Wall clock time and date at job start Sat Apr 11 2020 06:04:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99797 * 2 1 4 4 H 1.48500 * 109.47026 * 275.67606 * 3 2 1 5 5 H 1.48504 * 109.47190 * 35.67655 * 3 2 1 6 6 H 1.48500 * 109.47354 * 155.67730 * 3 2 1 7 7 C 1.38810 * 119.99926 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00234 * 337.76627 * 7 2 1 9 9 N 1.36939 * 119.99677 * 157.77092 * 7 2 1 10 10 C 1.46501 * 120.00238 * 321.41943 * 9 7 2 11 11 C 1.53003 * 109.47145 * 270.00493 * 10 9 7 12 12 N 1.46497 * 109.46879 * 179.97438 * 11 10 9 13 13 C 1.34776 * 120.00011 * 179.97438 * 12 11 10 14 14 O 1.21569 * 119.99904 * 0.02562 * 13 12 11 15 15 C 1.47744 * 120.00270 * 180.02562 * 13 12 11 16 16 C 1.41178 * 126.33362 * 180.02562 * 15 13 12 17 17 C 1.36680 * 105.44426 * 179.97438 * 16 15 13 18 18 C 1.48014 * 126.59231 * 179.97438 * 17 16 15 19 19 C 1.39489 * 120.13477 * 0.02562 * 18 17 16 20 20 C 1.37984 * 119.85913 * 180.02562 * 19 18 17 21 21 C 1.38337 * 120.13822 * 359.96914 * 20 19 18 22 22 C 1.38346 * 120.27245 * 0.02976 * 21 20 19 23 23 C 1.37976 * 120.14061 * 359.97438 * 22 21 20 24 24 N 1.36360 * 106.81081 * 0.26381 * 17 16 15 25 25 H 0.96998 * 125.00923 * 179.73662 * 24 17 16 26 26 N 1.28458 * 109.97802 * 359.54762 * 24 17 16 27 27 C 1.46507 * 119.99893 * 141.42264 * 9 7 2 28 28 C 1.52995 * 117.49817 * 3.19136 * 27 9 7 29 29 C 1.52996 * 117.49800 * 294.52907 * 27 9 7 30 30 H 0.96999 * 120.00212 * 0.02562 * 1 2 3 31 31 H 1.08994 * 109.47449 * 150.00109 * 10 9 7 32 32 H 1.09005 * 109.46446 * 30.00262 * 10 9 7 33 33 H 1.09002 * 109.47217 * 59.99828 * 11 10 9 34 34 H 1.08993 * 109.47053 * 299.99655 * 11 10 9 35 35 H 0.96998 * 120.00122 * 0.02562 * 12 11 10 36 36 H 1.08005 * 127.27625 * 359.96514 * 16 15 13 37 37 H 1.08003 * 120.06968 * 359.97438 * 19 18 17 38 38 H 1.07999 * 119.93169 * 180.25366 * 20 19 18 39 39 H 1.07998 * 119.86463 * 179.97438 * 21 20 19 40 40 H 1.08008 * 119.93047 * 179.97438 * 22 21 20 41 41 H 1.08004 * 120.07446 * 179.97438 * 23 22 21 42 42 H 1.09006 * 115.54485 * 148.85954 * 27 9 7 43 43 H 1.09001 * 117.49932 * 359.97438 * 28 27 9 44 44 H 1.09003 * 117.49976 * 145.02184 * 28 27 9 45 45 H 1.09005 * 117.49589 * 214.97918 * 29 27 9 46 46 H 1.08995 * 117.50163 * 359.97405 * 29 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3777 2.1157 -1.3932 5 1 1.5127 2.6151 0.8166 6 1 3.6026 1.4087 0.5766 7 6 2.0103 -1.2021 0.0005 8 1 1.5305 -2.1025 0.3548 9 7 3.3033 -1.2463 -0.4481 10 6 3.7039 -0.4467 -1.6084 11 6 3.5027 -1.2648 -2.8856 12 7 3.9027 -0.4649 -4.0459 13 6 3.8118 -0.9844 -5.2862 14 8 3.3974 -2.1166 -5.4421 15 6 4.2157 -0.1780 -6.4564 16 6 4.1758 -0.5859 -7.8074 17 6 4.6394 0.4818 -8.5238 18 6 4.7930 0.5581 -9.9940 19 6 4.4484 -0.5330 -10.7917 20 6 4.5943 -0.4558 -12.1616 21 6 5.0806 0.7008 -12.7442 22 6 5.4241 1.7864 -11.9584 23 6 5.2828 1.7216 -10.5874 24 7 4.9394 1.4607 -7.6232 25 1 5.2940 2.3349 -7.8489 26 7 4.6796 1.0559 -6.4321 27 6 4.2862 -2.0934 0.2323 28 6 3.7897 -2.9610 1.3905 29 6 4.6554 -1.7304 1.6719 30 1 -0.4850 0.8400 -0.0004 31 1 4.7543 -0.1715 -1.5149 32 1 3.0945 0.4559 -1.6554 33 1 2.4522 -1.5400 -2.9792 34 1 4.1120 -2.1674 -2.8386 35 1 4.2337 0.4383 -3.9215 36 1 3.8482 -1.5400 -8.1932 37 1 4.0689 -1.4367 -10.3379 38 1 4.3240 -1.2985 -12.7807 39 1 5.1934 0.7563 -13.8169 40 1 5.8036 2.6865 -12.4191 41 1 5.5517 2.5695 -9.9749 42 1 5.0733 -2.5022 -0.4015 43 1 2.7319 -2.9013 1.6465 44 1 4.2504 -3.9405 1.5191 45 1 5.6854 -1.9008 1.9856 46 1 4.1675 -0.8612 2.1128 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266600026.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:57 Heat of formation + Delta-G solvation = 95.276464 kcal Electronic energy + Delta-G solvation = -27694.099131 eV Core-core repulsion = 23779.036946 eV Total energy + Delta-G solvation = -3915.062185 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -43.73897 -40.55271 -39.84112 -39.00498 -36.44959 -35.01349 -33.85160 -33.39790 -33.03345 -31.78580 -30.13585 -29.43409 -26.44300 -25.30824 -24.34027 -23.76393 -23.20805 -22.87547 -21.90762 -21.49903 -21.10205 -19.51238 -18.66038 -17.91970 -17.53863 -17.34821 -17.16435 -16.96682 -16.50308 -16.07517 -16.05171 -15.75493 -15.45521 -15.09455 -14.81512 -14.73553 -14.34743 -14.25984 -14.20534 -14.06850 -13.81170 -13.56305 -13.35235 -12.69621 -12.54105 -12.43266 -12.10871 -12.02718 -11.93990 -11.84076 -11.75490 -11.40621 -11.32145 -11.06853 -10.96745 -10.65594 -10.58783 -10.11141 -9.91188 -9.22147 -8.69543 -8.22349 -5.63485 -0.18602 0.43555 0.45520 1.27149 1.34262 1.39632 1.51331 1.66473 2.06588 2.26521 2.38998 2.91202 2.98583 3.13422 3.30137 3.33720 3.44336 3.80003 4.02221 4.07839 4.10236 4.21872 4.25150 4.29197 4.37788 4.40423 4.41044 4.47705 4.53356 4.57575 4.74248 4.90233 4.93194 4.96269 5.02876 5.07147 5.08515 5.16635 5.29139 5.37338 5.46619 5.49670 5.55538 5.58425 5.90393 5.92275 6.01338 6.19802 6.38143 6.72674 6.94370 7.08916 7.58267 7.98295 8.96368 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019918 B = 0.002067 C = 0.001996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.451817 B =13540.062817 C =14027.655694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.019 4.019 3 Si 0.938 3.062 4 H -0.269 1.269 5 H -0.311 1.311 6 H -0.251 1.251 7 C -0.256 4.256 8 H 0.045 0.955 9 N -0.580 5.580 10 C 0.132 3.868 11 C 0.117 3.883 12 N -0.704 5.704 13 C 0.597 3.403 14 O -0.570 6.570 15 C -0.029 4.029 16 C -0.176 4.176 17 C 0.071 3.929 18 C -0.042 4.042 19 C -0.108 4.108 20 C -0.121 4.121 21 C -0.115 4.115 22 C -0.119 4.119 23 C -0.118 4.118 24 N -0.359 5.359 25 H 0.462 0.538 26 N -0.252 5.252 27 C 0.101 3.899 28 C -0.188 4.188 29 C -0.207 4.207 30 H 0.263 0.737 31 H 0.085 0.915 32 H 0.043 0.957 33 H 0.038 0.962 34 H 0.069 0.931 35 H 0.413 0.587 36 H 0.169 0.831 37 H 0.131 0.869 38 H 0.146 0.854 39 H 0.148 0.852 40 H 0.151 0.849 41 H 0.139 0.861 42 H 0.126 0.874 43 H 0.068 0.932 44 H 0.112 0.888 45 H 0.113 0.887 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.027 5.731 -25.800 31.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.216 4.216 3 Si 0.766 3.234 4 H -0.196 1.196 5 H -0.240 1.240 6 H -0.175 1.175 7 C -0.385 4.385 8 H 0.063 0.937 9 N -0.300 5.300 10 C 0.006 3.994 11 C -0.009 4.009 12 N -0.355 5.355 13 C 0.382 3.618 14 O -0.448 6.448 15 C -0.188 4.188 16 C -0.204 4.204 17 C -0.055 4.055 18 C -0.044 4.044 19 C -0.127 4.127 20 C -0.138 4.138 21 C -0.133 4.133 22 C -0.137 4.137 23 C -0.137 4.137 24 N -0.077 5.077 25 H 0.311 0.689 26 N -0.090 5.090 27 C -0.006 4.006 28 C -0.226 4.226 29 C -0.247 4.247 30 H 0.072 0.928 31 H 0.103 0.897 32 H 0.061 0.939 33 H 0.056 0.944 34 H 0.087 0.913 35 H 0.249 0.751 36 H 0.186 0.814 37 H 0.149 0.851 38 H 0.164 0.836 39 H 0.166 0.834 40 H 0.169 0.831 41 H 0.157 0.843 42 H 0.144 0.856 43 H 0.086 0.914 44 H 0.130 0.870 45 H 0.131 0.869 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 16.823 5.840 -25.067 30.749 hybrid contribution -0.548 0.851 0.041 1.013 sum 16.275 6.691 -25.027 30.594 Atomic orbital electron populations 1.70004 1.07783 1.27481 1.53525 1.26140 0.95660 1.01335 0.98477 0.85924 0.79800 0.80051 0.77612 1.19591 1.23970 1.17509 1.18546 0.87446 0.93121 1.39416 0.93691 1.43587 1.06420 1.51585 1.28421 1.21358 0.99700 0.93175 0.85130 1.21900 0.99286 0.95197 0.84499 1.45791 1.65224 1.19075 1.05397 1.17225 0.77272 0.85141 0.82146 1.90766 1.48199 1.19813 1.86027 1.21606 1.09398 0.92894 0.94875 1.21847 1.06810 1.01150 0.90565 1.20022 1.04490 0.89573 0.91374 1.17970 1.03063 0.96537 0.86831 1.21383 0.99034 0.97911 0.94405 1.21414 0.98953 0.99376 0.94092 1.21677 0.97198 0.92880 1.01533 1.21410 0.99361 0.99914 0.92970 1.21366 0.99353 0.96650 0.96316 1.43558 1.46453 1.15821 1.01855 0.68883 1.73443 1.16779 1.12954 1.05798 1.21550 0.94410 0.97082 0.87571 1.23063 0.99559 0.95501 1.04525 1.23356 0.99999 0.98333 1.03034 0.92821 0.89715 0.93948 0.94358 0.91255 0.75079 0.81391 0.85104 0.83601 0.83382 0.83149 0.84295 0.85603 0.91357 0.86974 0.86878 0.91943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.46 13.97 21.65 0.30 -59.16 16 2 C -0.02 -1.12 5.30 84.86 0.45 -0.67 16 3 Si 0.94 45.36 25.08 68.60 1.72 47.08 16 4 H -0.27 -12.21 6.69 99.48 0.67 -11.55 16 5 H -0.31 -15.46 7.11 99.48 0.71 -14.75 16 6 H -0.25 -11.45 7.11 99.48 0.71 -10.75 16 7 C -0.26 -14.33 8.95 84.03 0.75 -13.58 16 8 H 0.05 2.83 6.86 -2.91 -0.02 2.81 16 9 N -0.58 -26.62 2.39 -678.03 -1.62 -28.24 16 10 C 0.13 5.33 4.66 86.38 0.40 5.74 16 11 C 0.12 4.64 6.00 86.38 0.52 5.16 16 12 N -0.70 -24.27 5.55 -466.07 -2.59 -26.86 16 13 C 0.60 21.59 7.83 86.76 0.68 22.27 16 14 O -0.57 -24.46 16.92 -3.93 -0.07 -24.53 16 15 C -0.03 -0.86 7.11 42.38 0.30 -0.56 16 16 C -0.18 -4.44 10.16 22.63 0.23 -4.21 16 17 C 0.07 1.36 6.98 40.67 0.28 1.65 16 18 C -0.04 -0.64 5.87 -20.08 -0.12 -0.76 16 19 C -0.11 -1.54 9.58 22.51 0.22 -1.32 16 20 C -0.12 -1.26 10.03 22.23 0.22 -1.03 16 21 C -0.11 -0.95 10.04 22.32 0.22 -0.72 16 22 C -0.12 -0.97 10.03 22.23 0.22 -0.74 16 23 C -0.12 -1.23 9.71 22.51 0.22 -1.01 16 24 N -0.36 -6.29 6.80 -48.52 -0.33 -6.62 16 25 H 0.46 4.23 8.08 -220.00 -1.78 2.45 16 26 N -0.25 -6.26 11.89 -48.34 -0.57 -6.84 16 27 C 0.10 3.83 6.56 44.99 0.30 4.13 16 28 C -0.19 -6.98 9.80 30.62 0.30 -6.68 16 29 C -0.21 -7.32 10.36 30.62 0.32 -7.00 16 30 H 0.26 15.71 8.31 -92.71 -0.77 14.94 16 31 H 0.08 2.83 8.07 -2.39 -0.02 2.81 16 32 H 0.04 1.88 3.41 -2.38 -0.01 1.87 16 33 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 35 H 0.41 12.36 8.19 -92.71 -0.76 11.60 16 36 H 0.17 3.98 7.39 -2.91 -0.02 3.96 16 37 H 0.13 1.78 7.10 -2.91 -0.02 1.76 16 38 H 0.15 0.93 8.06 -2.91 -0.02 0.90 16 39 H 0.15 0.49 8.06 -2.91 -0.02 0.47 16 40 H 0.15 0.46 8.06 -2.91 -0.02 0.44 16 41 H 0.14 0.74 7.20 -2.91 -0.02 0.72 16 42 H 0.13 3.97 8.14 -2.38 -0.02 3.95 16 43 H 0.07 3.04 6.45 -2.39 -0.02 3.02 16 44 H 0.11 3.36 8.14 -2.39 -0.02 3.34 16 45 H 0.11 3.15 8.14 -2.38 -0.02 3.13 16 46 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 Total: -1.00 -77.23 386.55 0.82 -76.42 By element: Atomic # 1 Polarization: 29.66 SS G_CDS: -1.54 Total: 28.12 kcal Atomic # 6 Polarization: -4.88 SS G_CDS: 5.52 Total: 0.64 kcal Atomic # 7 Polarization: -122.91 SS G_CDS: -4.81 Total: -127.72 kcal Atomic # 8 Polarization: -24.46 SS G_CDS: -0.07 Total: -24.53 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 1.72 Total: 47.08 kcal Total: -77.23 0.82 -76.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266600026.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.692 kcal (2) G-P(sol) polarization free energy of solvation -77.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.416 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds