Wall clock time and date at job start Sat Apr 11 2020 06:04:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99797 * 2 1 4 4 H 1.48500 * 109.47026 * 275.67606 * 3 2 1 5 5 H 1.48504 * 109.47190 * 35.67655 * 3 2 1 6 6 H 1.48500 * 109.47354 * 155.67730 * 3 2 1 7 7 C 1.38810 * 119.99926 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00234 * 337.76627 * 7 2 1 9 9 N 1.36939 * 119.99677 * 157.77092 * 7 2 1 10 10 C 1.46501 * 120.00238 * 321.41943 * 9 7 2 11 11 C 1.53003 * 109.47145 * 270.00493 * 10 9 7 12 12 N 1.46497 * 109.46879 * 179.97438 * 11 10 9 13 13 C 1.34776 * 120.00011 * 179.97438 * 12 11 10 14 14 O 1.21569 * 119.99904 * 0.02562 * 13 12 11 15 15 C 1.47744 * 120.00270 * 180.02562 * 13 12 11 16 16 C 1.41178 * 126.33362 * 180.02562 * 15 13 12 17 17 C 1.36680 * 105.44426 * 179.97438 * 16 15 13 18 18 C 1.48014 * 126.59231 * 179.97438 * 17 16 15 19 19 C 1.39489 * 120.13477 * 0.02562 * 18 17 16 20 20 C 1.37984 * 119.85913 * 180.02562 * 19 18 17 21 21 C 1.38337 * 120.13822 * 359.96914 * 20 19 18 22 22 C 1.38346 * 120.27245 * 0.02976 * 21 20 19 23 23 C 1.37976 * 120.14061 * 359.97438 * 22 21 20 24 24 N 1.36360 * 106.81081 * 0.26381 * 17 16 15 25 25 H 0.96998 * 125.00923 * 179.73662 * 24 17 16 26 26 N 1.28458 * 109.97802 * 359.54762 * 24 17 16 27 27 C 1.46507 * 119.99893 * 141.42264 * 9 7 2 28 28 C 1.52995 * 117.49817 * 3.19136 * 27 9 7 29 29 C 1.52996 * 117.49800 * 294.52907 * 27 9 7 30 30 H 0.96999 * 120.00212 * 0.02562 * 1 2 3 31 31 H 1.08994 * 109.47449 * 150.00109 * 10 9 7 32 32 H 1.09005 * 109.46446 * 30.00262 * 10 9 7 33 33 H 1.09002 * 109.47217 * 59.99828 * 11 10 9 34 34 H 1.08993 * 109.47053 * 299.99655 * 11 10 9 35 35 H 0.96998 * 120.00122 * 0.02562 * 12 11 10 36 36 H 1.08005 * 127.27625 * 359.96514 * 16 15 13 37 37 H 1.08003 * 120.06968 * 359.97438 * 19 18 17 38 38 H 1.07999 * 119.93169 * 180.25366 * 20 19 18 39 39 H 1.07998 * 119.86463 * 179.97438 * 21 20 19 40 40 H 1.08008 * 119.93047 * 179.97438 * 22 21 20 41 41 H 1.08004 * 120.07446 * 179.97438 * 23 22 21 42 42 H 1.09006 * 115.54485 * 148.85954 * 27 9 7 43 43 H 1.09001 * 117.49932 * 359.97438 * 28 27 9 44 44 H 1.09003 * 117.49976 * 145.02184 * 28 27 9 45 45 H 1.09005 * 117.49589 * 214.97918 * 29 27 9 46 46 H 1.08995 * 117.50163 * 359.97405 * 29 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3777 2.1157 -1.3932 5 1 1.5127 2.6151 0.8166 6 1 3.6026 1.4087 0.5766 7 6 2.0103 -1.2021 0.0005 8 1 1.5305 -2.1025 0.3548 9 7 3.3033 -1.2463 -0.4481 10 6 3.7039 -0.4467 -1.6084 11 6 3.5027 -1.2648 -2.8856 12 7 3.9027 -0.4649 -4.0459 13 6 3.8118 -0.9844 -5.2862 14 8 3.3974 -2.1166 -5.4421 15 6 4.2157 -0.1780 -6.4564 16 6 4.1758 -0.5859 -7.8074 17 6 4.6394 0.4818 -8.5238 18 6 4.7930 0.5581 -9.9940 19 6 4.4484 -0.5330 -10.7917 20 6 4.5943 -0.4558 -12.1616 21 6 5.0806 0.7008 -12.7442 22 6 5.4241 1.7864 -11.9584 23 6 5.2828 1.7216 -10.5874 24 7 4.9394 1.4607 -7.6232 25 1 5.2940 2.3349 -7.8489 26 7 4.6796 1.0559 -6.4321 27 6 4.2862 -2.0934 0.2323 28 6 3.7897 -2.9610 1.3905 29 6 4.6554 -1.7304 1.6719 30 1 -0.4850 0.8400 -0.0004 31 1 4.7543 -0.1715 -1.5149 32 1 3.0945 0.4559 -1.6554 33 1 2.4522 -1.5400 -2.9792 34 1 4.1120 -2.1674 -2.8386 35 1 4.2337 0.4383 -3.9215 36 1 3.8482 -1.5400 -8.1932 37 1 4.0689 -1.4367 -10.3379 38 1 4.3240 -1.2985 -12.7807 39 1 5.1934 0.7563 -13.8169 40 1 5.8036 2.6865 -12.4191 41 1 5.5517 2.5695 -9.9749 42 1 5.0733 -2.5022 -0.4015 43 1 2.7319 -2.9013 1.6465 44 1 4.2504 -3.9405 1.5191 45 1 5.6854 -1.9008 1.9856 46 1 4.1675 -0.8612 2.1128 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266600026.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:58 Heat of formation + Delta-G solvation = 117.553093 kcal Electronic energy + Delta-G solvation = -27693.133144 eV Core-core repulsion = 23779.036946 eV Total energy + Delta-G solvation = -3914.096198 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.81191 -39.44085 -39.01270 -37.31670 -34.89898 -33.33354 -32.98854 -32.30555 -31.40009 -31.16003 -29.27339 -27.88685 -24.71760 -23.91599 -23.63210 -22.87796 -21.95504 -21.36181 -21.11663 -19.94731 -19.56707 -18.80834 -17.22479 -16.72605 -16.19679 -15.99362 -15.82978 -15.56589 -15.41449 -15.17862 -14.91152 -14.56225 -14.09396 -13.85386 -13.74098 -13.69907 -13.32665 -13.26929 -13.03418 -12.51533 -12.24167 -11.88697 -11.84360 -11.64100 -11.52265 -11.10671 -10.86278 -10.72021 -10.42729 -10.35442 -10.06385 -9.98909 -9.82753 -9.57881 -9.50673 -9.45182 -9.42576 -8.66839 -8.54035 -8.50911 -6.80049 -6.05718 -3.49894 0.42691 0.91132 1.56540 2.10946 2.49490 3.24389 3.37447 3.40473 3.42445 3.48159 3.56783 4.08489 4.23607 4.41168 4.45357 4.45889 4.64820 4.77572 4.86131 4.92979 4.96817 5.15403 5.23352 5.25108 5.44589 5.48570 5.54676 5.76540 5.78760 5.81234 5.92310 5.99335 6.02145 6.03335 6.08126 6.12823 6.20255 6.43063 6.43910 6.46235 6.61113 6.65882 6.71261 6.86239 6.94424 7.11748 7.53308 7.87019 7.99254 8.35919 8.46081 8.91532 9.63387 10.02124 11.08674 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019918 B = 0.002067 C = 0.001996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.451817 B =13540.062817 C =14027.655694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.040 3.960 3 Si 0.873 3.127 4 H -0.284 1.284 5 H -0.300 1.300 6 H -0.265 1.265 7 C -0.273 4.273 8 H 0.085 0.915 9 N -0.567 5.567 10 C 0.131 3.869 11 C 0.100 3.900 12 N -0.710 5.710 13 C 0.597 3.403 14 O -0.532 6.532 15 C -0.003 4.003 16 C -0.154 4.154 17 C 0.047 3.953 18 C -0.017 4.017 19 C -0.095 4.095 20 C -0.112 4.112 21 C -0.117 4.117 22 C -0.113 4.113 23 C -0.118 4.118 24 N -0.379 5.379 25 H 0.444 0.556 26 N -0.247 5.247 27 C 0.118 3.882 28 C -0.187 4.187 29 C -0.223 4.223 30 H 0.265 0.735 31 H 0.048 0.952 32 H 0.060 0.940 33 H 0.079 0.921 34 H 0.064 0.936 35 H 0.402 0.598 36 H 0.167 0.833 37 H 0.133 0.867 38 H 0.129 0.871 39 H 0.125 0.875 40 H 0.126 0.874 41 H 0.118 0.882 42 H 0.093 0.907 43 H 0.104 0.896 44 H 0.078 0.922 45 H 0.074 0.926 46 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.506 4.044 -23.478 27.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.162 4.162 3 Si 0.703 3.297 4 H -0.212 1.212 5 H -0.228 1.228 6 H -0.190 1.190 7 C -0.401 4.401 8 H 0.103 0.897 9 N -0.286 5.286 10 C 0.005 3.995 11 C -0.025 4.025 12 N -0.361 5.361 13 C 0.380 3.620 14 O -0.407 6.407 15 C -0.163 4.163 16 C -0.181 4.181 17 C -0.077 4.077 18 C -0.018 4.018 19 C -0.114 4.114 20 C -0.130 4.130 21 C -0.136 4.136 22 C -0.131 4.131 23 C -0.137 4.137 24 N -0.094 5.094 25 H 0.289 0.711 26 N -0.083 5.083 27 C 0.010 3.990 28 C -0.225 4.225 29 C -0.264 4.264 30 H 0.074 0.926 31 H 0.066 0.934 32 H 0.078 0.922 33 H 0.098 0.902 34 H 0.082 0.918 35 H 0.236 0.764 36 H 0.184 0.816 37 H 0.151 0.849 38 H 0.147 0.853 39 H 0.143 0.857 40 H 0.144 0.856 41 H 0.136 0.864 42 H 0.111 0.889 43 H 0.122 0.878 44 H 0.096 0.904 45 H 0.092 0.908 46 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 13.240 4.127 -22.740 26.635 hybrid contribution 0.505 1.446 -0.512 1.615 sum 13.744 5.573 -23.253 27.580 Atomic orbital electron populations 1.69865 1.05986 1.26874 1.50454 1.25512 0.95094 0.97807 0.97746 0.86982 0.80976 0.84689 0.77079 1.21219 1.22813 1.18983 1.18740 0.85708 0.94561 1.41120 0.89745 1.43506 1.07132 1.50786 1.27181 1.21322 0.98169 0.94259 0.85784 1.22313 1.01665 0.94759 0.83783 1.45955 1.65317 1.18808 1.05990 1.16860 0.78269 0.85357 0.81505 1.90800 1.46510 1.18027 1.85399 1.22031 1.06938 0.92014 0.95349 1.21731 1.05327 0.99967 0.91106 1.19862 1.06744 0.90643 0.90470 1.17917 1.00684 0.95152 0.88096 1.21212 0.98793 0.97896 0.93527 1.21147 0.99023 0.98289 0.94533 1.21287 0.98754 0.93371 1.00153 1.21049 0.99868 0.98938 0.93277 1.21068 1.00344 0.96800 0.95443 1.43508 1.47940 1.15212 1.02787 0.71061 1.73534 1.16565 1.13771 1.04407 1.21187 0.94130 0.97027 0.86657 1.23078 1.01080 0.93492 1.04818 1.23382 0.98408 0.99771 1.04791 0.92554 0.93361 0.92174 0.90227 0.91808 0.76377 0.81567 0.84936 0.85295 0.85722 0.85600 0.86400 0.88929 0.87799 0.90378 0.90776 0.89281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.79 13.97 55.49 0.78 -26.02 16 2 C 0.04 1.13 5.30 -17.43 -0.09 1.03 16 3 Si 0.87 21.61 25.08 -169.99 -4.26 17.35 16 4 H -0.28 -6.78 6.69 56.52 0.38 -6.40 16 5 H -0.30 -7.62 7.11 56.52 0.40 -7.22 16 6 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 7 C -0.27 -7.39 8.95 -15.06 -0.13 -7.52 16 8 H 0.09 2.48 6.86 -52.49 -0.36 2.12 16 9 N -0.57 -13.09 2.39 -165.66 -0.40 -13.49 16 10 C 0.13 2.72 4.66 -4.04 -0.02 2.70 16 11 C 0.10 1.96 6.00 -4.04 -0.02 1.94 16 12 N -0.71 -12.31 5.55 -61.28 -0.34 -12.65 16 13 C 0.60 10.60 7.83 -12.38 -0.10 10.50 16 14 O -0.53 -11.00 16.92 5.31 0.09 -10.91 16 15 C 0.00 -0.04 7.11 -82.86 -0.59 -0.63 16 16 C -0.15 -1.93 10.16 -39.03 -0.40 -2.33 16 17 C 0.05 0.48 6.98 -82.41 -0.58 -0.09 16 18 C -0.02 -0.14 5.87 -104.96 -0.62 -0.76 16 19 C -0.10 -0.73 9.58 -39.21 -0.38 -1.10 16 20 C -0.11 -0.70 10.03 -39.64 -0.40 -1.10 16 21 C -0.12 -0.67 10.04 -39.51 -0.40 -1.06 16 22 C -0.11 -0.66 10.03 -39.64 -0.40 -1.05 16 23 C -0.12 -0.78 9.71 -39.21 -0.38 -1.16 16 24 N -0.38 -3.69 6.80 33.31 0.23 -3.47 16 25 H 0.44 2.66 8.08 -190.45 -1.54 1.12 16 26 N -0.25 -3.21 11.89 33.37 0.40 -2.82 16 27 C 0.12 2.36 6.56 -67.93 -0.45 1.92 16 28 C -0.19 -3.55 9.80 -26.70 -0.26 -3.81 16 29 C -0.22 -4.21 10.36 -26.69 -0.28 -4.49 16 30 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 31 H 0.05 0.89 8.07 -51.93 -0.42 0.47 16 32 H 0.06 1.36 3.41 -51.93 -0.18 1.19 16 33 H 0.08 1.81 8.14 -51.93 -0.42 1.39 16 34 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.40 6.24 8.19 -40.82 -0.33 5.90 16 36 H 0.17 1.88 7.39 -52.48 -0.39 1.49 16 37 H 0.13 0.90 7.10 -52.48 -0.37 0.53 16 38 H 0.13 0.55 8.06 -52.49 -0.42 0.12 16 39 H 0.12 0.45 8.06 -52.49 -0.42 0.02 16 40 H 0.13 0.46 8.06 -52.48 -0.42 0.04 16 41 H 0.12 0.53 7.20 -52.48 -0.38 0.15 16 42 H 0.09 1.63 8.14 -51.93 -0.42 1.21 16 43 H 0.10 2.23 6.45 -51.93 -0.33 1.90 16 44 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 45 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 46 H 0.09 1.89 8.14 -51.93 -0.42 1.46 16 LS Contribution 386.55 15.07 5.83 5.83 Total: -1.00 -33.66 386.55 -10.43 -44.08 By element: Atomic # 1 Polarization: 16.36 SS G_CDS: -7.27 Total: 9.10 kcal Atomic # 6 Polarization: -1.54 SS G_CDS: -5.48 Total: -7.02 kcal Atomic # 7 Polarization: -59.09 SS G_CDS: 0.66 Total: -58.43 kcal Atomic # 8 Polarization: -11.00 SS G_CDS: 0.09 Total: -10.91 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.26 Total: 17.35 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.66 -10.43 -44.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266600026.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.637 kcal (2) G-P(sol) polarization free energy of solvation -33.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.084 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds