Wall clock time and date at job start Sat Apr 11 2020 06:04:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86801 * 120.00060 * 2 1 4 4 H 1.48494 * 109.47238 * 239.99947 * 3 2 1 5 5 H 1.48510 * 109.46736 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47431 * 119.99286 * 3 2 1 7 7 C 1.38812 * 120.00082 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99808 * 180.02562 * 7 2 1 9 9 N 1.36938 * 120.00024 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99816 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46765 * 179.97438 * 10 9 7 12 12 C 1.53043 * 109.45851 * 184.99711 * 11 10 9 13 13 C 1.53193 * 109.31395 * 178.61102 * 12 11 10 14 14 N 1.46928 * 108.77476 * 54.64005 * 13 12 11 15 15 C 1.34769 * 120.63365 * 126.36550 * 14 13 12 16 16 O 1.21594 * 119.99998 * 185.80322 * 15 14 13 17 17 C 1.47505 * 119.99829 * 5.80639 * 15 14 13 18 18 C 1.38670 * 120.34238 * 53.84466 * 17 15 14 19 19 C 1.38989 * 120.63491 * 179.97438 * 18 17 15 20 20 C 1.36225 * 121.14295 * 0.02562 * 19 18 17 21 21 C 1.40697 * 120.16568 * 0.04168 * 20 19 18 22 22 N 1.33766 * 120.97431 * 179.97438 * 21 20 19 23 23 C 1.31329 * 119.72820 * 180.02562 * 22 21 20 24 24 C 1.39654 * 120.68475 * 0.02562 * 23 22 21 25 25 N 1.31447 * 120.64269 * 0.26117 * 24 23 22 26 26 C 1.33496 * 119.71913 * 359.44137 * 25 24 23 27 27 C 1.46927 * 118.73416 * 306.64465 * 14 13 12 28 28 C 1.52765 * 109.01207 * 53.30738 * 27 14 13 29 29 H 0.96999 * 120.00469 * 0.02562 * 1 2 3 30 30 H 0.96995 * 119.99642 * 359.97438 * 9 7 2 31 31 H 1.08994 * 109.47306 * 60.00272 * 10 9 7 32 32 H 1.09001 * 109.47209 * 299.99944 * 10 9 7 33 33 H 1.08998 * 109.45029 * 304.95986 * 11 10 9 34 34 H 1.09005 * 109.49818 * 58.66555 * 12 11 10 35 35 H 1.08996 * 109.50433 * 298.57109 * 12 11 10 36 36 H 1.08996 * 109.58758 * 294.85438 * 13 12 11 37 37 H 1.08996 * 109.70564 * 174.49108 * 13 12 11 38 38 H 1.07998 * 119.68630 * 0.02562 * 18 17 15 39 39 H 1.07993 * 119.43472 * 180.02562 * 19 18 17 40 40 H 1.07999 * 119.91779 * 180.02562 * 20 19 18 41 41 H 1.08004 * 119.65862 * 180.02562 * 23 22 21 42 42 H 1.07993 * 119.67805 * 179.97438 * 24 23 22 43 43 H 1.08999 * 109.58509 * 173.14499 * 27 14 13 44 44 H 1.09004 * 109.58731 * 293.56680 * 27 14 13 45 45 H 1.08997 * 109.56119 * 185.55094 * 28 27 14 46 46 H 1.08995 * 109.35557 * 65.50072 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2124 5 1 1.2851 2.7465 -0.0006 6 1 3.1038 1.6965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.0639 -4.8197 0.0012 12 6 1.8252 -6.1413 0.1269 13 6 0.8249 -7.3010 0.1621 14 7 -0.0417 -7.2141 -1.0212 15 6 -0.1831 -8.2691 -1.8478 16 8 -0.8174 -8.1531 -2.8787 17 6 0.4315 -9.5646 -1.5018 18 6 0.1729 -10.1573 -0.2751 19 6 0.7483 -11.3781 0.0570 20 6 1.5790 -12.0240 -0.8082 21 6 1.8706 -11.4590 -2.0633 22 7 2.6844 -12.0789 -2.9251 23 6 2.9401 -11.5291 -4.0900 24 6 2.3715 -10.3023 -4.4392 25 7 1.5734 -9.6724 -3.6061 26 6 1.2944 -10.2152 -2.4188 27 6 -0.7463 -5.9530 -1.2897 28 6 0.2674 -4.8102 -1.3055 29 1 -0.4851 0.8400 -0.0004 30 1 0.3556 -2.3880 0.0005 31 1 2.6847 -3.7145 0.8905 32 1 2.6848 -3.7145 -0.8895 33 1 0.3807 -4.7126 0.8437 34 1 2.4107 -6.1379 1.0464 35 1 2.4907 -6.2607 -0.7281 36 1 0.2182 -7.2329 1.0650 37 1 1.3615 -8.2496 0.1530 38 1 -0.4826 -9.6660 0.4287 39 1 0.5333 -11.8224 1.0175 40 1 2.0150 -12.9721 -0.5299 41 1 3.5970 -12.0308 -4.7851 42 1 2.5933 -9.8647 -5.4013 43 1 -1.2441 -6.0115 -2.2576 44 1 -1.4837 -5.7728 -0.5075 45 1 -0.2561 -3.8594 -1.4057 46 1 0.9473 -4.9421 -2.1471 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206674360.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:04 Heat of formation + Delta-G solvation = 22.966426 kcal Electronic energy + Delta-G solvation = -28956.050803 eV Core-core repulsion = 25037.853020 eV Total energy + Delta-G solvation = -3918.197783 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.58055 -41.18653 -39.01528 -38.26119 -36.58417 -35.80180 -34.51699 -32.69936 -32.25368 -31.90025 -31.30849 -28.30737 -26.54431 -25.73261 -25.34296 -24.86695 -23.83448 -23.06109 -21.53132 -20.37735 -19.91174 -19.26899 -18.96149 -18.01795 -17.77534 -16.94594 -16.71236 -16.34202 -16.04780 -15.94351 -15.66327 -15.45684 -15.37633 -15.25346 -15.08939 -14.75060 -14.38777 -14.20508 -13.89604 -13.64613 -13.22678 -13.15765 -12.95871 -12.89471 -12.82971 -12.74713 -12.72599 -12.68386 -12.26285 -12.19102 -11.98888 -11.71361 -11.48923 -11.42736 -11.09406 -10.92050 -10.11803 -10.03628 -9.77181 -9.59307 -8.99592 -7.95663 -5.24032 -1.00433 -0.50156 0.63337 1.45973 1.49096 1.51511 1.55233 1.73492 1.99962 2.55421 2.92636 3.02687 3.11481 3.13495 3.37444 3.47694 3.70320 3.76184 3.82538 3.84245 3.93452 4.04395 4.10441 4.25287 4.27477 4.30063 4.33498 4.40773 4.52851 4.60588 4.68735 4.73834 4.80435 4.84775 4.94221 4.97123 4.99623 5.05189 5.12763 5.14567 5.19138 5.26204 5.45567 5.50903 5.53619 5.60761 6.20793 6.26874 6.31884 6.68707 7.04204 7.33339 8.09937 8.33685 9.27640 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019978 B = 0.002303 C = 0.002250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.197778 B =12156.305808 C =12440.545018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.075 4.075 3 Si 0.973 3.027 4 H -0.281 1.281 5 H -0.294 1.294 6 H -0.276 1.276 7 C -0.248 4.248 8 H 0.072 0.928 9 N -0.743 5.743 10 C 0.157 3.843 11 C -0.082 4.082 12 C -0.119 4.119 13 C 0.106 3.894 14 N -0.600 5.600 15 C 0.565 3.435 16 O -0.571 6.571 17 C -0.123 4.123 18 C -0.046 4.046 19 C -0.090 4.090 20 C -0.063 4.063 21 C 0.055 3.945 22 N -0.439 5.439 23 C 0.083 3.917 24 C 0.078 3.922 25 N -0.464 5.464 26 C 0.084 3.916 27 C 0.120 3.880 28 C -0.115 4.115 29 H 0.252 0.748 30 H 0.375 0.625 31 H 0.026 0.974 32 H 0.006 0.994 33 H 0.079 0.921 34 H 0.100 0.900 35 H 0.050 0.950 36 H 0.103 0.897 37 H 0.100 0.900 38 H 0.168 0.832 39 H 0.189 0.811 40 H 0.168 0.832 41 H 0.219 0.781 42 H 0.202 0.798 43 H 0.071 0.929 44 H 0.089 0.911 45 H 0.061 0.939 46 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.297 -31.011 0.775 31.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.267 4.267 3 Si 0.802 3.198 4 H -0.207 1.207 5 H -0.220 1.220 6 H -0.202 1.202 7 C -0.380 4.380 8 H 0.090 0.910 9 N -0.386 5.386 10 C 0.031 3.969 11 C -0.100 4.100 12 C -0.158 4.158 13 C -0.015 4.015 14 N -0.332 5.332 15 C 0.354 3.646 16 O -0.450 6.450 17 C -0.128 4.128 18 C -0.066 4.066 19 C -0.109 4.109 20 C -0.082 4.082 21 C -0.069 4.069 22 N -0.153 5.153 23 C -0.092 4.092 24 C -0.097 4.097 25 N -0.178 5.178 26 C -0.041 4.041 27 C -0.002 4.002 28 C -0.153 4.153 29 H 0.060 0.940 30 H 0.208 0.792 31 H 0.044 0.956 32 H 0.024 0.976 33 H 0.098 0.902 34 H 0.119 0.881 35 H 0.069 0.931 36 H 0.121 0.879 37 H 0.118 0.882 38 H 0.185 0.815 39 H 0.207 0.793 40 H 0.185 0.815 41 H 0.236 0.764 42 H 0.219 0.781 43 H 0.090 0.910 44 H 0.107 0.893 45 H 0.080 0.920 46 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 4.005 -30.816 0.468 31.078 hybrid contribution 0.008 1.670 -0.797 1.850 sum 4.013 -29.146 -0.330 29.423 Atomic orbital electron populations 1.69796 1.06533 1.26175 1.59390 1.25554 0.96423 1.01048 1.03670 0.85223 0.77239 0.79215 0.78158 1.20702 1.22028 1.20169 1.19588 0.91424 0.85550 1.41413 0.90973 1.42564 1.05678 1.01065 1.89315 1.20819 0.93877 0.85026 0.97187 1.21195 0.97064 0.94321 0.97456 1.21859 0.97767 0.92872 1.03265 1.22107 0.92312 0.99693 0.87394 1.48136 1.46684 1.11760 1.26669 1.18371 0.79571 0.84316 0.82345 1.90756 1.43668 1.84720 1.25840 1.19732 1.01052 0.95937 0.96084 1.21913 0.96450 0.95461 0.92773 1.21394 0.94633 0.93270 1.01579 1.21376 0.96434 1.00822 0.89608 1.19873 0.97089 0.92584 0.97336 1.68786 1.11254 1.31987 1.03286 1.24741 0.97186 0.93372 0.93914 1.24782 0.91083 0.93522 1.00317 1.68735 1.12305 1.34080 1.02683 1.19493 0.97971 0.93924 0.92705 1.21462 0.94326 0.81916 1.02501 1.21682 0.98053 0.97870 0.97742 0.93955 0.79199 0.95624 0.97565 0.90245 0.88134 0.93087 0.87897 0.88177 0.81485 0.79342 0.81501 0.76421 0.78104 0.91029 0.89297 0.92037 0.93879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.78 13.06 21.65 0.28 -59.50 16 2 C -0.07 -4.35 5.50 84.86 0.47 -3.88 16 3 Si 0.97 46.70 29.55 68.60 2.03 48.73 16 4 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 5 H -0.29 -14.16 7.11 99.48 0.71 -13.45 16 6 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 7 C -0.25 -14.11 9.99 84.03 0.84 -13.27 16 8 H 0.07 3.96 7.83 -2.91 -0.02 3.94 16 9 N -0.74 -38.18 5.32 -343.46 -1.83 -40.00 16 10 C 0.16 6.32 5.65 86.38 0.49 6.81 16 11 C -0.08 -2.51 2.19 -10.77 -0.02 -2.54 16 12 C -0.12 -2.75 5.36 30.67 0.16 -2.58 16 13 C 0.11 1.97 5.57 86.36 0.48 2.45 16 14 N -0.60 -15.54 2.98 -823.53 -2.45 -18.00 16 15 C 0.57 16.96 6.83 86.69 0.59 17.55 16 16 O -0.57 -22.37 16.19 -4.01 -0.06 -22.43 16 17 C -0.12 -2.90 4.64 -19.87 -0.09 -2.99 16 18 C -0.05 -0.61 7.74 22.55 0.17 -0.43 16 19 C -0.09 -0.73 9.93 21.98 0.22 -0.51 16 20 C -0.06 -0.78 9.97 22.40 0.22 -0.55 16 21 C 0.05 1.10 6.59 40.28 0.27 1.36 16 22 N -0.44 -8.16 10.46 -188.14 -1.97 -10.12 16 23 C 0.08 1.17 11.21 85.11 0.95 2.12 16 24 C 0.08 1.43 11.22 85.09 0.95 2.38 16 25 N -0.46 -12.94 9.68 -187.41 -1.81 -14.75 16 26 C 0.08 2.12 6.59 40.59 0.27 2.39 16 27 C 0.12 3.50 6.41 86.22 0.55 4.05 16 28 C -0.11 -3.86 5.23 30.53 0.16 -3.70 16 29 H 0.25 15.07 8.31 -92.71 -0.77 14.30 16 30 H 0.38 20.28 6.84 -92.71 -0.63 19.65 16 31 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 33 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 34 H 0.10 1.89 8.14 -2.38 -0.02 1.87 16 35 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.10 1.52 5.38 -2.39 -0.01 1.51 16 38 H 0.17 1.34 7.73 -2.91 -0.02 1.32 16 39 H 0.19 -0.12 8.06 -2.91 -0.02 -0.14 16 40 H 0.17 1.20 8.06 -2.91 -0.02 1.18 16 41 H 0.22 0.91 8.06 -2.91 -0.02 0.89 16 42 H 0.20 2.22 8.06 -2.91 -0.02 2.19 16 43 H 0.07 2.38 6.99 -2.39 -0.02 2.36 16 44 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 45 H 0.06 2.39 7.15 -2.39 -0.02 2.37 16 46 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 Total: -1.00 -84.94 376.77 1.25 -83.70 By element: Atomic # 1 Polarization: 23.34 SS G_CDS: 0.37 Total: 23.71 kcal Atomic # 6 Polarization: 1.97 SS G_CDS: 6.69 Total: 8.66 kcal Atomic # 7 Polarization: -134.59 SS G_CDS: -7.78 Total: -142.37 kcal Atomic # 8 Polarization: -22.37 SS G_CDS: -0.06 Total: -22.43 kcal Atomic # 14 Polarization: 46.70 SS G_CDS: 2.03 Total: 48.73 kcal Total: -84.94 1.25 -83.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206674360.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.663 kcal (2) G-P(sol) polarization free energy of solvation -84.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.697 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds