Wall clock time and date at job start Sat Apr 11 2020 06:04:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86801 * 120.00060 * 2 1 4 4 H 1.48494 * 109.47238 * 239.99947 * 3 2 1 5 5 H 1.48510 * 109.46736 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47431 * 119.99286 * 3 2 1 7 7 C 1.38812 * 120.00082 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99808 * 180.02562 * 7 2 1 9 9 N 1.36938 * 120.00024 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99816 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46765 * 179.97438 * 10 9 7 12 12 C 1.53043 * 109.45851 * 184.99711 * 11 10 9 13 13 C 1.53193 * 109.31395 * 178.61102 * 12 11 10 14 14 N 1.46928 * 108.77476 * 54.64005 * 13 12 11 15 15 C 1.34769 * 120.63365 * 126.36550 * 14 13 12 16 16 O 1.21594 * 119.99998 * 185.80322 * 15 14 13 17 17 C 1.47505 * 119.99829 * 5.80639 * 15 14 13 18 18 C 1.38670 * 120.34238 * 53.84466 * 17 15 14 19 19 C 1.38989 * 120.63491 * 179.97438 * 18 17 15 20 20 C 1.36225 * 121.14295 * 0.02562 * 19 18 17 21 21 C 1.40697 * 120.16568 * 0.04168 * 20 19 18 22 22 N 1.33766 * 120.97431 * 179.97438 * 21 20 19 23 23 C 1.31329 * 119.72820 * 180.02562 * 22 21 20 24 24 C 1.39654 * 120.68475 * 0.02562 * 23 22 21 25 25 N 1.31447 * 120.64269 * 0.26117 * 24 23 22 26 26 C 1.33496 * 119.71913 * 359.44137 * 25 24 23 27 27 C 1.46927 * 118.73416 * 306.64465 * 14 13 12 28 28 C 1.52765 * 109.01207 * 53.30738 * 27 14 13 29 29 H 0.96999 * 120.00469 * 0.02562 * 1 2 3 30 30 H 0.96995 * 119.99642 * 359.97438 * 9 7 2 31 31 H 1.08994 * 109.47306 * 60.00272 * 10 9 7 32 32 H 1.09001 * 109.47209 * 299.99944 * 10 9 7 33 33 H 1.08998 * 109.45029 * 304.95986 * 11 10 9 34 34 H 1.09005 * 109.49818 * 58.66555 * 12 11 10 35 35 H 1.08996 * 109.50433 * 298.57109 * 12 11 10 36 36 H 1.08996 * 109.58758 * 294.85438 * 13 12 11 37 37 H 1.08996 * 109.70564 * 174.49108 * 13 12 11 38 38 H 1.07998 * 119.68630 * 0.02562 * 18 17 15 39 39 H 1.07993 * 119.43472 * 180.02562 * 19 18 17 40 40 H 1.07999 * 119.91779 * 180.02562 * 20 19 18 41 41 H 1.08004 * 119.65862 * 180.02562 * 23 22 21 42 42 H 1.07993 * 119.67805 * 179.97438 * 24 23 22 43 43 H 1.08999 * 109.58509 * 173.14499 * 27 14 13 44 44 H 1.09004 * 109.58731 * 293.56680 * 27 14 13 45 45 H 1.08997 * 109.56119 * 185.55094 * 28 27 14 46 46 H 1.08995 * 109.35557 * 65.50072 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2124 5 1 1.2851 2.7465 -0.0006 6 1 3.1038 1.6965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.0639 -4.8197 0.0012 12 6 1.8252 -6.1413 0.1269 13 6 0.8249 -7.3010 0.1621 14 7 -0.0417 -7.2141 -1.0212 15 6 -0.1831 -8.2691 -1.8478 16 8 -0.8174 -8.1531 -2.8787 17 6 0.4315 -9.5646 -1.5018 18 6 0.1729 -10.1573 -0.2751 19 6 0.7483 -11.3781 0.0570 20 6 1.5790 -12.0240 -0.8082 21 6 1.8706 -11.4590 -2.0633 22 7 2.6844 -12.0789 -2.9251 23 6 2.9401 -11.5291 -4.0900 24 6 2.3715 -10.3023 -4.4392 25 7 1.5734 -9.6724 -3.6061 26 6 1.2944 -10.2152 -2.4188 27 6 -0.7463 -5.9530 -1.2897 28 6 0.2674 -4.8102 -1.3055 29 1 -0.4851 0.8400 -0.0004 30 1 0.3556 -2.3880 0.0005 31 1 2.6847 -3.7145 0.8905 32 1 2.6848 -3.7145 -0.8895 33 1 0.3807 -4.7126 0.8437 34 1 2.4107 -6.1379 1.0464 35 1 2.4907 -6.2607 -0.7281 36 1 0.2182 -7.2329 1.0650 37 1 1.3615 -8.2496 0.1530 38 1 -0.4826 -9.6660 0.4287 39 1 0.5333 -11.8224 1.0175 40 1 2.0150 -12.9721 -0.5299 41 1 3.5970 -12.0308 -4.7851 42 1 2.5933 -9.8647 -5.4013 43 1 -1.2441 -6.0115 -2.2576 44 1 -1.4837 -5.7728 -0.5075 45 1 -0.2561 -3.8594 -1.4057 46 1 0.9473 -4.9421 -2.1471 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206674360.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:05 Heat of formation + Delta-G solvation = 48.606863 kcal Electronic energy + Delta-G solvation = -28954.938951 eV Core-core repulsion = 25037.853020 eV Total energy + Delta-G solvation = -3917.085931 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.87944 -40.15982 -37.92843 -37.43026 -35.08056 -34.93758 -32.88530 -31.64887 -31.27921 -30.74412 -30.13117 -26.82549 -25.81101 -24.66714 -24.27620 -23.64486 -22.66426 -21.68705 -20.33553 -19.48268 -19.13232 -18.30211 -17.34487 -17.10736 -16.70082 -16.00294 -15.54209 -15.43187 -15.10141 -14.76835 -14.54462 -14.46260 -14.25713 -13.95607 -13.67110 -13.58554 -13.13536 -12.91912 -12.60402 -12.49033 -12.36085 -12.19430 -12.14469 -11.95815 -11.94741 -11.78158 -11.16115 -10.97663 -10.80888 -10.47907 -10.34671 -10.18644 -10.06624 -9.96930 -9.64246 -9.41729 -9.38352 -8.95880 -8.85171 -8.60571 -6.89973 -5.75126 -3.03310 -0.35220 0.12958 1.36525 2.25500 2.61043 2.95355 3.45042 3.49314 3.50382 3.59407 3.61216 3.73506 3.84667 4.23668 4.31057 4.50881 4.59501 4.63136 4.77516 4.81593 4.83176 4.99451 5.05333 5.19985 5.26731 5.34665 5.39238 5.47720 5.51724 5.57579 5.63205 5.71987 5.74108 5.81807 5.94166 6.01972 6.12186 6.14708 6.18116 6.31436 6.40582 6.53387 6.70899 6.81771 6.87775 6.93611 7.30876 7.37620 7.70934 8.09475 8.44234 9.55187 10.13540 10.48252 11.47834 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019978 B = 0.002303 C = 0.002250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.197778 B =12156.305808 C =12440.545018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.014 4.014 3 Si 0.907 3.093 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.239 4.239 8 H 0.069 0.931 9 N -0.731 5.731 10 C 0.159 3.841 11 C -0.093 4.093 12 C -0.126 4.126 13 C 0.105 3.895 14 N -0.602 5.602 15 C 0.566 3.434 16 O -0.518 6.518 17 C -0.085 4.085 18 C -0.066 4.066 19 C -0.103 4.103 20 C -0.066 4.066 21 C 0.074 3.926 22 N -0.425 5.425 23 C 0.077 3.923 24 C 0.081 3.919 25 N -0.408 5.408 26 C 0.109 3.891 27 C 0.113 3.887 28 C -0.124 4.124 29 H 0.255 0.745 30 H 0.384 0.616 31 H 0.018 0.982 32 H 0.017 0.983 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.065 0.935 36 H 0.072 0.928 37 H 0.080 0.920 38 H 0.144 0.856 39 H 0.144 0.856 40 H 0.144 0.856 41 H 0.177 0.823 42 H 0.177 0.823 43 H 0.091 0.909 44 H 0.069 0.931 45 H 0.089 0.911 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.936 -28.506 -1.366 28.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.210 4.210 3 Si 0.738 3.262 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.370 4.370 8 H 0.086 0.914 9 N -0.376 5.376 10 C 0.031 3.969 11 C -0.112 4.112 12 C -0.165 4.165 13 C -0.018 4.018 14 N -0.336 5.336 15 C 0.353 3.647 16 O -0.393 6.393 17 C -0.090 4.090 18 C -0.086 4.086 19 C -0.122 4.122 20 C -0.085 4.085 21 C -0.050 4.050 22 N -0.139 5.139 23 C -0.098 4.098 24 C -0.094 4.094 25 N -0.121 5.121 26 C -0.016 4.016 27 C -0.009 4.009 28 C -0.162 4.162 29 H 0.065 0.935 30 H 0.218 0.782 31 H 0.035 0.965 32 H 0.035 0.965 33 H 0.091 0.909 34 H 0.095 0.905 35 H 0.084 0.916 36 H 0.091 0.909 37 H 0.098 0.902 38 H 0.161 0.839 39 H 0.162 0.838 40 H 0.162 0.838 41 H 0.194 0.806 42 H 0.194 0.806 43 H 0.109 0.891 44 H 0.088 0.912 45 H 0.107 0.893 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.598 -28.276 -1.716 28.447 hybrid contribution 0.353 0.977 -0.078 1.041 sum 2.952 -27.299 -1.794 27.517 Atomic orbital electron populations 1.69638 1.05081 1.25752 1.57838 1.24727 0.95524 0.97649 1.03103 0.86270 0.78522 0.83592 0.77820 1.21309 1.21686 1.21315 1.19183 0.90982 0.84249 1.42614 0.91351 1.42362 1.05829 0.99948 1.89452 1.20655 0.93147 0.85433 0.97650 1.21304 0.97832 0.94186 0.97894 1.21906 0.97659 0.94264 1.02674 1.21895 0.92608 0.99752 0.87575 1.48066 1.46762 1.12683 1.26044 1.17864 0.80492 0.83154 0.83207 1.90803 1.41298 1.83626 1.23588 1.19827 0.98727 0.96488 0.93926 1.21536 0.97622 0.95190 0.94274 1.20943 0.96380 0.94569 1.00346 1.20968 0.96715 1.00110 0.90746 1.19513 0.96662 0.92920 0.95928 1.68708 1.10909 1.31741 1.02502 1.24114 0.97688 0.94044 0.93981 1.24220 0.92236 0.93022 0.99946 1.68784 1.10120 1.31955 1.01236 1.19239 0.96947 0.92803 0.92589 1.21660 0.94636 0.81877 1.02706 1.21841 0.98130 0.98301 0.97951 0.93474 0.78236 0.96452 0.96499 0.90901 0.90547 0.91637 0.90942 0.90204 0.83859 0.83799 0.83839 0.80561 0.80559 0.89063 0.91224 0.89280 0.91832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.30 13.06 55.49 0.72 -27.58 16 2 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 3 Si 0.91 22.58 29.55 -169.99 -5.02 17.55 16 4 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 5 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 6 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 7 C -0.24 -6.74 9.99 -15.06 -0.15 -6.89 16 8 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 9 N -0.73 -18.45 5.32 -59.91 -0.32 -18.77 16 10 C 0.16 3.18 5.65 -4.04 -0.02 3.15 16 11 C -0.09 -1.46 2.19 -90.58 -0.20 -1.66 16 12 C -0.13 -1.57 5.36 -26.61 -0.14 -1.71 16 13 C 0.10 1.10 5.57 -3.71 -0.02 1.08 16 14 N -0.60 -7.90 2.98 -174.27 -0.52 -8.42 16 15 C 0.57 8.30 6.83 -12.49 -0.09 8.22 16 16 O -0.52 -9.52 16.19 5.28 0.09 -9.43 16 17 C -0.08 -1.02 4.64 -104.63 -0.49 -1.51 16 18 C -0.07 -0.54 7.74 -39.14 -0.30 -0.84 16 19 C -0.10 -0.64 9.93 -40.03 -0.40 -1.03 16 20 C -0.07 -0.51 9.97 -39.38 -0.39 -0.90 16 21 C 0.07 0.79 6.59 -84.81 -0.56 0.23 16 22 N -0.42 -4.24 10.46 -10.82 -0.11 -4.36 16 23 C 0.08 0.59 11.21 -17.24 -0.19 0.40 16 24 C 0.08 0.74 11.22 -17.19 -0.19 0.54 16 25 N -0.41 -5.45 9.68 -10.59 -0.10 -5.55 16 26 C 0.11 1.38 6.59 -84.52 -0.56 0.83 16 27 C 0.11 1.59 6.41 -3.93 -0.03 1.57 16 28 C -0.12 -1.99 5.23 -26.83 -0.14 -2.13 16 29 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 30 H 0.38 10.06 6.84 -40.82 -0.28 9.78 16 31 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 33 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.08 0.73 5.38 -51.93 -0.28 0.45 16 38 H 0.14 0.88 7.73 -52.49 -0.41 0.47 16 39 H 0.14 0.41 8.06 -52.49 -0.42 -0.01 16 40 H 0.14 0.80 8.06 -52.49 -0.42 0.37 16 41 H 0.18 0.61 8.06 -52.48 -0.42 0.18 16 42 H 0.18 0.99 8.06 -52.49 -0.42 0.57 16 43 H 0.09 1.40 6.99 -51.93 -0.36 1.04 16 44 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 45 H 0.09 1.62 7.15 -51.93 -0.37 1.25 16 46 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 376.77 15.07 5.68 5.68 Total: -1.00 -36.71 376.77 -9.87 -46.58 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: -6.32 Total: 5.45 kcal Atomic # 6 Polarization: 2.81 SS G_CDS: -3.96 Total: -1.15 kcal Atomic # 7 Polarization: -64.35 SS G_CDS: -0.33 Total: -64.67 kcal Atomic # 8 Polarization: -9.52 SS G_CDS: 0.09 Total: -9.43 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.02 Total: 17.55 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -36.71 -9.87 -46.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206674360.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.187 kcal (2) G-P(sol) polarization free energy of solvation -36.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.580 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds