Wall clock time and date at job start Sat Apr 11 2020 06:05:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86799 * 119.99891 * 2 1 4 4 H 1.48504 * 109.47047 * 240.00293 * 3 2 1 5 5 H 1.48506 * 109.47167 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.47097 * 120.00340 * 3 2 1 7 7 C 1.38807 * 119.99791 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99866 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00173 * 359.97438 * 7 2 1 10 10 C 1.46508 * 119.99763 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.46855 * 179.97438 * 10 9 7 12 12 H 1.09009 * 109.47173 * 65.00093 * 11 10 9 13 13 N 1.46501 * 109.47284 * 304.99793 * 11 10 9 14 14 C 1.34773 * 119.99856 * 155.00025 * 13 11 10 15 15 O 1.21587 * 120.00276 * 0.02562 * 14 13 11 16 16 C 1.47625 * 119.99896 * 180.02562 * 14 13 11 17 17 C 1.39758 * 120.02839 * 359.72526 * 16 14 13 18 18 C 1.37608 * 119.97281 * 180.27791 * 17 16 14 19 19 C 1.39523 * 120.02965 * 359.97438 * 18 17 16 20 20 C 1.48276 * 119.97595 * 179.97438 * 19 18 17 21 21 C 1.40943 * 126.25109 * 180.02562 * 20 19 18 22 22 N 1.30628 * 108.07055 * 179.97438 * 21 20 19 23 23 N 1.39996 * 108.56650 * 0.02562 * 22 21 20 24 24 H 0.96999 * 125.87419 * 179.97438 * 23 22 21 25 25 C 1.34717 * 108.25920 * 359.76413 * 23 22 21 26 26 C 1.39525 * 120.05417 * 359.97438 * 19 18 17 27 27 C 1.37604 * 120.02981 * 0.02562 * 26 19 18 28 28 C 1.52998 * 109.46995 * 185.00031 * 11 10 9 29 29 C 1.53004 * 117.49867 * 248.74719 * 28 11 10 30 30 C 1.53004 * 117.50031 * 180.08920 * 28 11 10 31 31 H 0.97000 * 119.99591 * 359.97438 * 1 2 3 32 32 H 0.96995 * 120.00044 * 359.97438 * 9 7 2 33 33 H 1.08998 * 109.46837 * 59.99667 * 10 9 7 34 34 H 1.08997 * 109.46745 * 299.99777 * 10 9 7 35 35 H 0.97000 * 119.99761 * 335.00671 * 13 11 10 36 36 H 1.08000 * 120.01493 * 0.24879 * 17 16 14 37 37 H 1.08004 * 119.98984 * 179.97438 * 18 17 16 38 38 H 1.08002 * 125.95826 * 359.94568 * 21 20 19 39 39 H 1.07992 * 126.20097 * 180.22993 * 25 23 22 40 40 H 1.08002 * 119.98670 * 180.02562 * 26 19 18 41 41 H 1.07998 * 120.01504 * 179.97438 * 27 26 19 42 42 H 1.09001 * 115.55234 * 34.41304 * 28 11 10 43 43 H 1.08999 * 117.49887 * 359.97438 * 29 28 11 44 44 H 1.08998 * 117.49722 * 145.01880 * 29 28 11 45 45 H 1.08996 * 117.49897 * 214.98282 * 30 28 11 46 46 H 1.09003 * 117.49394 * 359.97242 * 30 28 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2126 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6964 1.2124 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0582 -3.6568 -0.0005 11 6 1.0639 -4.8197 0.0001 12 1 0.4973 -4.8139 -0.9311 13 7 0.1449 -4.6758 1.1319 14 6 -1.0796 -5.2367 1.0811 15 8 -1.4213 -5.8625 0.0962 16 6 -2.0059 -5.0913 2.2213 17 6 -1.6116 -4.3770 3.3561 18 6 -2.4739 -4.2470 4.4206 19 6 -3.7415 -4.8275 4.3672 20 6 -4.6694 -4.6871 5.5152 21 6 -5.9727 -5.2166 5.6030 22 7 -6.4689 -4.8815 6.7639 23 7 -5.5121 -4.1311 7.4578 24 1 -5.6191 -3.7549 8.3454 25 6 -4.4154 -4.0252 6.6826 26 6 -4.1367 -5.5399 3.2346 27 6 -3.2764 -5.6713 2.1687 28 6 1.8248 -6.1411 0.1258 29 6 1.8339 -7.0696 -1.0903 30 6 1.0023 -7.4311 0.1430 31 1 -0.4849 0.8401 0.0004 32 1 0.3556 -2.3880 0.0002 33 1 2.6848 -3.7145 0.8894 34 1 2.6848 -3.7145 -0.8905 35 1 0.4176 -4.1769 1.9177 36 1 -0.6304 -3.9276 3.3976 37 1 -2.1693 -3.6955 5.2978 38 1 -6.4737 -5.7975 4.8427 39 1 -3.5018 -3.5088 6.9373 40 1 -5.1184 -5.9884 3.1943 41 1 -3.5824 -6.2232 1.2923 42 1 2.7239 -6.1092 0.7413 43 1 1.2974 -6.7392 -1.9797 44 1 2.7387 -7.6487 -1.2745 45 1 1.3603 -8.2480 0.7696 46 1 -0.0810 -7.3383 0.0651 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269125607.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:27 Heat of formation + Delta-G solvation = 80.156312 kcal Electronic energy + Delta-G solvation = -28319.409814 eV Core-core repulsion = 24403.691970 eV Total energy + Delta-G solvation = -3915.717844 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.18739 -41.28803 -39.53008 -38.17273 -36.60253 -35.04931 -33.71070 -32.90730 -32.47591 -31.72636 -30.10952 -29.08554 -25.99872 -24.93182 -24.05907 -23.27813 -23.04089 -22.22225 -22.06648 -21.31084 -20.87828 -19.41909 -19.11594 -18.52052 -17.46413 -16.71282 -16.57745 -16.27053 -15.94678 -15.90238 -15.64958 -15.57133 -15.21768 -15.17419 -14.91280 -14.56153 -14.45379 -14.27215 -13.73869 -13.69307 -13.46904 -13.16727 -13.02707 -12.74214 -12.69036 -12.45812 -12.26164 -12.10317 -11.91672 -11.82863 -11.69372 -11.25143 -11.08831 -10.95545 -10.80773 -10.75902 -10.63997 -9.93059 -9.90041 -8.99682 -8.79754 -7.91363 -5.21655 -0.25370 0.52239 0.95888 1.49818 1.52566 1.58396 1.58726 1.99174 2.17711 2.23656 2.57923 3.03629 3.10282 3.42280 3.59278 3.61071 3.81284 3.86327 3.99359 4.03799 4.11663 4.14555 4.18855 4.26680 4.38646 4.44621 4.48047 4.50452 4.59241 4.65411 4.83145 4.84366 4.92336 4.95213 5.06485 5.12634 5.14054 5.30516 5.33779 5.40893 5.47823 5.52274 5.59525 5.61526 5.63754 5.98932 6.28165 6.36145 6.63024 6.64110 7.29424 7.35725 8.08394 8.33056 9.31115 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.008411 B = 0.003073 C = 0.002369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3328.288846 B = 9108.961580 C =11814.584810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.072 4.072 3 Si 0.973 3.027 4 H -0.282 1.282 5 H -0.299 1.299 6 H -0.274 1.274 7 C -0.245 4.245 8 H 0.079 0.921 9 N -0.743 5.743 10 C 0.150 3.850 11 C 0.178 3.822 12 H 0.057 0.943 13 N -0.699 5.699 14 C 0.557 3.443 15 O -0.577 6.577 16 C -0.165 4.165 17 C -0.076 4.076 18 C -0.132 4.132 19 C 0.035 3.965 20 C -0.232 4.232 21 C 0.066 3.934 22 N -0.328 5.328 23 N -0.464 5.464 24 H 0.455 0.545 25 C 0.098 3.902 26 C -0.132 4.132 27 C -0.063 4.063 28 C -0.164 4.164 29 C -0.164 4.164 30 C -0.183 4.183 31 H 0.250 0.750 32 H 0.374 0.626 33 H 0.042 0.958 34 H 0.037 0.963 35 H 0.407 0.593 36 H 0.133 0.867 37 H 0.155 0.845 38 H 0.203 0.797 39 H 0.217 0.783 40 H 0.151 0.849 41 H 0.128 0.872 42 H 0.122 0.878 43 H 0.080 0.920 44 H 0.117 0.883 45 H 0.103 0.897 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.520 -13.395 15.457 21.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.265 4.265 3 Si 0.802 3.198 4 H -0.208 1.208 5 H -0.225 1.225 6 H -0.200 1.200 7 C -0.376 4.376 8 H 0.097 0.903 9 N -0.386 5.386 10 C 0.023 3.977 11 C 0.073 3.927 12 H 0.075 0.925 13 N -0.349 5.349 14 C 0.346 3.654 15 O -0.460 6.460 16 C -0.168 4.168 17 C -0.095 4.095 18 C -0.150 4.150 19 C 0.033 3.967 20 C -0.243 4.243 21 C -0.121 4.121 22 N -0.150 5.150 23 N -0.172 5.172 24 H 0.302 0.698 25 C -0.052 4.052 26 C -0.150 4.150 27 C -0.082 4.082 28 C -0.184 4.184 29 C -0.201 4.201 30 C -0.220 4.220 31 H 0.058 0.942 32 H 0.206 0.794 33 H 0.060 0.940 34 H 0.055 0.945 35 H 0.244 0.756 36 H 0.150 0.850 37 H 0.173 0.827 38 H 0.220 0.780 39 H 0.233 0.767 40 H 0.169 0.831 41 H 0.146 0.854 42 H 0.140 0.860 43 H 0.099 0.901 44 H 0.135 0.865 45 H 0.122 0.878 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -6.608 -13.782 15.557 21.809 hybrid contribution 0.742 1.581 -0.287 1.770 sum -5.866 -12.201 15.270 20.407 Atomic orbital electron populations 1.69840 1.06617 1.26001 1.59253 1.25550 0.96288 1.01017 1.03625 0.85222 0.77127 0.79228 0.78192 1.20793 1.22514 1.19976 1.19582 0.91562 0.85044 1.41450 0.90297 1.42519 1.05627 1.00896 1.89551 1.21042 0.93303 0.83823 0.99485 1.20575 0.89568 0.93506 0.89038 0.92458 1.45825 1.14389 1.54150 1.20531 1.18581 0.81769 0.78028 0.86973 1.90642 1.76917 1.43602 1.34816 1.19940 0.96266 1.05312 0.95270 1.21366 1.00303 0.95552 0.92270 1.21274 0.92955 1.01215 0.99517 1.18373 0.92259 0.94201 0.91879 1.19033 0.96556 1.11934 0.96767 1.24392 0.93703 0.98659 0.95323 1.77196 1.15160 1.14569 1.08069 1.46295 1.10541 1.42485 1.17881 0.69756 1.23254 0.93507 0.97860 0.90622 1.21233 1.00632 1.00730 0.92403 1.21192 0.91816 0.96455 0.98727 1.22565 1.01794 0.90013 1.04002 1.22980 1.02658 1.02569 0.91897 1.23199 0.99434 0.97726 1.01634 0.94158 0.79413 0.94000 0.94503 0.75643 0.84957 0.82719 0.78003 0.76701 0.83149 0.85449 0.85965 0.90097 0.86525 0.87828 0.88927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.61 13.06 21.65 0.28 -58.33 16 2 C -0.07 -4.07 5.50 84.86 0.47 -3.60 16 3 Si 0.97 45.22 29.55 68.60 2.03 47.25 16 4 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 5 H -0.30 -14.12 7.11 99.48 0.71 -13.42 16 6 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 7 C -0.24 -13.26 9.99 84.03 0.84 -12.42 16 8 H 0.08 4.05 7.83 -2.91 -0.02 4.03 16 9 N -0.74 -36.78 5.43 -343.45 -1.87 -38.65 16 10 C 0.15 5.78 5.80 86.38 0.50 6.28 16 11 C 0.18 6.16 2.43 44.99 0.11 6.27 16 12 H 0.06 2.34 7.34 -2.38 -0.02 2.33 16 13 N -0.70 -23.40 4.45 -445.61 -1.98 -25.38 16 14 C 0.56 19.63 7.10 86.72 0.62 20.25 16 15 O -0.58 -23.36 13.36 -3.99 -0.05 -23.41 16 16 C -0.16 -4.94 5.88 -20.06 -0.12 -5.06 16 17 C -0.08 -1.92 9.52 22.49 0.21 -1.71 16 18 C -0.13 -2.65 9.54 22.43 0.21 -2.44 16 19 C 0.03 0.69 5.88 -19.99 -0.12 0.58 16 20 C -0.23 -3.93 6.04 -20.33 -0.12 -4.05 16 21 C 0.07 1.13 11.42 85.53 0.98 2.11 16 22 N -0.33 -6.05 12.66 -56.41 -0.71 -6.77 16 23 N -0.46 -5.68 7.32 -56.96 -0.42 -6.10 16 24 H 0.46 2.50 8.96 -213.39 -1.91 0.58 16 25 C 0.10 1.16 11.38 83.86 0.95 2.12 16 26 C -0.13 -2.82 9.56 22.43 0.21 -2.60 16 27 C -0.06 -1.70 9.58 22.49 0.22 -1.48 16 28 C -0.16 -4.56 5.36 -10.79 -0.06 -4.62 16 29 C -0.16 -4.20 10.18 30.62 0.31 -3.89 16 30 C -0.18 -5.02 9.74 30.62 0.30 -4.72 16 31 H 0.25 14.80 8.31 -92.71 -0.77 14.03 16 32 H 0.37 20.26 7.33 -92.71 -0.68 19.58 16 33 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.41 12.71 6.62 -92.71 -0.61 12.10 16 36 H 0.13 3.13 6.39 -2.91 -0.02 3.12 16 37 H 0.16 2.06 7.00 -2.91 -0.02 2.04 16 38 H 0.20 2.45 7.34 -2.91 -0.02 2.43 16 39 H 0.22 0.94 7.27 -2.91 -0.02 0.91 16 40 H 0.15 2.34 7.03 -2.91 -0.02 2.32 16 41 H 0.13 3.52 7.64 -2.91 -0.02 3.50 16 42 H 0.12 2.95 8.11 -2.39 -0.02 2.93 16 43 H 0.08 2.30 8.05 -2.39 -0.02 2.28 16 44 H 0.12 2.36 8.14 -2.39 -0.02 2.34 16 45 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16 46 H 0.09 3.10 5.02 -2.39 -0.01 3.09 16 Total: -1.00 -74.95 384.84 0.64 -74.31 By element: Atomic # 1 Polarization: 48.21 SS G_CDS: -2.15 Total: 46.06 kcal Atomic # 6 Polarization: -14.51 SS G_CDS: 5.52 Total: -8.99 kcal Atomic # 7 Polarization: -130.52 SS G_CDS: -4.70 Total: -135.22 kcal Atomic # 8 Polarization: -23.36 SS G_CDS: -0.05 Total: -23.41 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Total: -74.95 0.64 -74.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269125607.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.466 kcal (2) G-P(sol) polarization free energy of solvation -74.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.310 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds