Wall clock time and date at job start Sat Apr 11 2020 06:03:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 120.00033 * 2 1 4 4 H 1.48496 * 109.47281 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47153 * 300.00224 * 3 2 1 6 6 H 1.48501 * 109.46972 * 60.00215 * 3 2 1 7 7 C 1.38812 * 120.00104 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99871 * 179.97438 * 7 2 1 9 9 N 1.36932 * 120.00196 * 0.02562 * 7 2 1 10 10 C 1.46502 * 120.00418 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47443 * 180.02562 * 10 9 7 12 12 C 1.53040 * 109.46148 * 175.00317 * 11 10 9 13 13 C 1.53193 * 109.31229 * 181.36831 * 12 11 10 14 14 N 1.46919 * 108.77871 * 305.36756 * 13 12 11 15 15 C 1.34783 * 120.62820 * 233.58643 * 14 13 12 16 16 O 1.21536 * 120.00228 * 5.07761 * 15 14 13 17 17 C 1.47913 * 119.99751 * 185.08059 * 15 14 13 18 18 N 1.32377 * 120.63536 * 75.35912 * 17 15 14 19 19 N 1.28090 * 123.17597 * 180.27011 * 18 17 15 20 20 C 1.31790 * 123.50179 * 0.02562 * 19 18 17 21 21 C 1.40413 * 119.13914 * 0.02562 * 20 19 18 22 22 C 1.40236 * 122.74329 * 179.97438 * 21 20 19 23 23 C 1.36254 * 119.36550 * 180.02562 * 22 21 20 24 24 C 1.39384 * 121.07789 * 359.97438 * 23 22 21 25 25 C 1.36362 * 121.08732 * 0.02562 * 24 23 22 26 26 C 1.39839 * 119.41542 * 0.02562 * 25 24 23 27 27 C 1.46931 * 118.74082 * 53.85534 * 14 13 12 28 28 C 1.53040 * 109.44664 * 295.06295 * 11 10 9 29 29 H 0.96995 * 120.00238 * 359.97438 * 1 2 3 30 30 H 0.96996 * 120.00144 * 359.97438 * 9 7 2 31 31 H 1.09003 * 109.46761 * 59.99950 * 10 9 7 32 32 H 1.08994 * 109.47383 * 300.00462 * 10 9 7 33 33 H 1.08998 * 109.46254 * 55.02799 * 11 10 9 34 34 H 1.08997 * 109.49674 * 61.41925 * 12 11 10 35 35 H 1.08996 * 109.52283 * 301.33906 * 12 11 10 36 36 H 1.09005 * 109.58428 * 185.57471 * 13 12 11 37 37 H 1.09006 * 109.70219 * 65.22554 * 13 12 11 38 38 H 1.08002 * 120.43202 * 180.02562 * 20 19 18 39 39 H 1.07996 * 120.31846 * 0.04510 * 22 21 20 40 40 H 1.07994 * 119.46341 * 179.97438 * 23 22 21 41 41 H 1.07997 * 119.45493 * 179.97438 * 24 23 22 42 42 H 1.07990 * 120.29293 * 180.02562 * 25 24 23 43 43 H 1.09000 * 109.58186 * 65.92824 * 27 14 13 44 44 H 1.08997 * 109.58638 * 186.35021 * 27 14 13 45 45 H 1.09000 * 109.50043 * 298.57350 * 28 11 10 46 46 H 1.09001 * 109.50072 * 58.67374 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0016 10 6 2.0581 -3.6568 -0.0027 11 6 1.0639 -4.8197 -0.0044 12 6 1.8253 -6.1412 -0.1313 13 6 0.8249 -7.3009 -0.1670 14 7 -0.0414 -7.2148 1.0165 15 6 -0.1834 -8.2709 1.8418 16 8 0.4779 -9.2749 1.6633 17 6 -1.1440 -8.2079 2.9648 18 7 -2.4451 -8.3160 2.7463 19 7 -3.3195 -8.2633 3.6809 20 6 -3.0161 -8.0962 4.9524 21 6 -1.6677 -7.9665 5.3222 22 6 -1.2599 -7.7854 6.6517 23 6 0.0680 -7.6668 6.9330 24 6 1.0255 -7.7231 5.9216 25 6 0.6639 -7.8981 4.6186 26 6 -0.6902 -8.0226 4.2924 27 6 -0.7548 -5.9576 1.2799 28 6 0.2677 -4.8112 1.3025 29 1 -0.4850 0.8400 0.0004 30 1 0.3557 -2.3881 -0.0016 31 1 2.6848 -3.7153 0.8872 32 1 2.6848 -3.7138 -0.8927 33 1 0.3805 -4.7121 -0.8467 34 1 2.4908 -6.2611 0.7235 35 1 2.4109 -6.1374 -1.0506 36 1 1.3635 -8.2485 -0.1576 37 1 0.2177 -7.2347 -1.0699 38 1 -3.7944 -8.0595 5.7003 39 1 -1.9913 -7.7408 7.4450 40 1 0.3838 -7.5269 7.9562 41 1 2.0710 -7.6257 6.1742 42 1 1.4165 -7.9403 3.8453 43 1 -1.4878 -5.7816 0.4926 44 1 -1.2589 -6.0187 2.2444 45 1 0.9479 -4.9437 2.1439 46 1 -0.2558 -3.8605 1.4035 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205666466.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:52 Heat of formation + Delta-G solvation = 29.366021 kcal Electronic energy + Delta-G solvation = -29239.591413 eV Core-core repulsion = 25321.671137 eV Total energy + Delta-G solvation = -3917.920276 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.71423 -41.12787 -39.09741 -39.05105 -36.63330 -34.92349 -34.33193 -32.97357 -32.42457 -32.00408 -31.50271 -28.52496 -26.91526 -25.61097 -25.35171 -24.47569 -24.15710 -23.08004 -21.78845 -20.68934 -19.56164 -19.34832 -19.08817 -18.49166 -17.70635 -17.05923 -16.72355 -16.36263 -16.03190 -15.73817 -15.69916 -15.54888 -15.41548 -15.34884 -15.07287 -14.85034 -14.58767 -14.15895 -14.01010 -13.69189 -13.63977 -13.26721 -13.18873 -12.96030 -12.79267 -12.73599 -12.42545 -12.29866 -12.12553 -11.97791 -11.80708 -11.72323 -11.60739 -11.37028 -11.15927 -10.93233 -10.86299 -10.46118 -9.90467 -9.61588 -8.97980 -7.94610 -5.22700 -1.03634 -0.52787 0.55403 1.07024 1.47818 1.48225 1.57057 1.58284 1.80915 2.56366 2.68162 2.79632 3.14970 3.25009 3.39181 3.50420 3.59251 3.64056 3.71789 3.74870 3.83635 4.01271 4.09414 4.17184 4.20969 4.26505 4.28965 4.38049 4.51459 4.52756 4.64155 4.69539 4.71413 4.79848 4.83069 4.88397 4.94482 5.06263 5.09107 5.11653 5.17001 5.23160 5.29446 5.41186 5.46964 5.52253 5.66485 6.00412 6.28097 6.67902 7.34784 7.54596 8.11130 8.34472 9.29014 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012288 B = 0.002837 C = 0.002622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2278.082338 B = 9865.857775 C =10677.374467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.074 4.074 3 Si 0.971 3.029 4 H -0.267 1.267 5 H -0.294 1.294 6 H -0.293 1.293 7 C -0.244 4.244 8 H 0.074 0.926 9 N -0.744 5.744 10 C 0.158 3.842 11 C -0.085 4.085 12 C -0.113 4.113 13 C 0.112 3.888 14 N -0.587 5.587 15 C 0.586 3.414 16 O -0.556 6.556 17 C 0.064 3.936 18 N -0.260 5.260 19 N -0.302 5.302 20 C 0.112 3.888 21 C -0.097 4.097 22 C -0.075 4.075 23 C -0.092 4.092 24 C -0.078 4.078 25 C -0.117 4.117 26 C -0.075 4.075 27 C 0.122 3.878 28 C -0.113 4.113 29 H 0.251 0.749 30 H 0.375 0.625 31 H 0.017 0.983 32 H 0.023 0.977 33 H 0.071 0.929 34 H 0.067 0.933 35 H 0.097 0.903 36 H 0.095 0.905 37 H 0.088 0.912 38 H 0.227 0.773 39 H 0.186 0.814 40 H 0.176 0.824 41 H 0.161 0.839 42 H 0.123 0.877 43 H 0.082 0.918 44 H 0.069 0.931 45 H 0.062 0.938 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.967 -19.035 16.051 24.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.266 4.266 3 Si 0.800 3.200 4 H -0.191 1.191 5 H -0.221 1.221 6 H -0.220 1.220 7 C -0.375 4.375 8 H 0.092 0.908 9 N -0.387 5.387 10 C 0.032 3.968 11 C -0.104 4.104 12 C -0.152 4.152 13 C -0.009 4.009 14 N -0.318 5.318 15 C 0.370 3.630 16 O -0.434 6.434 17 C -0.095 4.095 18 N -0.094 5.094 19 N -0.132 5.132 20 C -0.062 4.062 21 C -0.104 4.104 22 C -0.094 4.094 23 C -0.111 4.111 24 C -0.097 4.097 25 C -0.138 4.138 26 C -0.083 4.083 27 C -0.001 4.001 28 C -0.151 4.151 29 H 0.060 0.940 30 H 0.207 0.793 31 H 0.035 0.965 32 H 0.041 0.959 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.116 0.884 36 H 0.114 0.886 37 H 0.106 0.894 38 H 0.244 0.756 39 H 0.203 0.797 40 H 0.193 0.807 41 H 0.178 0.822 42 H 0.141 0.859 43 H 0.100 0.900 44 H 0.087 0.913 45 H 0.081 0.919 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.741 -19.694 14.693 24.633 hybrid contribution 0.971 1.315 0.548 1.725 sum -0.770 -18.379 15.241 23.888 Atomic orbital electron populations 1.69808 1.06532 1.25947 1.59625 1.25520 0.96365 1.00950 1.03794 0.85112 0.78258 0.79985 0.76649 1.19116 1.22125 1.22030 1.19657 0.91466 0.85448 1.40977 0.90816 1.42586 1.05669 1.01104 1.89314 1.20805 0.93713 0.84661 0.97604 1.21210 0.97168 0.94425 0.97553 1.21827 0.97386 0.91998 1.03970 1.21862 0.92464 1.00339 0.86274 1.48105 1.45833 1.12278 1.25582 1.17677 0.81215 0.83173 0.80886 1.90777 1.47463 1.32243 1.72892 1.22809 0.93995 0.98815 0.93924 1.72812 0.98924 1.09939 1.27695 1.72581 1.26994 1.13351 1.00313 1.25522 0.96052 0.89238 0.95392 1.19195 0.93734 1.01675 0.95819 1.21531 0.98247 0.96075 0.93567 1.21656 0.92374 0.95564 1.01554 1.21593 1.02597 0.94074 0.91433 1.21018 0.93302 1.00400 0.99039 1.18789 0.96572 1.00750 0.92142 1.21798 0.94347 0.82151 1.01791 1.21848 0.97760 0.97298 0.98204 0.94044 0.79273 0.96457 0.95904 0.91072 0.91382 0.88430 0.88630 0.89428 0.75645 0.79704 0.80666 0.82153 0.85916 0.89971 0.91292 0.91900 0.91645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.62 13.06 21.65 0.28 -58.34 16 2 C -0.07 -4.21 5.50 84.86 0.47 -3.74 16 3 Si 0.97 45.70 29.55 68.60 2.03 47.73 16 4 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 5 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 6 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 7 C -0.24 -13.46 9.99 84.03 0.84 -12.62 16 8 H 0.07 3.93 7.83 -2.91 -0.02 3.91 16 9 N -0.74 -36.94 5.32 -343.46 -1.83 -38.77 16 10 C 0.16 6.08 5.65 86.38 0.49 6.56 16 11 C -0.08 -2.55 2.19 -10.77 -0.02 -2.57 16 12 C -0.11 -2.68 5.36 30.67 0.16 -2.52 16 13 C 0.11 2.65 6.44 86.36 0.56 3.20 16 14 N -0.59 -16.02 2.97 -821.39 -2.44 -18.46 16 15 C 0.59 17.95 6.22 86.81 0.54 18.49 16 16 O -0.56 -19.49 16.52 -3.83 -0.06 -19.56 16 17 C 0.06 1.87 4.63 42.44 0.20 2.06 16 18 N -0.26 -8.05 11.35 -47.73 -0.54 -8.60 16 19 N -0.30 -8.03 11.41 -56.15 -0.64 -8.67 16 20 C 0.11 1.94 11.20 85.23 0.95 2.89 16 21 C -0.10 -1.69 5.75 -21.31 -0.12 -1.82 16 22 C -0.07 -0.66 9.84 22.29 0.22 -0.45 16 23 C -0.09 -0.74 9.95 22.08 0.22 -0.52 16 24 C -0.08 -0.99 9.95 22.11 0.22 -0.77 16 25 C -0.12 -2.40 9.45 22.22 0.21 -2.19 16 26 C -0.08 -1.80 5.77 -21.13 -0.12 -1.92 16 27 C 0.12 3.33 6.35 86.51 0.55 3.88 16 28 C -0.11 -3.40 5.26 30.82 0.16 -3.24 16 29 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 30 H 0.37 19.71 6.84 -92.71 -0.63 19.08 16 31 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 34 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 36 H 0.10 2.29 7.00 -2.38 -0.02 2.28 16 37 H 0.09 1.87 8.14 -2.38 -0.02 1.85 16 38 H 0.23 1.47 8.06 -2.91 -0.02 1.44 16 39 H 0.19 0.07 8.06 -2.91 -0.02 0.04 16 40 H 0.18 0.09 8.06 -2.91 -0.02 0.07 16 41 H 0.16 1.18 8.06 -2.91 -0.02 1.16 16 42 H 0.12 2.76 7.33 -2.92 -0.02 2.74 16 43 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 44 H 0.07 1.94 6.34 -2.39 -0.02 1.93 16 45 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 46 H 0.06 2.32 7.15 -2.39 -0.02 2.31 16 Total: -1.00 -77.80 379.16 2.69 -75.11 By element: Atomic # 1 Polarization: 24.43 SS G_CDS: 0.37 Total: 24.80 kcal Atomic # 6 Polarization: -0.77 SS G_CDS: 5.52 Total: 4.75 kcal Atomic # 7 Polarization: -127.67 SS G_CDS: -5.16 Total: -132.83 kcal Atomic # 8 Polarization: -19.49 SS G_CDS: -0.06 Total: -19.56 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.73 kcal Total: -77.80 2.69 -75.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205666466.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.477 kcal (2) G-P(sol) polarization free energy of solvation -77.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.111 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds