Wall clock time and date at job start Sat Apr 11 2020 06:04:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86796 * 120.00112 * 2 1 4 4 H 1.48502 * 109.47096 * 270.00022 * 3 2 1 5 5 H 1.48502 * 109.47293 * 29.99849 * 3 2 1 6 6 H 1.48496 * 109.47454 * 149.99837 * 3 2 1 7 7 C 1.38815 * 120.00475 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00656 * 179.97438 * 7 2 1 9 9 N 1.36942 * 119.99782 * 0.02562 * 7 2 1 10 10 C 1.46497 * 120.00409 * 180.02562 * 9 7 2 11 11 H 1.08999 * 109.46974 * 34.99514 * 10 9 7 12 12 C 1.52992 * 109.47350 * 154.99585 * 10 9 7 13 13 N 1.46499 * 109.47267 * 304.99849 * 12 10 9 14 14 C 1.34784 * 119.99971 * 180.02562 * 13 12 10 15 15 O 1.21619 * 119.99987 * 359.72699 * 14 13 12 16 16 C 1.47288 * 119.99804 * 179.97438 * 14 13 12 17 17 C 1.37964 * 126.80982 * 359.69105 * 16 14 13 18 18 N 1.34155 * 107.88512 * 179.83468 * 17 16 14 19 19 H 0.97005 * 125.15738 * 180.16461 * 18 17 16 20 20 N 1.39769 * 109.67631 * 0.43762 * 18 17 16 21 21 C 1.31366 * 109.07729 * 359.72786 * 20 18 17 22 22 C 1.48290 * 126.51050 * 180.02562 * 21 20 18 23 23 C 1.39378 * 120.12644 * 144.70102 * 22 21 20 24 24 C 1.38019 * 119.86953 * 179.69538 * 23 22 21 25 25 C 1.38322 * 120.12224 * 0.59542 * 24 23 22 26 26 C 1.38322 * 120.25982 * 359.67828 * 25 24 23 27 27 C 1.38011 * 120.12395 * 0.02562 * 26 25 24 28 28 C 1.53001 * 109.46890 * 274.99615 * 10 9 7 29 29 C 1.53005 * 117.49895 * 128.74209 * 28 10 9 30 30 C 1.53005 * 117.49656 * 60.08488 * 28 10 9 31 31 H 0.96998 * 119.99729 * 359.97438 * 1 2 3 32 32 H 0.97005 * 119.99365 * 359.97438 * 9 7 2 33 33 H 1.09004 * 109.47330 * 184.99753 * 12 10 9 34 34 H 1.09005 * 109.47124 * 64.99957 * 12 10 9 35 35 H 0.96999 * 119.99984 * 359.97438 * 13 12 10 36 36 H 1.07997 * 126.05346 * 359.97438 * 17 16 14 37 37 H 1.07994 * 120.06278 * 359.97324 * 23 22 21 38 38 H 1.08000 * 119.93298 * 180.29696 * 24 23 22 39 39 H 1.08003 * 119.86836 * 179.69655 * 25 24 23 40 40 H 1.08001 * 119.93962 * 180.02562 * 26 25 24 41 41 H 1.08003 * 120.06225 * 180.02562 * 27 26 25 42 42 H 1.09002 * 115.55084 * 274.41940 * 28 10 9 43 43 H 1.08996 * 117.49906 * 0.02562 * 29 28 10 44 44 H 1.09004 * 117.49491 * 145.02014 * 29 28 10 45 45 H 1.09000 * 117.49462 * 214.98020 * 30 28 10 46 46 H 1.08994 * 117.50121 * 359.97438 * 30 28 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0104 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3257 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0017 11 1 2.9684 -3.5503 0.5917 12 6 1.1806 -4.7518 0.6112 13 7 0.7330 -4.3346 1.9423 14 6 -0.0565 -5.1466 2.6730 15 8 -0.4015 -6.2235 2.2253 16 6 -0.5060 -4.7273 4.0115 17 6 -0.2009 -3.5446 4.6531 18 7 -0.8106 -3.5550 5.8480 19 1 -0.7657 -2.8420 6.5042 20 7 -1.5153 -4.7516 6.0065 21 6 -1.3610 -5.4866 4.9287 22 6 -1.9421 -6.8292 4.6857 23 6 -2.3514 -7.1927 3.4040 24 6 -2.8857 -8.4459 3.1826 25 6 -3.0266 -9.3358 4.2322 26 6 -2.6274 -8.9783 5.5074 27 6 -2.0862 -7.7301 5.7395 28 6 2.4230 -4.0363 -1.4349 29 6 3.8835 -4.3899 -1.7230 30 6 3.3044 -3.0631 -2.2205 31 1 -0.4849 0.8400 0.0004 32 1 0.3556 -2.3880 0.0005 33 1 1.7554 -5.6743 0.6937 34 1 0.3134 -4.9201 -0.0276 35 1 1.0055 -3.4743 2.2980 36 1 0.4173 -2.7503 4.2617 37 1 -2.2465 -6.4969 2.5848 38 1 -3.1987 -8.7305 2.1889 39 1 -3.4497 -10.3136 4.0553 40 1 -2.7394 -9.6773 6.3231 41 1 -1.7744 -7.4522 6.7355 42 1 1.6555 -4.5783 -1.9874 43 1 4.5843 -4.3526 -0.8890 44 1 4.0768 -5.1645 -2.4652 45 1 3.1170 -2.9653 -3.2898 46 1 3.6240 -2.1524 -1.7140 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265364275.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:50 Heat of formation + Delta-G solvation = 101.639283 kcal Electronic energy + Delta-G solvation = -28739.978022 eV Core-core repulsion = 24825.191750 eV Total energy + Delta-G solvation = -3914.786272 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.16337 -38.94333 -38.72589 -37.46419 -34.64663 -33.44381 -32.78030 -31.29114 -30.84233 -30.11452 -29.67887 -27.82185 -24.11464 -23.46045 -23.13292 -22.50176 -21.79935 -21.65008 -20.13001 -19.89190 -19.32095 -18.48407 -17.28043 -16.71538 -16.19880 -15.47961 -15.39504 -15.21438 -15.06284 -14.64979 -14.52250 -14.27212 -13.91601 -13.76263 -13.47484 -13.33687 -13.14077 -13.05755 -12.79968 -12.39609 -12.06820 -11.41090 -11.32444 -11.20760 -11.15901 -10.92325 -10.90748 -10.77992 -10.73039 -10.18103 -10.06889 -9.97623 -9.69112 -9.47806 -9.32424 -9.03668 -8.91977 -8.74968 -8.52168 -8.28931 -7.10307 -5.87643 -3.17142 1.05219 1.55776 1.57683 2.36130 2.63339 3.33685 3.39637 3.41789 3.61295 3.68674 3.97812 4.33255 4.38614 4.54822 4.61592 5.01047 5.04877 5.13076 5.21636 5.31421 5.37667 5.38806 5.47929 5.50629 5.57399 5.60301 5.73976 5.75569 5.88764 5.95436 6.01617 6.06596 6.15971 6.17887 6.23717 6.40445 6.52661 6.55344 6.58724 6.65979 6.70450 6.75602 6.92734 6.96573 7.03912 7.09451 7.43689 7.59428 8.00624 8.29248 8.65927 9.41578 9.96343 10.32663 11.33869 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012500 B = 0.003009 C = 0.002572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2239.486535 B = 9302.671737 C =10885.960090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.009 4.009 3 Si 0.901 3.099 4 H -0.290 1.290 5 H -0.293 1.293 6 H -0.282 1.282 7 C -0.237 4.237 8 H 0.070 0.930 9 N -0.717 5.717 10 C 0.193 3.807 11 H 0.054 0.946 12 C 0.122 3.878 13 N -0.710 5.710 14 C 0.588 3.412 15 O -0.547 6.547 16 C -0.278 4.278 17 C 0.115 3.885 18 N -0.465 5.465 19 H 0.443 0.557 20 N -0.289 5.289 21 C 0.171 3.829 22 C -0.028 4.028 23 C -0.048 4.048 24 C -0.131 4.131 25 C -0.109 4.109 26 C -0.138 4.138 27 C -0.089 4.089 28 C -0.158 4.158 29 C -0.196 4.196 30 C -0.156 4.156 31 H 0.255 0.745 32 H 0.386 0.614 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.406 0.594 36 H 0.193 0.807 37 H 0.147 0.853 38 H 0.123 0.877 39 H 0.119 0.881 40 H 0.120 0.880 41 H 0.121 0.879 42 H 0.091 0.909 43 H 0.086 0.914 44 H 0.081 0.919 45 H 0.079 0.921 46 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.025 -12.443 9.399 15.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.206 4.206 3 Si 0.732 3.268 4 H -0.217 1.217 5 H -0.219 1.219 6 H -0.208 1.208 7 C -0.368 4.368 8 H 0.088 0.912 9 N -0.358 5.358 10 C 0.082 3.918 11 H 0.072 0.928 12 C -0.003 4.003 13 N -0.360 5.360 14 C 0.376 3.624 15 O -0.427 6.427 16 C -0.293 4.293 17 C -0.035 4.035 18 N -0.170 5.170 19 H 0.288 0.712 20 N -0.110 5.110 21 C 0.003 3.997 22 C -0.030 4.030 23 C -0.067 4.067 24 C -0.149 4.149 25 C -0.128 4.128 26 C -0.157 4.157 27 C -0.109 4.109 28 C -0.180 4.180 29 C -0.234 4.234 30 C -0.194 4.194 31 H 0.065 0.935 32 H 0.220 0.780 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.242 0.758 36 H 0.210 0.790 37 H 0.164 0.836 38 H 0.141 0.859 39 H 0.137 0.863 40 H 0.138 0.862 41 H 0.139 0.861 42 H 0.109 0.891 43 H 0.104 0.896 44 H 0.099 0.901 45 H 0.098 0.902 46 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -1.669 -12.919 10.248 16.574 hybrid contribution 0.819 1.986 -0.498 2.205 sum -0.850 -10.933 9.750 14.674 Atomic orbital electron populations 1.69659 1.05002 1.25664 1.57254 1.24708 0.95410 0.97493 1.02948 0.86294 0.78651 0.84188 0.77641 1.21733 1.21902 1.20821 1.19157 0.90807 0.83850 1.42949 0.91171 1.42467 1.05844 0.99393 1.88080 1.20059 0.94331 0.86151 0.91233 0.92765 1.21571 0.98552 0.97442 0.82707 1.45797 1.50854 1.21498 1.17900 1.17115 0.78098 0.84039 0.83143 1.90708 1.57166 1.22532 1.72281 1.21340 1.12062 0.97062 0.98845 1.23207 0.95483 0.98374 0.86433 1.45926 1.39186 1.16595 1.15319 0.71212 1.77292 1.17874 0.93714 1.22072 1.21824 0.94343 0.93628 0.89953 1.17669 1.01444 0.89586 0.94349 1.21690 0.92177 0.96882 0.95967 1.21093 1.00764 0.94004 0.99048 1.21229 0.99156 0.99309 0.93076 1.20945 1.01137 0.96439 0.97130 1.21145 0.98246 0.93377 0.98116 1.23028 0.92156 1.03017 0.99816 1.22960 0.97310 0.99786 1.03341 1.22777 1.03461 0.94029 0.99098 0.93489 0.78006 0.91591 0.91716 0.75815 0.79048 0.83555 0.85892 0.86336 0.86163 0.86070 0.89108 0.89565 0.90095 0.90250 0.87769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -25.71 13.06 55.49 0.72 -24.99 16 2 C -0.01 -0.24 5.50 -17.43 -0.10 -0.33 16 3 Si 0.90 20.72 29.55 -169.99 -5.02 15.69 16 4 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 7 C -0.24 -5.72 8.63 -15.06 -0.13 -5.85 16 8 H 0.07 1.67 6.90 -52.49 -0.36 1.31 16 9 N -0.72 -15.48 4.54 -53.43 -0.24 -15.72 16 10 C 0.19 3.38 2.70 -67.94 -0.18 3.19 16 11 H 0.05 0.96 7.84 -51.93 -0.41 0.56 16 12 C 0.12 1.96 5.21 -4.05 -0.02 1.94 16 13 N -0.71 -11.14 5.38 -61.43 -0.33 -11.47 16 14 C 0.59 9.67 7.68 -12.58 -0.10 9.57 16 15 O -0.55 -10.00 12.45 5.26 0.07 -9.94 16 16 C -0.28 -4.14 6.26 -102.95 -0.64 -4.79 16 17 C 0.12 1.37 11.50 -16.64 -0.19 1.17 16 18 N -0.47 -5.09 7.20 30.81 0.22 -4.87 16 19 H 0.44 3.19 8.96 -182.84 -1.64 1.55 16 20 N -0.29 -4.04 12.63 34.57 0.44 -3.61 16 21 C 0.17 2.61 6.94 -80.56 -0.56 2.05 16 22 C -0.03 -0.42 5.73 -104.91 -0.60 -1.02 16 23 C -0.05 -0.72 7.77 -39.24 -0.30 -1.02 16 24 C -0.13 -1.66 10.03 -39.63 -0.40 -2.06 16 25 C -0.11 -1.21 10.04 -39.52 -0.40 -1.60 16 26 C -0.14 -1.54 10.03 -39.63 -0.40 -1.94 16 27 C -0.09 -1.15 9.76 -39.24 -0.38 -1.53 16 28 C -0.16 -2.65 5.36 -90.61 -0.49 -3.13 16 29 C -0.20 -2.87 10.18 -26.69 -0.27 -3.14 16 30 C -0.16 -2.68 9.78 -26.69 -0.26 -2.94 16 31 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 32 H 0.39 9.21 7.80 -40.82 -0.32 8.89 16 33 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.41 6.23 7.09 -40.82 -0.29 5.94 16 36 H 0.19 1.79 7.48 -52.49 -0.39 1.40 16 37 H 0.15 2.41 5.67 -52.49 -0.30 2.11 16 38 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 39 H 0.12 0.99 8.06 -52.48 -0.42 0.57 16 40 H 0.12 1.02 8.06 -52.49 -0.42 0.59 16 41 H 0.12 1.42 8.06 -52.48 -0.42 1.00 16 42 H 0.09 1.49 8.11 -51.93 -0.42 1.07 16 43 H 0.09 1.21 8.05 -51.93 -0.42 0.80 16 44 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 45 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 46 H 0.10 1.99 6.23 -51.93 -0.32 1.67 16 LS Contribution 386.49 15.07 5.82 5.82 Total: -1.00 -30.36 386.49 -11.13 -41.50 By element: Atomic # 1 Polarization: 26.39 SS G_CDS: -7.39 Total: 19.00 kcal Atomic # 6 Polarization: -6.01 SS G_CDS: -5.42 Total: -11.43 kcal Atomic # 7 Polarization: -61.46 SS G_CDS: 0.81 Total: -60.65 kcal Atomic # 8 Polarization: -10.00 SS G_CDS: 0.07 Total: -9.94 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -30.36 -11.13 -41.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265364275.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.135 kcal (2) G-P(sol) polarization free energy of solvation -30.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds