.87673 -8.82317 -6.87132 -5.73324 -3.01201 -0.44723 0.17816 1.17392 2.25994 2.77126 2.81098 3.45380 3.51025 3.53211 3.53587 3.58612 3.92708 4.03347 4.08954 4.17309 4.27966 4.59881 4.63629 4.64663 4.76814 5.02289 5.03940 5.10507 5.16514 5.20426 5.29901 5.30877 5.49108 5.52849 5.60793 5.68315 5.73744 5.76019 5.89616 5.93008 5.93263 6.11793 6.19673 6.25285 6.27312 6.40988 6.45351 6.49151 6.57049 6.78038 6.85987 7.30590 7.73583 7.93249 8.33266 8.45824 9.57368 10.15995 10.51437 11.49601 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012639 B = 0.002269 C = 0.002145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2214.841295 B =12339.551410 C =13053.165262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.015 4.015 3 Si 0.905 3.095 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.237 4.237 8 H 0.070 0.930 9 N -0.728 5.728 10 C 0.188 3.812 11 C -0.119 4.119 12 C -0.093 4.093 13 C 0.121 3.879 14 N -0.698 5.698 15 C 0.577 3.423 16 O -0.528 6.528 17 C 0.071 3.929 18 N -0.228 5.228 19 N -0.263 5.263 20 C 0.102 3.898 21 C -0.086 4.086 22 C -0.097 4.097 23 C -0.095 4.095 24 C -0.101 4.101 25 C -0.090 4.090 26 C -0.047 4.047 27 C -0.162 4.162 28 C -0.178 4.178 29 H 0.254 0.746 30 H 0.385 0.615 31 H 0.021 0.979 32 H 0.022 0.978 33 H 0.065 0.935 34 H 0.088 0.912 35 H 0.078 0.922 36 H 0.072 0.928 37 H 0.413 0.587 38 H 0.182 0.818 39 H 0.141 0.859 40 H 0.134 0.866 41 H 0.135 0.865 42 H 0.175 0.825 43 H 0.089 0.911 44 H 0.096 0.904 45 H 0.092 0.908 46 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.208 -22.321 17.120 28.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.211 4.211 3 Si 0.737 3.263 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.368 4.368 8 H 0.088 0.912 9 N -0.372 5.372 10 C 0.060 3.940 11 C -0.120 4.120 12 C -0.131 4.131 13 C -0.001 4.001 14 N -0.348 5.348 15 C 0.360 3.640 16 O -0.405 6.405 17 C -0.087 4.087 18 N -0.065 5.065 19 N -0.095 5.095 20 C -0.072 4.072 21 C -0.094 4.094 22 C -0.117 4.117 23 C -0.115 4.115 24 C -0.121 4.121 25 C -0.109 4.109 26 C -0.055 4.055 27 C -0.200 4.200 28 C -0.216 4.216 29 H 0.064 0.936 30 H 0.219 0.781 31 H 0.039 0.961 32 H 0.040 0.960 33 H 0.084 0.916 34 H 0.107 0.893 35 H 0.096 0.904 36 H 0.090 0.910 37 H 0.249 0.751 38 H 0.199 0.801 39 H 0.159 0.841 40 H 0.151 0.849 41 H 0.153 0.847 42 H 0.192 0.808 43 H 0.107 0.893 44 H 0.114 0.886 45 H 0.111 0.889 46 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -2.495 -21.738 16.085 27.156 hybrid contribution 0.666 0.510 1.010 1.312 sum -1.829 -21.228 17.094 27.317 Atomic orbital electron populations 1.69670 1.05050 1.25448 1.57972 1.24724 0.95519 0.97613 1.03200 0.86137 0.78792 0.84254 0.77150 1.20602 1.21918 1.21926 1.19271 0.91033 0.84169 1.42326 0.91225 1.42309 1.05934 0.99655 1.89324 1.20177 0.91788 0.84147 0.97852 1.21549 1.00879 0.96948 0.92623 1.21281 0.96960 1.01553 0.93299 1.21543 0.92349 1.00437 0.85797 1.45957 1.16338 1.55002 1.17504 1.17411 0.86092 0.79014 0.81523 1.90626 1.18312 1.52249 1.79303 1.23008 0.93869 0.97225 0.94583 1.72748 0.99516 1.11891 1.22316 1.72668 1.26550 1.11243 0.99036 1.24855 0.94771 0.91403 0.96192 1.18926 0.94346 1.00486 0.95630 1.20952 0.97048 0.98111 0.95567 1.21187 0.93126 0.97720 0.99431 1.21302 1.00421 0.97338 0.93014 1.22053 0.95448 0.94597 0.98802 1.18617 0.95589 0.98207 0.93048 1.22966 0.98240 1.02611 0.96139 1.22987 0.99751 0.93979 1.04846 0.93620 0.78123 0.96140 0.96011 0.91589 0.89317 0.90416 0.91021 0.75053 0.80131 0.84122 0.84859 0.84700 0.80777 0.89291 0.88560 0.88928 0.89253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.34 13.06 55.49 0.72 -27.62 16 2 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 3 Si 0.91 22.68 29.55 -169.99 -5.02 17.66 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 6 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 7 C -0.24 -6.67 9.99 -15.06 -0.15 -6.82 16 8 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 9 N -0.73 -18.34 5.38 -59.91 -0.32 -18.66 16 10 C 0.19 3.79 6.09 -4.05 -0.02 3.77 16 11 C -0.12 -1.90 1.56 -154.51 -0.24 -2.14 16 12 C -0.09 -1.36 5.23 -26.73 -0.14 -1.50 16 13 C 0.12 1.67 5.60 -4.04 -0.02 1.65 16 14 N -0.70 -9.27 5.55 -61.23 -0.34 -9.61 16 15 C 0.58 8.10 7.78 -12.30 -0.10 8.00 16 16 O -0.53 -8.11 13.59 5.33 0.07 -8.04 16 17 C 0.07 0.93 6.90 -82.42 -0.57 0.36 16 18 N -0.23 -3.09 10.70 33.56 0.36 -2.73 16 19 N -0.26 -3.25 11.42 30.90 0.35 -2.89 16 20 C 0.10 0.89 11.20 -16.75 -0.19 0.71 16 21 C -0.09 -0.79 5.75 -106.85 -0.61 -1.40 16 22 C -0.10 -0.59 9.84 -39.55 -0.39 -0.98 16 23 C -0.10 -0.54 9.95 -39.87 -0.40 -0.94 16 24 C -0.10 -0.74 9.95 -39.83 -0.40 -1.13 16 25 C -0.09 -0.93 9.27 -39.66 -0.37 -1.30 16 26 C -0.05 -0.54 5.77 -106.57 -0.61 -1.16 16 27 C -0.16 -2.41 9.90 -26.74 -0.26 -2.68 16 28 C -0.18 -2.36 9.40 -26.73 -0.25 -2.61 16 29 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 30 H 0.38 10.17 7.16 -40.82 -0.29 9.88 16 31 H 0.02 0.43 8.08 -51.93 -0.42 0.01 16 32 H 0.02 0.45 8.09 -51.93 -0.42 0.03 16 33 H 0.07 0.85 7.92 -51.93 -0.41 0.44 16 34 H 0.09 1.53 7.44 -51.93 -0.39 1.14 16 35 H 0.08 1.20 8.08 -51.93 -0.42 0.78 16 36 H 0.07 0.94 7.33 -51.93 -0.38 0.56 16 37 H 0.41 5.13 7.87 -40.82 -0.32 4.81 16 38 H 0.18 0.80 8.06 -52.48 -0.42 0.38 16 39 H 0.14 0.39 8.06 -52.48 -0.42 -0.03 16 40 H 0.13 0.37 8.06 -52.48 -0.42 -0.05 16 41 H 0.14 0.67 8.06 -52.49 -0.42 0.24 16 42 H 0.18 2.03 5.12 -52.49 -0.27 1.76 16 43 H 0.09 1.20 8.07 -51.93 -0.42 0.78 16 44 H 0.10 1.55 8.14 -51.93 -0.42 1.12 16 45 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 46 H 0.09 1.04 7.77 -51.93 -0.40 0.64 16 LS Contribution 387.81 15.07 5.84 5.84 Total: -1.00 -33.78 387.81 -9.38 -43.15 By element: Atomic # 1 Polarization: 17.81 SS G_CDS: -6.22 Total: 11.58 kcal Atomic # 6 Polarization: -3.86 SS G_CDS: -4.82 Total: -8.68 kcal Atomic # 7 Polarization: -62.29 SS G_CDS: 0.77 Total: -61.52 kcal Atomic # 8 Polarization: -8.11 SS G_CDS: 0.07 Total: -8.04 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -5.02 Total: 17.66 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.78 -9.38 -43.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166116868.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.071 kcal (2) G-P(sol) polarization free energy of solvation -33.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.153 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds