Wall clock time and date at job start Sat Apr 11 2020 06:04:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86796 * 120.00112 * 2 1 4 4 H 1.48502 * 109.47096 * 270.00022 * 3 2 1 5 5 H 1.48502 * 109.47293 * 29.99849 * 3 2 1 6 6 H 1.48496 * 109.47454 * 149.99837 * 3 2 1 7 7 C 1.38815 * 120.00475 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00656 * 179.97438 * 7 2 1 9 9 N 1.36942 * 119.99782 * 0.02562 * 7 2 1 10 10 C 1.46497 * 120.00409 * 180.02562 * 9 7 2 11 11 H 1.08999 * 109.46974 * 34.99514 * 10 9 7 12 12 C 1.52992 * 109.47350 * 154.99585 * 10 9 7 13 13 N 1.46499 * 109.47267 * 304.99849 * 12 10 9 14 14 C 1.34784 * 119.99971 * 180.02562 * 13 12 10 15 15 O 1.21619 * 119.99987 * 359.72699 * 14 13 12 16 16 C 1.47288 * 119.99804 * 179.97438 * 14 13 12 17 17 C 1.37964 * 126.80982 * 359.69105 * 16 14 13 18 18 N 1.34155 * 107.88512 * 179.83468 * 17 16 14 19 19 H 0.97005 * 125.15738 * 180.16461 * 18 17 16 20 20 N 1.39769 * 109.67631 * 0.43762 * 18 17 16 21 21 C 1.31366 * 109.07729 * 359.72786 * 20 18 17 22 22 C 1.48290 * 126.51050 * 180.02562 * 21 20 18 23 23 C 1.39378 * 120.12644 * 144.70102 * 22 21 20 24 24 C 1.38019 * 119.86953 * 179.69538 * 23 22 21 25 25 C 1.38322 * 120.12224 * 0.59542 * 24 23 22 26 26 C 1.38322 * 120.25982 * 359.67828 * 25 24 23 27 27 C 1.38011 * 120.12395 * 0.02562 * 26 25 24 28 28 C 1.53001 * 109.46890 * 274.99615 * 10 9 7 29 29 C 1.53005 * 117.49895 * 128.74209 * 28 10 9 30 30 C 1.53005 * 117.49656 * 60.08488 * 28 10 9 31 31 H 0.96998 * 119.99729 * 359.97438 * 1 2 3 32 32 H 0.97005 * 119.99365 * 359.97438 * 9 7 2 33 33 H 1.09004 * 109.47330 * 184.99753 * 12 10 9 34 34 H 1.09005 * 109.47124 * 64.99957 * 12 10 9 35 35 H 0.96999 * 119.99984 * 359.97438 * 13 12 10 36 36 H 1.07997 * 126.05346 * 359.97438 * 17 16 14 37 37 H 1.07994 * 120.06278 * 359.97324 * 23 22 21 38 38 H 1.08000 * 119.93298 * 180.29696 * 24 23 22 39 39 H 1.08003 * 119.86836 * 179.69655 * 25 24 23 40 40 H 1.08001 * 119.93962 * 180.02562 * 26 25 24 41 41 H 1.08003 * 120.06225 * 180.02562 * 27 26 25 42 42 H 1.09002 * 115.55084 * 274.41940 * 28 10 9 43 43 H 1.08996 * 117.49906 * 0.02562 * 29 28 10 44 44 H 1.09004 * 117.49491 * 145.02014 * 29 28 10 45 45 H 1.09000 * 117.49462 * 214.98020 * 30 28 10 46 46 H 1.08994 * 117.50121 * 359.97438 * 30 28 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0104 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3257 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0017 11 1 2.9684 -3.5503 0.5917 12 6 1.1806 -4.7518 0.6112 13 7 0.7330 -4.3346 1.9423 14 6 -0.0565 -5.1466 2.6730 15 8 -0.4015 -6.2235 2.2253 16 6 -0.5060 -4.7273 4.0115 17 6 -0.2009 -3.5446 4.6531 18 7 -0.8106 -3.5550 5.8480 19 1 -0.7657 -2.8420 6.5042 20 7 -1.5153 -4.7516 6.0065 21 6 -1.3610 -5.4866 4.9287 22 6 -1.9421 -6.8292 4.6857 23 6 -2.3514 -7.1927 3.4040 24 6 -2.8857 -8.4459 3.1826 25 6 -3.0266 -9.3358 4.2322 26 6 -2.6274 -8.9783 5.5074 27 6 -2.0862 -7.7301 5.7395 28 6 2.4230 -4.0363 -1.4349 29 6 3.8835 -4.3899 -1.7230 30 6 3.3044 -3.0631 -2.2205 31 1 -0.4849 0.8400 0.0004 32 1 0.3556 -2.3880 0.0005 33 1 1.7554 -5.6743 0.6937 34 1 0.3134 -4.9201 -0.0276 35 1 1.0055 -3.4743 2.2980 36 1 0.4173 -2.7503 4.2617 37 1 -2.2465 -6.4969 2.5848 38 1 -3.1987 -8.7305 2.1889 39 1 -3.4497 -10.3136 4.0553 40 1 -2.7394 -9.6773 6.3231 41 1 -1.7744 -7.4522 6.7355 42 1 1.6555 -4.5783 -1.9874 43 1 4.5843 -4.3526 -0.8890 44 1 4.0768 -5.1645 -2.4652 45 1 3.1170 -2.9653 -3.2898 46 1 3.6240 -2.1524 -1.7140 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265364275.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:49 Heat of formation + Delta-G solvation = 83.243346 kcal Electronic energy + Delta-G solvation = -28740.775730 eV Core-core repulsion = 24825.191750 eV Total energy + Delta-G solvation = -3915.583980 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.20641 -40.21557 -39.70043 -38.85378 -36.02874 -35.10299 -33.78994 -32.83237 -31.85715 -31.35896 -30.68542 -29.32013 -25.71533 -24.60135 -24.41068 -23.57880 -23.01917 -22.88820 -21.35181 -21.07434 -20.52256 -19.65545 -19.01070 -17.66629 -17.40897 -16.85852 -16.68477 -16.40651 -16.23607 -15.96461 -15.77102 -15.53561 -15.23753 -14.98305 -14.84657 -14.65010 -14.45513 -14.16175 -13.85023 -13.56198 -13.41345 -12.96260 -12.85038 -12.63822 -12.39125 -12.33430 -12.20153 -12.11685 -11.95356 -11.78120 -11.68781 -11.06088 -10.99418 -10.95977 -10.78264 -10.69040 -10.06532 -9.78414 -9.68570 -9.30572 -8.95286 -7.84735 -5.11812 0.04751 0.52242 0.60647 1.29257 1.50557 1.53781 1.59280 1.72830 2.36409 2.47955 2.60828 2.99507 3.11878 3.32116 3.52368 3.62327 3.85521 4.05009 4.09352 4.15003 4.21143 4.22886 4.33974 4.35286 4.41121 4.44281 4.44890 4.62619 4.66794 4.74598 4.78439 4.93344 4.94149 4.99894 5.19473 5.20117 5.22074 5.26045 5.43803 5.52149 5.60046 5.62020 5.66088 5.70649 5.72750 6.14320 6.19861 6.34613 6.41164 6.74981 7.39801 7.43508 8.14968 8.40873 9.37674 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012500 B = 0.003009 C = 0.002572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2239.486535 B = 9302.671737 C =10885.960090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.965 5.965 2 C -0.067 4.067 3 Si 0.955 3.045 4 H -0.299 1.299 5 H -0.303 1.303 6 H -0.268 1.268 7 C -0.213 4.213 8 H 0.077 0.923 9 N -0.722 5.722 10 C 0.199 3.801 11 H 0.059 0.941 12 C 0.132 3.868 13 N -0.707 5.707 14 C 0.586 3.414 15 O -0.570 6.570 16 C -0.311 4.311 17 C 0.136 3.864 18 N -0.447 5.447 19 H 0.461 0.539 20 N -0.302 5.302 21 C 0.157 3.843 22 C -0.052 4.052 23 C -0.071 4.071 24 C -0.140 4.140 25 C -0.105 4.105 26 C -0.133 4.133 27 C -0.098 4.098 28 C -0.172 4.172 29 C -0.163 4.163 30 C -0.174 4.174 31 H 0.246 0.754 32 H 0.373 0.627 33 H 0.078 0.922 34 H 0.051 0.949 35 H 0.408 0.592 36 H 0.219 0.781 37 H 0.122 0.878 38 H 0.135 0.865 39 H 0.152 0.848 40 H 0.153 0.847 41 H 0.129 0.871 42 H 0.092 0.908 43 H 0.096 0.904 44 H 0.104 0.896 45 H 0.084 0.916 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.198 -13.838 10.413 17.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.616 5.616 2 C -0.260 4.260 3 Si 0.787 3.213 4 H -0.227 1.227 5 H -0.230 1.230 6 H -0.193 1.193 7 C -0.345 4.345 8 H 0.095 0.905 9 N -0.361 5.361 10 C 0.090 3.910 11 H 0.077 0.923 12 C 0.007 3.993 13 N -0.357 5.357 14 C 0.375 3.625 15 O -0.452 6.452 16 C -0.326 4.326 17 C -0.016 4.016 18 N -0.154 5.154 19 H 0.309 0.691 20 N -0.123 5.123 21 C -0.011 4.011 22 C -0.054 4.054 23 C -0.090 4.090 24 C -0.158 4.158 25 C -0.123 4.123 26 C -0.151 4.151 27 C -0.118 4.118 28 C -0.194 4.194 29 C -0.200 4.200 30 C -0.212 4.212 31 H 0.055 0.945 32 H 0.205 0.795 33 H 0.096 0.904 34 H 0.069 0.931 35 H 0.244 0.756 36 H 0.235 0.765 37 H 0.139 0.861 38 H 0.153 0.847 39 H 0.170 0.830 40 H 0.171 0.829 41 H 0.147 0.853 42 H 0.111 0.889 43 H 0.115 0.885 44 H 0.123 0.877 45 H 0.102 0.898 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -0.399 -14.331 11.290 18.248 hybrid contribution 0.467 2.326 -0.799 2.503 sum 0.069 -12.005 10.491 15.943 Atomic orbital electron populations 1.69802 1.06291 1.25429 1.60088 1.25290 0.95954 1.00112 1.04631 0.85407 0.78016 0.81042 0.76867 1.22701 1.22975 1.19324 1.19432 0.91080 0.84518 1.39509 0.90542 1.42567 1.05313 1.00292 1.87959 1.20135 0.94097 0.84744 0.92063 0.92333 1.21429 0.97833 0.97327 0.82678 1.45724 1.50877 1.21495 1.17637 1.17354 0.77705 0.83725 0.83699 1.90697 1.57941 1.23588 1.72970 1.21335 1.13889 0.98687 0.98730 1.23517 0.94372 0.97689 0.86005 1.45962 1.37847 1.16217 1.15418 0.69096 1.77231 1.18568 0.94590 1.21941 1.22037 0.94617 0.94164 0.90297 1.17884 1.02423 0.90193 0.94919 1.21573 0.94187 0.97699 0.95570 1.21330 1.00546 0.93516 1.00431 1.21606 0.98058 1.00187 0.92430 1.21355 0.99478 0.96088 0.98187 1.21339 0.98572 0.93931 0.97924 1.22940 0.93861 1.03760 0.98832 1.23027 0.95280 0.98269 1.03469 1.22731 1.04883 0.94314 0.99226 0.94498 0.79468 0.90415 0.93098 0.75580 0.76467 0.86079 0.84695 0.83014 0.82921 0.85346 0.88944 0.88548 0.87723 0.89786 0.89999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -54.46 13.06 21.65 0.28 -54.18 16 2 C -0.07 -3.50 5.50 84.86 0.47 -3.03 16 3 Si 0.96 42.79 29.55 68.60 2.03 44.82 16 4 H -0.30 -13.69 7.11 99.48 0.71 -12.98 16 5 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 6 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 7 C -0.21 -10.23 8.63 84.03 0.73 -9.50 16 8 H 0.08 3.54 6.90 -2.91 -0.02 3.52 16 9 N -0.72 -31.12 4.54 -322.95 -1.47 -32.59 16 10 C 0.20 6.78 2.70 44.99 0.12 6.91 16 11 H 0.06 1.98 7.84 -2.39 -0.02 1.96 16 12 C 0.13 4.22 5.21 86.38 0.45 4.67 16 13 N -0.71 -22.25 5.38 -466.50 -2.51 -24.76 16 14 C 0.59 19.75 7.68 86.62 0.67 20.41 16 15 O -0.57 -21.70 12.45 -4.09 -0.05 -21.75 16 16 C -0.31 -9.40 6.26 -18.78 -0.12 -9.52 16 17 C 0.14 3.10 11.50 84.27 0.97 4.07 16 18 N -0.45 -9.28 7.20 -56.43 -0.41 -9.69 16 19 H 0.46 5.82 8.96 -213.53 -1.91 3.90 16 20 N -0.30 -8.37 12.63 -44.53 -0.56 -8.93 16 21 C 0.16 4.87 6.94 44.07 0.31 5.18 16 22 C -0.05 -1.59 5.73 -20.05 -0.11 -1.70 16 23 C -0.07 -2.21 7.77 22.49 0.17 -2.03 16 24 C -0.14 -3.53 10.03 22.24 0.22 -3.30 16 25 C -0.10 -2.10 10.04 22.31 0.22 -1.88 16 26 C -0.13 -2.68 10.03 22.24 0.22 -2.46 16 27 C -0.10 -2.47 9.76 22.49 0.22 -2.25 16 28 C -0.17 -5.53 5.36 -10.79 -0.06 -5.59 16 29 C -0.16 -4.30 10.18 30.62 0.31 -3.99 16 30 C -0.17 -5.73 9.78 30.62 0.30 -5.43 16 31 H 0.25 13.82 8.31 -92.71 -0.77 13.04 16 32 H 0.37 18.10 7.80 -92.70 -0.72 17.38 16 33 H 0.08 2.32 8.14 -2.38 -0.02 2.30 16 34 H 0.05 1.78 8.14 -2.38 -0.02 1.76 16 35 H 0.41 12.38 7.09 -92.71 -0.66 11.72 16 36 H 0.22 3.69 7.48 -2.91 -0.02 3.67 16 37 H 0.12 4.32 5.67 -2.91 -0.02 4.30 16 38 H 0.14 2.91 8.06 -2.91 -0.02 2.88 16 39 H 0.15 2.00 8.06 -2.91 -0.02 1.98 16 40 H 0.15 2.03 8.06 -2.91 -0.02 2.01 16 41 H 0.13 2.93 8.06 -2.91 -0.02 2.90 16 42 H 0.09 2.95 8.11 -2.39 -0.02 2.93 16 43 H 0.10 2.38 8.05 -2.39 -0.02 2.37 16 44 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 45 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 46 H 0.08 3.06 6.23 -2.39 -0.01 3.05 16 Total: -1.00 -66.81 386.49 0.16 -66.65 By element: Atomic # 1 Polarization: 52.12 SS G_CDS: -2.25 Total: 49.88 kcal Atomic # 6 Polarization: -14.53 SS G_CDS: 5.09 Total: -9.44 kcal Atomic # 7 Polarization: -125.49 SS G_CDS: -4.66 Total: -130.15 kcal Atomic # 8 Polarization: -21.70 SS G_CDS: -0.05 Total: -21.75 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.82 kcal Total: -66.81 0.16 -66.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265364275.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.891 kcal (2) G-P(sol) polarization free energy of solvation -66.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.647 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds