Wall clock time and date at job start Sat Apr 11 2020 06:05:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86799 * 119.99891 * 2 1 4 4 H 1.48504 * 109.47047 * 240.00293 * 3 2 1 5 5 H 1.48506 * 109.47167 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.47097 * 120.00340 * 3 2 1 7 7 C 1.38807 * 119.99791 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99866 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00173 * 359.97438 * 7 2 1 10 10 C 1.46508 * 119.99763 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.46855 * 179.97438 * 10 9 7 12 12 H 1.09009 * 109.47173 * 65.00093 * 11 10 9 13 13 N 1.46501 * 109.47284 * 304.99793 * 11 10 9 14 14 C 1.34773 * 119.99856 * 155.00025 * 13 11 10 15 15 O 1.21587 * 120.00276 * 0.02562 * 14 13 11 16 16 C 1.47625 * 119.99896 * 180.02562 * 14 13 11 17 17 C 1.39758 * 120.02839 * 359.72526 * 16 14 13 18 18 C 1.37608 * 119.97281 * 180.27791 * 17 16 14 19 19 C 1.39523 * 120.02965 * 359.97438 * 18 17 16 20 20 C 1.48276 * 119.97595 * 179.97438 * 19 18 17 21 21 C 1.40943 * 126.25109 * 180.02562 * 20 19 18 22 22 N 1.30628 * 108.07055 * 179.97438 * 21 20 19 23 23 N 1.39996 * 108.56650 * 0.02562 * 22 21 20 24 24 H 0.96999 * 125.87419 * 179.97438 * 23 22 21 25 25 C 1.34717 * 108.25920 * 359.76413 * 23 22 21 26 26 C 1.39525 * 120.05417 * 359.97438 * 19 18 17 27 27 C 1.37604 * 120.02981 * 0.02562 * 26 19 18 28 28 C 1.52998 * 109.46995 * 185.00031 * 11 10 9 29 29 C 1.53004 * 117.49867 * 248.74719 * 28 11 10 30 30 C 1.53004 * 117.50031 * 180.08920 * 28 11 10 31 31 H 0.97000 * 119.99591 * 359.97438 * 1 2 3 32 32 H 0.96995 * 120.00044 * 359.97438 * 9 7 2 33 33 H 1.08998 * 109.46837 * 59.99667 * 10 9 7 34 34 H 1.08997 * 109.46745 * 299.99777 * 10 9 7 35 35 H 0.97000 * 119.99761 * 335.00671 * 13 11 10 36 36 H 1.08000 * 120.01493 * 0.24879 * 17 16 14 37 37 H 1.08004 * 119.98984 * 179.97438 * 18 17 16 38 38 H 1.08002 * 125.95826 * 359.94568 * 21 20 19 39 39 H 1.07992 * 126.20097 * 180.22993 * 25 23 22 40 40 H 1.08002 * 119.98670 * 180.02562 * 26 19 18 41 41 H 1.07998 * 120.01504 * 179.97438 * 27 26 19 42 42 H 1.09001 * 115.55234 * 34.41304 * 28 11 10 43 43 H 1.08999 * 117.49887 * 359.97438 * 29 28 11 44 44 H 1.08998 * 117.49722 * 145.01880 * 29 28 11 45 45 H 1.08996 * 117.49897 * 214.98282 * 30 28 11 46 46 H 1.09003 * 117.49394 * 359.97242 * 30 28 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2126 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6964 1.2124 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0582 -3.6568 -0.0005 11 6 1.0639 -4.8197 0.0001 12 1 0.4973 -4.8139 -0.9311 13 7 0.1449 -4.6758 1.1319 14 6 -1.0796 -5.2367 1.0811 15 8 -1.4213 -5.8625 0.0962 16 6 -2.0059 -5.0913 2.2213 17 6 -1.6116 -4.3770 3.3561 18 6 -2.4739 -4.2470 4.4206 19 6 -3.7415 -4.8275 4.3672 20 6 -4.6694 -4.6871 5.5152 21 6 -5.9727 -5.2166 5.6030 22 7 -6.4689 -4.8815 6.7639 23 7 -5.5121 -4.1311 7.4578 24 1 -5.6191 -3.7549 8.3454 25 6 -4.4154 -4.0252 6.6826 26 6 -4.1367 -5.5399 3.2346 27 6 -3.2764 -5.6713 2.1687 28 6 1.8248 -6.1411 0.1258 29 6 1.8339 -7.0696 -1.0903 30 6 1.0023 -7.4311 0.1430 31 1 -0.4849 0.8401 0.0004 32 1 0.3556 -2.3880 0.0002 33 1 2.6848 -3.7145 0.8894 34 1 2.6848 -3.7145 -0.8905 35 1 0.4176 -4.1769 1.9177 36 1 -0.6304 -3.9276 3.3976 37 1 -2.1693 -3.6955 5.2978 38 1 -6.4737 -5.7975 4.8427 39 1 -3.5018 -3.5088 6.9373 40 1 -5.1184 -5.9884 3.1943 41 1 -3.5824 -6.2232 1.2923 42 1 2.7239 -6.1092 0.7413 43 1 1.2974 -6.7392 -1.9797 44 1 2.7387 -7.6487 -1.2745 45 1 1.3603 -8.2480 0.7696 46 1 -0.0810 -7.3383 0.0651 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269125607.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:28 Heat of formation + Delta-G solvation = 102.022782 kcal Electronic energy + Delta-G solvation = -28318.461613 eV Core-core repulsion = 24403.691970 eV Total energy + Delta-G solvation = -3914.769643 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.52778 -40.07925 -38.50289 -36.92333 -34.99625 -33.51307 -32.73746 -31.76487 -31.26268 -30.68176 -28.99935 -27.74989 -24.34046 -23.72404 -23.22979 -22.11166 -21.56783 -21.39695 -21.07846 -20.15707 -19.86517 -18.50902 -17.73437 -16.98631 -16.20407 -15.43765 -15.26163 -15.10298 -15.00181 -14.92752 -14.72041 -14.34704 -14.24007 -13.66492 -13.54231 -13.39417 -13.15234 -13.00175 -12.86261 -12.55008 -12.18005 -12.02607 -11.64080 -11.19776 -11.10295 -11.03879 -10.92471 -10.87700 -10.79501 -10.21243 -10.10916 -10.07648 -9.92270 -9.84402 -9.68976 -9.51333 -8.98459 -8.91600 -8.59961 -7.99194 -6.96709 -5.78004 -3.08234 0.67052 1.43451 1.61639 2.44074 2.50810 3.27783 3.41409 3.43460 3.47129 3.47953 4.05848 4.19354 4.31462 4.48404 4.55344 4.73920 4.90434 4.92878 4.95054 5.11823 5.15198 5.21376 5.26399 5.32468 5.36420 5.48933 5.55175 5.68184 5.78475 5.84936 5.88807 5.93491 5.99815 6.11612 6.12546 6.24893 6.38151 6.39870 6.45237 6.49056 6.51588 6.57010 6.69699 6.84575 6.87409 6.98575 7.26320 7.67093 7.91381 8.39426 8.57807 9.51193 10.06959 10.42635 11.43923 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.008411 B = 0.003073 C = 0.002369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3328.288846 B = 9108.961580 C =11814.584810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.011 4.011 3 Si 0.907 3.093 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.243 4.243 8 H 0.070 0.930 9 N -0.731 5.731 10 C 0.148 3.852 11 C 0.169 3.831 12 H 0.089 0.911 13 N -0.702 5.702 14 C 0.561 3.439 15 O -0.546 6.546 16 C -0.136 4.136 17 C -0.070 4.070 18 C -0.130 4.130 19 C 0.024 3.976 20 C -0.202 4.202 21 C 0.070 3.930 22 N -0.296 5.296 23 N -0.473 5.473 24 H 0.442 0.558 25 C 0.079 3.921 26 C -0.130 4.130 27 C -0.052 4.052 28 C -0.163 4.163 29 C -0.171 4.171 30 C -0.185 4.185 31 H 0.256 0.744 32 H 0.386 0.614 33 H 0.024 0.976 34 H 0.036 0.964 35 H 0.403 0.597 36 H 0.130 0.870 37 H 0.125 0.875 38 H 0.188 0.812 39 H 0.183 0.817 40 H 0.127 0.873 41 H 0.136 0.864 42 H 0.102 0.898 43 H 0.094 0.906 44 H 0.089 0.911 45 H 0.082 0.918 46 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.628 -13.368 13.291 19.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.207 4.207 3 Si 0.738 3.262 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.375 4.375 8 H 0.088 0.912 9 N -0.377 5.377 10 C 0.020 3.980 11 C 0.064 3.936 12 H 0.107 0.893 13 N -0.351 5.351 14 C 0.349 3.651 15 O -0.426 6.426 16 C -0.139 4.139 17 C -0.089 4.089 18 C -0.148 4.148 19 C 0.022 3.978 20 C -0.213 4.213 21 C -0.117 4.117 22 N -0.118 5.118 23 N -0.180 5.180 24 H 0.286 0.714 25 C -0.070 4.070 26 C -0.148 4.148 27 C -0.071 4.071 28 C -0.183 4.183 29 C -0.209 4.209 30 C -0.222 4.222 31 H 0.066 0.934 32 H 0.221 0.779 33 H 0.042 0.958 34 H 0.053 0.947 35 H 0.239 0.761 36 H 0.147 0.853 37 H 0.142 0.858 38 H 0.205 0.795 39 H 0.200 0.800 40 H 0.145 0.855 41 H 0.154 0.846 42 H 0.121 0.879 43 H 0.113 0.887 44 H 0.107 0.893 45 H 0.100 0.900 46 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -7.748 -13.732 13.358 20.665 hybrid contribution 1.136 1.613 0.306 1.996 sum -6.612 -12.119 13.664 19.424 Atomic orbital electron populations 1.69666 1.05051 1.25783 1.57250 1.24749 0.95500 0.97656 1.02838 0.86277 0.78507 0.83581 0.77827 1.21274 1.21715 1.21303 1.19156 0.90977 0.84048 1.43277 0.91208 1.42350 1.06019 0.99688 1.89600 1.20922 0.93027 0.85120 0.98962 1.20813 0.90134 0.92751 0.89909 0.89330 1.45875 1.14399 1.54122 1.20747 1.18153 0.81582 0.78718 0.86616 1.90669 1.76359 1.42135 1.33415 1.19997 0.95921 1.02847 0.95150 1.21266 0.99680 0.95693 0.92247 1.20951 0.93306 1.01387 0.99170 1.18187 0.92187 0.95596 0.91782 1.18992 0.96362 1.09821 0.96173 1.24048 0.93614 0.98908 0.95149 1.77229 1.13853 1.13258 1.07437 1.46218 1.11041 1.43361 1.17359 0.71443 1.22725 0.92870 0.99694 0.91707 1.20977 1.00001 1.00860 0.93004 1.21143 0.91733 0.96131 0.98094 1.22645 1.01453 0.91480 1.02674 1.22895 1.02011 1.03172 0.92811 1.23270 1.00761 0.97405 1.00726 0.93438 0.77949 0.95790 0.94651 0.76132 0.85261 0.85757 0.79533 0.80039 0.85549 0.84649 0.87940 0.88742 0.89270 0.89952 0.86415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.69 13.06 55.49 0.72 -26.97 16 2 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 3 Si 0.91 22.02 29.55 -169.99 -5.02 17.00 16 4 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.24 -6.63 9.99 -15.06 -0.15 -6.78 16 8 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 9 N -0.73 -17.93 5.43 -59.91 -0.33 -18.26 16 10 C 0.15 2.86 5.80 -4.04 -0.02 2.84 16 11 C 0.17 2.86 2.43 -67.93 -0.17 2.70 16 12 H 0.09 1.72 7.34 -51.92 -0.38 1.33 16 13 N -0.70 -11.38 4.45 -54.82 -0.24 -11.63 16 14 C 0.56 9.40 7.10 -12.43 -0.09 9.31 16 15 O -0.55 -10.35 13.36 5.29 0.07 -10.28 16 16 C -0.14 -1.97 5.88 -104.93 -0.62 -2.58 16 17 C -0.07 -0.89 9.52 -39.24 -0.37 -1.27 16 18 C -0.13 -1.42 9.54 -39.33 -0.38 -1.80 16 19 C 0.02 0.26 5.88 -104.81 -0.62 -0.36 16 20 C -0.20 -1.94 6.04 -105.34 -0.64 -2.58 16 21 C 0.07 0.66 11.42 -17.04 -0.19 0.46 16 22 N -0.30 -2.99 12.66 30.82 0.39 -2.60 16 23 N -0.47 -3.50 7.32 30.64 0.22 -3.28 16 24 H 0.44 1.79 8.96 -182.68 -1.64 0.15 16 25 C 0.08 0.59 11.38 -16.88 -0.19 0.40 16 26 C -0.13 -1.43 9.56 -39.33 -0.38 -1.80 16 27 C -0.05 -0.68 9.58 -39.24 -0.38 -1.06 16 28 C -0.16 -2.33 5.36 -90.62 -0.49 -2.82 16 29 C -0.17 -2.28 10.18 -26.69 -0.27 -2.56 16 30 C -0.18 -2.58 9.74 -26.69 -0.26 -2.84 16 31 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 32 H 0.39 10.16 7.33 -40.82 -0.30 9.86 16 33 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.40 6.17 6.62 -40.82 -0.27 5.90 16 36 H 0.13 1.54 6.39 -52.49 -0.34 1.20 16 37 H 0.12 1.03 7.00 -52.48 -0.37 0.67 16 38 H 0.19 1.27 7.34 -52.49 -0.39 0.88 16 39 H 0.18 0.80 7.27 -52.49 -0.38 0.42 16 40 H 0.13 1.05 7.03 -52.49 -0.37 0.68 16 41 H 0.14 1.74 7.64 -52.49 -0.40 1.34 16 42 H 0.10 1.36 8.11 -51.93 -0.42 0.94 16 43 H 0.09 1.32 8.05 -51.93 -0.42 0.91 16 44 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 45 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 46 H 0.12 1.91 5.02 -51.93 -0.26 1.65 16 LS Contribution 384.84 15.07 5.80 5.80 Total: -1.00 -34.16 384.84 -10.84 -45.00 By element: Atomic # 1 Polarization: 23.48 SS G_CDS: -7.16 Total: 16.32 kcal Atomic # 6 Polarization: -5.82 SS G_CDS: -5.30 Total: -11.12 kcal Atomic # 7 Polarization: -63.49 SS G_CDS: 0.77 Total: -62.72 kcal Atomic # 8 Polarization: -10.35 SS G_CDS: 0.07 Total: -10.28 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.16 -10.84 -45.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269125607.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.023 kcal (2) G-P(sol) polarization free energy of solvation -34.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.000 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds