Wall clock time and date at job start Sat Apr 11 2020 06:04:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86802 * 119.99965 * 2 1 4 4 H 1.48501 * 109.47111 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46983 * 300.00456 * 3 2 1 6 6 H 1.48501 * 109.46818 * 60.00326 * 3 2 1 7 7 C 1.38814 * 120.00061 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99812 * 179.97438 * 7 2 1 9 9 N 1.36932 * 119.99955 * 0.02562 * 7 2 1 10 10 C 1.46507 * 120.00101 * 180.02562 * 9 7 2 11 11 H 1.09001 * 109.46497 * 324.99668 * 10 9 7 12 12 C 1.52993 * 109.47266 * 204.99971 * 10 9 7 13 13 N 1.46500 * 109.47695 * 54.99406 * 12 10 9 14 14 C 1.34771 * 120.00183 * 180.02562 * 13 12 10 15 15 O 1.21615 * 120.00012 * 0.02562 * 14 13 12 16 16 C 1.47291 * 119.99933 * 180.02562 * 14 13 12 17 17 C 1.37960 * 126.80736 * 5.77955 * 16 14 13 18 18 N 1.34165 * 107.88892 * 179.71418 * 17 16 14 19 19 H 0.96993 * 125.16154 * 180.30193 * 18 17 16 20 20 N 1.39763 * 109.67207 * 0.26358 * 18 17 16 21 21 C 1.31369 * 109.07941 * 0.02562 * 20 18 17 22 22 C 1.48294 * 126.51232 * 180.02562 * 21 20 18 23 23 C 1.39386 * 120.12335 * 43.17664 * 22 21 20 24 24 C 1.38003 * 119.87265 * 179.74861 * 23 22 21 25 25 C 1.38331 * 120.12457 * 0.54610 * 24 23 22 26 26 C 1.38326 * 120.25047 * 359.70581 * 25 24 23 27 27 C 1.38006 * 120.13001 * 0.02562 * 26 25 24 28 28 C 1.53001 * 109.47171 * 84.99284 * 10 9 7 29 29 C 1.53000 * 117.49792 * 8.75399 * 28 10 9 30 30 C 1.52996 * 117.50235 * 300.08953 * 28 10 9 31 31 H 0.96999 * 120.00479 * 359.97438 * 1 2 3 32 32 H 0.97002 * 120.00539 * 359.97438 * 9 7 2 33 33 H 1.09004 * 109.46766 * 294.99773 * 12 10 9 34 34 H 1.09005 * 109.47332 * 175.00182 * 12 10 9 35 35 H 0.97002 * 119.99366 * 0.02562 * 13 12 10 36 36 H 1.08003 * 126.05822 * 359.97438 * 17 16 14 37 37 H 1.08008 * 120.06341 * 0.02562 * 23 22 21 38 38 H 1.08001 * 119.94337 * 180.28945 * 24 23 22 39 39 H 1.08003 * 119.87673 * 179.72114 * 25 24 23 40 40 H 1.08003 * 119.93593 * 180.02562 * 26 25 24 41 41 H 1.07996 * 120.06844 * 180.02562 * 27 26 25 42 42 H 1.09001 * 115.54638 * 154.41936 * 28 10 9 43 43 H 1.08999 * 117.50289 * 359.97438 * 29 28 10 44 44 H 1.09001 * 117.49898 * 145.01977 * 29 28 10 45 45 H 1.08997 * 117.50488 * 214.97886 * 30 28 10 46 46 H 1.08998 * 117.49692 * 359.97438 * 30 28 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8914 2.3964 1.2126 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0016 10 6 2.0581 -3.6568 -0.0016 11 1 2.9692 -3.5502 -0.5904 12 6 1.1814 -4.7519 -0.6124 13 7 0.7357 -4.3347 -1.9441 14 6 -0.0536 -5.1462 -2.6754 15 8 -0.3961 -6.2246 -2.2297 16 6 -0.5013 -4.7269 -4.0146 17 6 -0.1120 -3.5942 -4.6992 18 7 -0.7452 -3.5896 -5.8820 19 1 -0.6498 -2.9066 -6.5640 20 7 -1.5624 -4.7189 -5.9826 21 6 -1.4513 -5.4288 -4.8828 22 6 -2.1485 -6.7021 -4.5802 23 6 -2.2514 -7.6923 -5.5558 24 6 -2.8969 -8.8774 -5.2670 25 6 -3.4511 -9.0790 -4.0157 26 6 -3.3566 -8.0978 -3.0454 27 6 -2.7086 -6.9109 -3.3211 28 6 2.4210 -4.0362 1.4355 29 6 1.8116 -3.1997 2.5623 30 6 3.2980 -3.0612 2.2236 31 1 -0.4851 0.8400 0.0004 32 1 0.3556 -2.3881 -0.0016 33 1 0.3134 -4.9201 0.0252 34 1 1.7564 -5.6743 -0.6940 35 1 1.0086 -3.4743 -2.2994 36 1 0.5828 -2.8460 -4.3473 37 1 -1.8228 -7.5342 -6.5346 38 1 -2.9731 -9.6473 -6.0206 39 1 -3.9592 -10.0062 -3.7955 40 1 -3.7908 -8.2608 -2.0700 41 1 -2.6351 -6.1457 -2.5627 42 1 2.5622 -5.1013 1.6191 43 1 1.1524 -2.3789 2.2799 44 1 1.5522 -3.7145 3.4875 45 1 4.0158 -3.4847 2.9261 46 1 3.6167 -2.1496 1.7182 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265364276.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:53 Heat of formation + Delta-G solvation = 83.174163 kcal Electronic energy + Delta-G solvation = -28852.801324 eV Core-core repulsion = 24937.214344 eV Total energy + Delta-G solvation = -3915.586980 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.19544 -40.20931 -39.72011 -38.96469 -35.81444 -35.01041 -33.80033 -32.74843 -31.86060 -31.37070 -30.70042 -29.41561 -25.69650 -24.75682 -24.42081 -23.62394 -23.13756 -22.79197 -21.21079 -20.95329 -20.38895 -19.56915 -19.01188 -17.66745 -17.43628 -16.84658 -16.63238 -16.29108 -16.27926 -16.23927 -15.74864 -15.44055 -15.27370 -15.09835 -14.68913 -14.51800 -14.36906 -14.23463 -13.96622 -13.58518 -13.45050 -12.90471 -12.84946 -12.61607 -12.52799 -12.29740 -12.12745 -12.07054 -11.89532 -11.86959 -11.55688 -11.06160 -11.01007 -10.95299 -10.74197 -10.57296 -10.07218 -9.79605 -9.70696 -9.36450 -8.95172 -7.84805 -5.11935 0.08897 0.53161 0.57953 1.22506 1.49280 1.53832 1.59766 1.73014 2.36420 2.51238 2.61011 2.95265 3.17577 3.31270 3.50437 3.64957 3.93798 4.03726 4.08306 4.15096 4.19861 4.29348 4.33666 4.35455 4.38201 4.41275 4.57117 4.61299 4.65160 4.74860 4.76038 4.95863 4.99950 5.01736 5.18577 5.20320 5.23259 5.31790 5.47075 5.59107 5.63135 5.66147 5.68226 5.70647 5.71811 6.11704 6.19380 6.34923 6.40641 6.76467 7.41219 7.43880 8.15067 8.40908 9.37406 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013071 B = 0.003014 C = 0.002615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2141.626586 B = 9286.647033 C =10705.276320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.963 5.963 2 C -0.065 4.065 3 Si 0.953 3.047 4 H -0.268 1.268 5 H -0.298 1.298 6 H -0.307 1.307 7 C -0.212 4.212 8 H 0.077 0.923 9 N -0.719 5.719 10 C 0.194 3.806 11 H 0.063 0.937 12 C 0.132 3.868 13 N -0.707 5.707 14 C 0.587 3.413 15 O -0.573 6.573 16 C -0.310 4.310 17 C 0.136 3.864 18 N -0.448 5.448 19 H 0.461 0.539 20 N -0.301 5.301 21 C 0.156 3.844 22 C -0.042 4.042 23 C -0.101 4.101 24 C -0.129 4.129 25 C -0.106 4.106 26 C -0.135 4.135 27 C -0.070 4.070 28 C -0.168 4.168 29 C -0.174 4.174 30 C -0.170 4.170 31 H 0.245 0.755 32 H 0.374 0.626 33 H 0.049 0.951 34 H 0.078 0.922 35 H 0.408 0.592 36 H 0.220 0.780 37 H 0.129 0.871 38 H 0.154 0.846 39 H 0.153 0.847 40 H 0.137 0.863 41 H 0.103 0.897 42 H 0.114 0.886 43 H 0.078 0.922 44 H 0.088 0.912 45 H 0.100 0.900 46 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.580 -13.653 -10.213 17.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.614 5.614 2 C -0.257 4.257 3 Si 0.785 3.215 4 H -0.193 1.193 5 H -0.226 1.226 6 H -0.235 1.235 7 C -0.344 4.344 8 H 0.095 0.905 9 N -0.359 5.359 10 C 0.085 3.915 11 H 0.080 0.920 12 C 0.008 3.992 13 N -0.358 5.358 14 C 0.375 3.625 15 O -0.454 6.454 16 C -0.325 4.325 17 C -0.016 4.016 18 N -0.155 5.155 19 H 0.309 0.691 20 N -0.122 5.122 21 C -0.013 4.013 22 C -0.045 4.045 23 C -0.120 4.120 24 C -0.146 4.146 25 C -0.125 4.125 26 C -0.153 4.153 27 C -0.090 4.090 28 C -0.189 4.189 29 C -0.212 4.212 30 C -0.207 4.207 31 H 0.054 0.946 32 H 0.207 0.793 33 H 0.068 0.932 34 H 0.096 0.904 35 H 0.244 0.756 36 H 0.237 0.763 37 H 0.147 0.853 38 H 0.172 0.828 39 H 0.171 0.829 40 H 0.155 0.845 41 H 0.121 0.879 42 H 0.132 0.868 43 H 0.096 0.904 44 H 0.107 0.893 45 H 0.118 0.882 46 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -1.179 -14.153 -11.072 18.008 hybrid contribution 0.572 2.345 0.706 2.515 sum -0.607 -11.808 -10.366 15.724 Atomic orbital electron populations 1.69802 1.06225 1.25294 1.60079 1.25247 0.95886 0.99967 1.04629 0.85371 0.78527 0.81578 0.76042 1.19268 1.22585 1.23524 1.19437 0.91072 0.84457 1.39449 0.90549 1.42546 1.05298 1.00232 1.87836 1.20120 0.93999 0.84821 0.92574 0.91953 1.21407 0.97950 0.97254 0.82598 1.45716 1.50967 1.21527 1.17604 1.17342 0.77729 0.83705 0.83725 1.90735 1.58331 1.23461 1.72916 1.21362 1.11135 1.01032 0.98990 1.23528 0.95191 0.96918 0.85993 1.45961 1.33515 1.20344 1.15666 0.69091 1.77248 1.15646 0.97874 1.21442 1.22023 0.94456 0.94411 0.90416 1.17845 1.00171 0.91115 0.95320 1.21319 0.98974 0.93444 0.98269 1.21373 0.98193 0.97102 0.97974 1.21594 0.98420 0.99486 0.92964 1.21306 0.99981 0.93353 1.00670 1.21091 0.95144 0.98163 0.94581 1.23066 1.04901 0.96711 0.94229 1.22769 0.96788 1.03131 0.98463 1.22837 0.93308 1.01206 1.03328 0.94553 0.79334 0.93216 0.90431 0.75571 0.76321 0.85345 0.82815 0.82889 0.84514 0.87865 0.86847 0.90392 0.89322 0.88213 0.90209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -53.91 13.06 21.65 0.28 -53.63 16 2 C -0.06 -3.32 5.50 84.86 0.47 -2.86 16 3 Si 0.95 42.74 29.55 68.60 2.03 44.76 16 4 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 5 H -0.30 -13.49 7.11 99.48 0.71 -12.78 16 6 H -0.31 -14.40 7.11 99.48 0.71 -13.70 16 7 C -0.21 -10.03 8.15 84.03 0.69 -9.34 16 8 H 0.08 3.52 6.91 -2.91 -0.02 3.50 16 9 N -0.72 -30.39 3.08 -322.94 -0.99 -31.38 16 10 C 0.19 6.56 2.86 44.99 0.13 6.69 16 11 H 0.06 2.09 8.08 -2.39 -0.02 2.07 16 12 C 0.13 4.22 5.21 86.38 0.45 4.67 16 13 N -0.71 -22.27 5.38 -466.52 -2.51 -24.77 16 14 C 0.59 19.92 7.65 86.63 0.66 20.58 16 15 O -0.57 -22.31 13.54 -4.08 -0.06 -22.36 16 16 C -0.31 -9.38 6.27 -18.78 -0.12 -9.50 16 17 C 0.14 3.06 11.50 84.27 0.97 4.03 16 18 N -0.45 -9.23 7.20 -56.42 -0.41 -9.64 16 19 H 0.46 5.73 8.96 -213.55 -1.91 3.82 16 20 N -0.30 -8.36 12.66 -44.53 -0.56 -8.92 16 21 C 0.16 4.83 6.87 44.07 0.30 5.14 16 22 C -0.04 -1.29 5.53 -20.05 -0.11 -1.41 16 23 C -0.10 -2.54 9.78 22.49 0.22 -2.32 16 24 C -0.13 -2.58 10.03 22.24 0.22 -2.36 16 25 C -0.11 -2.13 10.04 22.31 0.22 -1.90 16 26 C -0.14 -3.37 10.03 22.24 0.22 -3.15 16 27 C -0.07 -2.17 7.74 22.49 0.17 -2.00 16 28 C -0.17 -5.32 5.70 -10.79 -0.06 -5.38 16 29 C -0.17 -6.19 9.74 30.62 0.30 -5.89 16 30 C -0.17 -5.53 9.87 30.62 0.30 -5.23 16 31 H 0.25 13.70 8.31 -92.71 -0.77 12.93 16 32 H 0.37 17.94 7.80 -92.71 -0.72 17.21 16 33 H 0.05 1.75 8.14 -2.38 -0.02 1.73 16 34 H 0.08 2.28 8.14 -2.38 -0.02 2.26 16 35 H 0.41 12.33 7.12 -92.71 -0.66 11.67 16 36 H 0.22 3.55 7.51 -2.91 -0.02 3.53 16 37 H 0.13 2.92 8.06 -2.91 -0.02 2.89 16 38 H 0.15 2.02 8.06 -2.91 -0.02 2.00 16 39 H 0.15 1.99 8.06 -2.91 -0.02 1.97 16 40 H 0.14 2.88 8.06 -2.91 -0.02 2.86 16 41 H 0.10 3.62 6.94 -2.91 -0.02 3.60 16 42 H 0.11 3.05 8.11 -2.39 -0.02 3.03 16 43 H 0.08 3.46 6.68 -2.39 -0.02 3.45 16 44 H 0.09 2.77 8.14 -2.39 -0.02 2.75 16 45 H 0.10 2.70 8.14 -2.39 -0.02 2.68 16 46 H 0.08 2.97 6.22 -2.39 -0.01 2.96 16 Total: -1.00 -66.89 385.75 0.57 -66.31 By element: Atomic # 1 Polarization: 52.09 SS G_CDS: -2.25 Total: 49.84 kcal Atomic # 6 Polarization: -15.26 SS G_CDS: 5.04 Total: -10.22 kcal Atomic # 7 Polarization: -124.15 SS G_CDS: -4.19 Total: -128.34 kcal Atomic # 8 Polarization: -22.31 SS G_CDS: -0.06 Total: -22.36 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.76 kcal Total: -66.89 0.57 -66.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265364276.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.489 kcal (2) G-P(sol) polarization free energy of solvation -66.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.315 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds