Wall clock time and date at job start Sat Apr 11 2020 06:03:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86799 * 119.99643 * 2 1 4 4 H 1.48505 * 109.46868 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47189 * 299.99707 * 3 2 1 6 6 H 1.48502 * 109.47371 * 60.00227 * 3 2 1 7 7 C 1.38809 * 119.99952 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99831 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00460 * 359.97438 * 7 2 1 10 10 C 1.46493 * 120.00228 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.47440 * 183.79997 * 10 9 7 12 12 C 1.53002 * 115.54771 * 294.88825 * 11 10 9 13 13 C 1.53002 * 109.47137 * 277.17475 * 12 11 10 14 14 N 1.46496 * 109.47025 * 184.67386 * 13 12 11 15 15 C 1.34780 * 119.99944 * 180.02562 * 14 13 12 16 16 O 1.21540 * 119.99868 * 359.97438 * 15 14 13 17 17 C 1.47908 * 120.00269 * 180.02562 * 15 14 13 18 18 N 1.32384 * 120.63360 * 5.62233 * 17 15 14 19 19 N 1.28091 * 123.18141 * 180.02562 * 18 17 15 20 20 C 1.31804 * 123.49347 * 359.38855 * 19 18 17 21 21 C 1.40412 * 119.13628 * 0.90756 * 20 19 18 22 22 C 1.40232 * 122.73936 * 179.11765 * 21 20 19 23 23 C 1.36246 * 119.37008 * 180.02562 * 22 21 20 24 24 C 1.39382 * 121.07515 * 359.97438 * 23 22 21 25 25 C 1.36360 * 121.08952 * 0.02562 * 24 23 22 26 26 C 1.39840 * 119.41692 * 0.27458 * 25 24 23 27 27 C 1.52997 * 117.51764 * 80.58533 * 11 10 9 28 28 C 1.52995 * 60.00264 * 107.48482 * 27 11 10 29 29 H 0.96998 * 119.99922 * 0.02562 * 1 2 3 30 30 H 0.97002 * 119.99485 * 0.02562 * 9 7 2 31 31 H 1.09004 * 109.47342 * 63.79559 * 10 9 7 32 32 H 1.08998 * 109.47208 * 303.80235 * 10 9 7 33 33 H 1.09002 * 109.46890 * 157.17778 * 12 11 10 34 34 H 1.09001 * 109.47448 * 37.17767 * 12 11 10 35 35 H 1.08998 * 109.46556 * 64.67488 * 13 12 11 36 36 H 1.08998 * 109.47149 * 304.67567 * 13 12 11 37 37 H 0.97002 * 120.00149 * 359.97438 * 14 13 12 38 38 H 1.08005 * 120.43035 * 180.02562 * 20 19 18 39 39 H 1.08004 * 120.31453 * 0.04190 * 22 21 20 40 40 H 1.08003 * 119.46509 * 179.97438 * 23 22 21 41 41 H 1.07997 * 119.45628 * 179.97438 * 24 23 22 42 42 H 1.07996 * 120.29506 * 180.02562 * 25 24 23 43 43 H 1.09004 * 117.49917 * 214.97408 * 27 11 10 44 44 H 1.09004 * 117.50380 * 359.97438 * 27 11 10 45 45 H 1.08994 * 117.50089 * 252.51585 * 28 27 11 46 46 H 1.09006 * 117.49701 * 107.48540 * 28 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3257 -2.3881 0.0016 10 6 2.0582 -3.6567 0.0027 11 6 1.0668 -4.8182 -0.0918 12 6 0.1261 -4.9818 1.1037 13 6 0.8405 -5.7574 2.2123 14 7 -0.0944 -6.0111 3.3113 15 6 0.3170 -6.6835 4.4045 16 8 1.4636 -7.0798 4.4784 17 6 -0.6270 -6.9402 5.5138 18 7 -1.9051 -6.6140 5.4010 19 7 -2.7641 -6.8134 6.3300 20 6 -2.4684 -7.3728 7.4862 21 6 -1.1428 -7.7608 7.7388 22 6 -0.7411 -8.3454 8.9485 23 6 0.5643 -8.6953 9.1205 24 6 1.5049 -8.4821 8.1142 25 6 1.1487 -7.9161 6.9259 26 6 -0.1813 -7.5384 6.7163 27 6 0.5170 -5.1674 -1.4762 28 6 1.5343 -6.0901 -0.8022 29 1 -0.4850 0.8400 -0.0004 30 1 0.3556 -2.3881 0.0016 31 1 2.6329 -3.7437 0.9249 32 1 2.7349 -3.6863 -0.8512 33 1 -0.7642 -5.5288 0.7933 34 1 -0.1627 -3.9989 1.4760 35 1 1.6833 -5.1721 2.5801 36 1 1.2023 -6.7064 1.8167 37 1 -1.0095 -5.6945 3.2524 38 1 -3.2330 -7.5177 8.2352 39 1 -1.4598 -8.5168 9.7363 40 1 0.8755 -9.1453 10.0517 41 1 2.5330 -8.7692 8.2787 42 1 1.8880 -7.7572 6.1548 43 1 -0.5149 -5.5137 -1.5353 44 1 0.8612 -4.5693 -2.3201 45 1 2.5481 -6.0993 -1.2024 46 1 1.1717 -7.0435 -0.4177 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166116868.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:27 Heat of formation + Delta-G solvation = 55.415214 kcal Electronic energy + Delta-G solvation = -27988.726112 eV Core-core repulsion = 24071.935413 eV Total energy + Delta-G solvation = -3916.790698 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.62521 -40.69930 -39.53947 -39.08662 -36.26442 -35.77388 -34.56103 -32.87015 -32.78537 -31.87388 -30.82646 -27.89388 -26.96531 -25.37810 -24.85911 -24.60736 -23.68724 -22.92494 -22.18983 -20.26599 -19.60205 -19.20968 -18.96875 -18.43581 -17.33755 -17.08606 -17.00787 -16.68560 -16.33128 -15.94253 -15.77820 -15.62982 -15.52723 -15.09786 -14.94806 -14.78384 -14.51024 -14.18021 -13.91420 -13.65017 -13.31356 -13.20449 -13.03413 -12.82859 -12.63967 -12.60131 -12.57064 -12.26531 -12.12303 -11.94351 -11.81581 -11.75133 -11.14374 -10.98109 -10.90272 -10.83765 -10.57402 -10.44218 -10.27243 -9.56163 -8.97590 -7.95157 -5.22876 -1.17446 -0.50245 0.50605 1.41453 1.45409 1.46219 1.56251 1.78732 2.01335 2.53550 2.70503 2.84643 2.88660 3.24252 3.35663 3.38212 3.55582 3.66845 3.81589 3.82827 3.89605 3.96337 4.03123 4.17522 4.21048 4.22996 4.39909 4.41951 4.47480 4.55815 4.61018 4.76053 4.84216 4.87505 4.92757 4.98381 5.08232 5.13091 5.19313 5.24583 5.26426 5.29495 5.34185 5.36786 5.44506 5.48621 5.74251 6.23912 6.27346 6.87406 7.34107 7.52651 8.11115 8.35900 9.28476 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012639 B = 0.002269 C = 0.002145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2214.841295 B =12339.551410 C =13053.165262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.076 4.076 3 Si 0.971 3.029 4 H -0.268 1.268 5 H -0.292 1.292 6 H -0.294 1.294 7 C -0.243 4.243 8 H 0.072 0.928 9 N -0.738 5.738 10 C 0.187 3.813 11 C -0.138 4.138 12 C -0.080 4.080 13 C 0.132 3.868 14 N -0.697 5.697 15 C 0.574 3.426 16 O -0.549 6.549 17 C 0.046 3.954 18 N -0.248 5.248 19 N -0.304 5.304 20 C 0.120 3.880 21 C -0.102 4.102 22 C -0.080 4.080 23 C -0.093 4.093 24 C -0.086 4.086 25 C -0.125 4.125 26 C -0.069 4.069 27 C -0.165 4.165 28 C -0.147 4.147 29 H 0.251 0.749 30 H 0.376 0.624 31 H 0.015 0.985 32 H 0.020 0.980 33 H 0.087 0.913 34 H 0.056 0.944 35 H 0.055 0.945 36 H 0.084 0.916 37 H 0.416 0.584 38 H 0.228 0.772 39 H 0.185 0.815 40 H 0.175 0.825 41 H 0.158 0.842 42 H 0.152 0.848 43 H 0.105 0.895 44 H 0.080 0.920 45 H 0.099 0.901 46 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.138 -24.565 19.686 31.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.268 4.268 3 Si 0.800 3.200 4 H -0.192 1.192 5 H -0.219 1.219 6 H -0.221 1.221 7 C -0.375 4.375 8 H 0.090 0.910 9 N -0.380 5.380 10 C 0.061 3.939 11 C -0.139 4.139 12 C -0.118 4.118 13 C 0.009 3.991 14 N -0.347 5.347 15 C 0.358 3.642 16 O -0.427 6.427 17 C -0.112 4.112 18 N -0.084 5.084 19 N -0.136 5.136 20 C -0.053 4.053 21 C -0.110 4.110 22 C -0.099 4.099 23 C -0.112 4.112 24 C -0.105 4.105 25 C -0.145 4.145 26 C -0.076 4.076 27 C -0.202 4.202 28 C -0.184 4.184 29 H 0.060 0.940 30 H 0.208 0.792 31 H 0.033 0.967 32 H 0.038 0.962 33 H 0.106 0.894 34 H 0.075 0.925 35 H 0.073 0.927 36 H 0.102 0.898 37 H 0.253 0.747 38 H 0.245 0.755 39 H 0.202 0.798 40 H 0.192 0.808 41 H 0.175 0.825 42 H 0.169 0.831 43 H 0.124 0.876 44 H 0.099 0.901 45 H 0.118 0.882 46 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -2.405 -24.008 18.643 30.491 hybrid contribution 0.705 1.081 0.378 1.345 sum -1.700 -22.927 19.021 29.838 Atomic orbital electron populations 1.69822 1.06494 1.25905 1.59610 1.25535 0.96417 1.00958 1.03874 0.85102 0.78197 0.79963 0.76691 1.19199 1.21874 1.22114 1.19654 0.91397 0.85484 1.40961 0.90977 1.42481 1.05683 1.00736 1.89114 1.20253 0.92556 0.83907 0.97175 1.21371 1.01315 0.97309 0.93938 1.21116 0.97534 1.00166 0.92990 1.21369 0.91660 1.00396 0.85672 1.45932 1.16347 1.54990 1.17429 1.17679 0.86154 0.78538 0.81809 1.90612 1.19150 1.53092 1.79802 1.22863 0.93805 0.99335 0.95211 1.72627 0.99761 1.12446 1.23597 1.72577 1.26678 1.13817 1.00527 1.25577 0.95798 0.88381 0.95497 1.19252 0.93986 1.01334 0.96384 1.21495 0.98164 0.95455 0.94802 1.21667 0.92565 0.96759 1.00200 1.21679 1.02133 0.94804 0.91929 1.21906 0.94860 0.97619 1.00104 1.18838 0.96752 0.98757 0.93294 1.23006 0.99705 1.02955 0.94539 1.23075 0.99769 0.93496 1.02084 0.94046 0.79184 0.96695 0.96173 0.89424 0.92521 0.92705 0.89787 0.74702 0.75533 0.79769 0.80800 0.82453 0.83112 0.87637 0.90119 0.88229 0.86742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.41 13.06 21.65 0.28 -60.13 16 2 C -0.08 -4.45 5.50 84.86 0.47 -3.99 16 3 Si 0.97 47.41 29.55 68.60 2.03 49.43 16 4 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 5 H -0.29 -14.12 7.11 99.48 0.71 -13.42 16 6 H -0.29 -14.33 7.11 99.48 0.71 -13.63 16 7 C -0.24 -13.98 9.99 84.03 0.84 -13.14 16 8 H 0.07 4.02 7.83 -2.91 -0.02 4.00 16 9 N -0.74 -38.42 5.38 -343.47 -1.85 -40.27 16 10 C 0.19 7.77 6.09 86.38 0.53 8.30 16 11 C -0.14 -4.42 1.56 -52.18 -0.08 -4.51 16 12 C -0.08 -2.41 5.23 30.60 0.16 -2.25 16 13 C 0.13 3.79 5.60 86.38 0.48 4.27 16 14 N -0.70 -19.76 5.55 -465.92 -2.58 -22.34 16 15 C 0.57 17.36 7.78 86.80 0.68 18.04 16 16 O -0.55 -18.12 13.59 -3.84 -0.05 -18.17 16 17 C 0.05 1.29 6.90 42.43 0.29 1.58 16 18 N -0.25 -7.08 10.70 -47.74 -0.51 -7.59 16 19 N -0.30 -7.52 11.42 -56.14 -0.64 -8.16 16 20 C 0.12 1.88 11.20 85.23 0.95 2.84 16 21 C -0.10 -1.67 5.75 -21.31 -0.12 -1.79 16 22 C -0.08 -0.62 9.84 22.29 0.22 -0.40 16 23 C -0.09 -0.66 9.95 22.08 0.22 -0.44 16 24 C -0.09 -1.08 9.95 22.11 0.22 -0.86 16 25 C -0.13 -2.65 9.27 22.22 0.21 -2.44 16 26 C -0.07 -1.62 5.77 -21.12 -0.12 -1.74 16 27 C -0.16 -4.76 9.90 30.59 0.30 -4.46 16 28 C -0.15 -3.63 9.40 30.59 0.29 -3.34 16 29 H 0.25 15.13 8.31 -92.71 -0.77 14.36 16 30 H 0.38 20.72 7.16 -92.71 -0.66 20.05 16 31 H 0.02 0.65 8.08 -2.38 -0.02 0.63 16 32 H 0.02 0.85 8.09 -2.39 -0.02 0.83 16 33 H 0.09 2.24 7.92 -2.39 -0.02 2.22 16 34 H 0.06 2.07 7.44 -2.39 -0.02 2.05 16 35 H 0.05 1.82 8.08 -2.39 -0.02 1.80 16 36 H 0.08 2.20 7.33 -2.39 -0.02 2.18 16 37 H 0.42 11.16 7.87 -92.71 -0.73 10.43 16 38 H 0.23 1.07 8.06 -2.91 -0.02 1.05 16 39 H 0.19 -0.19 8.06 -2.91 -0.02 -0.21 16 40 H 0.17 -0.11 8.06 -2.91 -0.02 -0.13 16 41 H 0.16 1.15 8.06 -2.91 -0.02 1.12 16 42 H 0.15 3.84 5.12 -2.91 -0.01 3.82 16 43 H 0.11 2.69 8.07 -2.38 -0.02 2.67 16 44 H 0.08 2.59 8.14 -2.38 -0.02 2.57 16 45 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 46 H 0.11 2.32 7.77 -2.38 -0.02 2.30 16 Total: -1.00 -77.97 387.81 1.84 -76.13 By element: Atomic # 1 Polarization: 35.77 SS G_CDS: -0.36 Total: 35.41 kcal Atomic # 6 Polarization: -9.85 SS G_CDS: 5.53 Total: -4.32 kcal Atomic # 7 Polarization: -133.18 SS G_CDS: -5.30 Total: -138.48 kcal Atomic # 8 Polarization: -18.12 SS G_CDS: -0.05 Total: -18.17 kcal Atomic # 14 Polarization: 47.41 SS G_CDS: 2.03 Total: 49.43 kcal Total: -77.97 1.84 -76.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166116868.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.543 kcal (2) G-P(sol) polarization free energy of solvation -77.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.128 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds