Wall clock time and date at job start Sat Apr 11 2020 06:05:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 119.99885 * 2 1 4 4 H 1.48505 * 109.46888 * 269.99950 * 3 2 1 5 5 H 1.48495 * 109.47080 * 30.00150 * 3 2 1 6 6 H 1.48503 * 109.46966 * 150.00108 * 3 2 1 7 7 C 1.38811 * 120.00073 * 180.02562 * 2 1 3 8 8 H 1.08009 * 120.00152 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00350 * 359.97438 * 7 2 1 10 10 C 1.46501 * 120.00165 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.46881 * 180.02562 * 10 9 7 12 12 H 1.09001 * 109.46907 * 295.00085 * 11 10 9 13 13 N 1.46501 * 109.47004 * 55.00081 * 11 10 9 14 14 C 1.34775 * 119.99973 * 204.99793 * 13 11 10 15 15 O 1.21589 * 119.99764 * 0.02562 * 14 13 11 16 16 C 1.47630 * 120.00006 * 180.02562 * 14 13 11 17 17 C 1.39755 * 120.02444 * 179.97438 * 16 14 13 18 18 C 1.37609 * 119.96903 * 180.02562 * 17 16 14 19 19 C 1.39528 * 120.03117 * 0.02562 * 18 17 16 20 20 C 1.48266 * 119.97761 * 179.97438 * 19 18 17 21 21 C 1.40945 * 126.24600 * 359.97438 * 20 19 18 22 22 N 1.30631 * 108.07273 * 180.02562 * 21 20 19 23 23 N 1.39995 * 108.56315 * 359.97438 * 22 21 20 24 24 H 0.96999 * 125.87334 * 180.02562 * 23 22 21 25 25 C 1.34709 * 108.26109 * 0.02562 * 23 22 21 26 26 C 1.39533 * 120.05020 * 0.25424 * 19 18 17 27 27 C 1.37603 * 120.02698 * 359.48921 * 26 19 18 28 28 C 1.53001 * 109.46885 * 175.00292 * 11 10 9 29 29 C 1.53003 * 117.49557 * 248.74577 * 28 11 10 30 30 C 1.52999 * 117.49750 * 180.08893 * 28 11 10 31 31 H 0.96996 * 120.00162 * 0.02562 * 1 2 3 32 32 H 0.97002 * 119.99413 * 0.02562 * 9 7 2 33 33 H 1.09003 * 109.46769 * 60.00311 * 10 9 7 34 34 H 1.08996 * 109.47337 * 300.00386 * 10 9 7 35 35 H 0.97000 * 119.99892 * 25.00089 * 13 11 10 36 36 H 1.08001 * 120.01505 * 0.02562 * 17 16 14 37 37 H 1.08003 * 119.99060 * 180.02562 * 18 17 16 38 38 H 1.08004 * 125.96126 * 359.73070 * 21 20 19 39 39 H 1.07998 * 126.20624 * 179.97438 * 25 23 22 40 40 H 1.08004 * 119.98094 * 179.74548 * 26 19 18 41 41 H 1.08002 * 120.01508 * 180.25267 * 27 26 19 42 42 H 1.08998 * 115.55104 * 34.41349 * 28 11 10 43 43 H 1.08992 * 117.49906 * 0.02562 * 29 28 11 44 44 H 1.08999 * 117.49385 * 145.02017 * 29 28 11 45 45 H 1.08994 * 117.49759 * 214.98082 * 30 28 11 46 46 H 1.08999 * 117.49875 * 359.97438 * 30 28 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6526 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0582 -3.6568 -0.0017 11 6 1.0639 -4.8198 -0.0021 12 1 0.4981 -4.8143 0.9296 13 7 0.1440 -4.6753 -1.1331 14 6 -1.0804 -5.2362 -1.0817 15 8 -1.4217 -5.8617 -0.0964 16 6 -2.0072 -5.0912 -2.2216 17 6 -3.2768 -5.6730 -2.1691 18 6 -4.1396 -5.5376 -3.2325 19 6 -3.7472 -4.8202 -4.3631 20 6 -4.6775 -4.6754 -5.5084 21 6 -5.9807 -5.2052 -5.5956 22 7 -6.4796 -4.8655 -6.7541 23 7 -5.5247 -4.1117 -7.4468 24 1 -5.6339 -3.7318 -8.3326 25 6 -4.4282 -4.0046 -6.6717 26 6 -2.4777 -4.2437 -4.4190 27 6 -1.6151 -4.3733 -3.3548 28 6 1.8248 -6.1411 -0.1289 29 6 1.6662 -6.9251 -1.4332 30 6 1.0019 -7.4308 -0.1502 31 1 -0.4850 0.8400 -0.0004 32 1 0.3556 -2.3881 -0.0005 33 1 2.6855 -3.7149 0.8879 34 1 2.6842 -3.7141 -0.8921 35 1 0.4162 -4.1761 -1.9189 36 1 -3.5806 -6.2288 -1.2943 37 1 -5.1209 -5.9867 -3.1921 38 1 -6.4780 -5.7938 -4.8388 39 1 -3.5169 -3.4829 -6.9243 40 1 -2.1736 -3.6921 -5.2964 41 1 -0.6341 -3.9236 -3.3967 42 1 2.7973 -6.1726 0.3622 43 1 1.0203 -6.4994 -2.2009 44 1 2.5344 -7.4727 -1.7998 45 1 1.4333 -8.3109 0.3267 46 1 -0.0814 -7.3380 -0.0734 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269125608.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:32 Heat of formation + Delta-G solvation = 106.249892 kcal Electronic energy + Delta-G solvation = -28513.855802 eV Core-core repulsion = 24599.269461 eV Total energy + Delta-G solvation = -3914.586341 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.53551 -40.22579 -38.57597 -36.87295 -34.88724 -33.45321 -32.71324 -31.77318 -31.30565 -30.69339 -29.01462 -27.85679 -24.33394 -23.80142 -23.24195 -22.20512 -21.56759 -21.40170 -21.15865 -20.11487 -19.58681 -18.50965 -17.74772 -17.07122 -15.99393 -15.87105 -15.44600 -15.13614 -15.00747 -14.86917 -14.52751 -14.33891 -14.21161 -13.59216 -13.54520 -13.36512 -13.23927 -12.98678 -12.91502 -12.52454 -12.18261 -12.01826 -11.60001 -11.32907 -11.18505 -11.10930 -10.93743 -10.88920 -10.83479 -10.21421 -10.10516 -10.08279 -9.86064 -9.79320 -9.59112 -9.52171 -8.99899 -8.92317 -8.62349 -8.00500 -6.96694 -5.78313 -3.08383 0.65532 1.41995 1.60984 2.42908 2.50285 3.25269 3.41022 3.46677 3.48037 3.48937 4.04732 4.10764 4.30647 4.47682 4.55360 4.72334 4.88010 4.92581 4.96300 5.10827 5.14434 5.22585 5.24638 5.25972 5.34715 5.53780 5.59681 5.66810 5.75495 5.84142 5.88495 5.98252 6.03331 6.05550 6.11881 6.25562 6.35028 6.37508 6.43659 6.47811 6.50613 6.57476 6.70691 6.83996 6.86054 6.97196 7.25744 7.67461 7.87931 8.39125 8.54776 9.51038 10.06929 10.42488 11.43718 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.008691 B = 0.003107 C = 0.002441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3221.089591 B = 9009.905218 C =11469.965772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.011 4.011 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.242 4.242 8 H 0.070 0.930 9 N -0.732 5.732 10 C 0.148 3.852 11 C 0.168 3.832 12 H 0.092 0.908 13 N -0.703 5.703 14 C 0.560 3.440 15 O -0.542 6.542 16 C -0.137 4.137 17 C -0.052 4.052 18 C -0.130 4.130 19 C 0.025 3.975 20 C -0.203 4.203 21 C 0.070 3.930 22 N -0.296 5.296 23 N -0.473 5.473 24 H 0.442 0.558 25 C 0.079 3.921 26 C -0.130 4.130 27 C -0.070 4.070 28 C -0.160 4.160 29 C -0.178 4.178 30 C -0.187 4.187 31 H 0.255 0.745 32 H 0.386 0.614 33 H 0.034 0.966 34 H 0.026 0.974 35 H 0.403 0.597 36 H 0.136 0.864 37 H 0.127 0.873 38 H 0.188 0.812 39 H 0.183 0.817 40 H 0.125 0.875 41 H 0.129 0.871 42 H 0.109 0.891 43 H 0.091 0.909 44 H 0.086 0.914 45 H 0.083 0.917 46 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.700 -13.280 -13.814 20.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.208 4.208 3 Si 0.738 3.262 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.374 4.374 8 H 0.088 0.912 9 N -0.377 5.377 10 C 0.020 3.980 11 C 0.063 3.937 12 H 0.110 0.890 13 N -0.354 5.354 14 C 0.348 3.652 15 O -0.422 6.422 16 C -0.140 4.140 17 C -0.071 4.071 18 C -0.148 4.148 19 C 0.023 3.977 20 C -0.214 4.214 21 C -0.117 4.117 22 N -0.118 5.118 23 N -0.180 5.180 24 H 0.286 0.714 25 C -0.070 4.070 26 C -0.148 4.148 27 C -0.089 4.089 28 C -0.180 4.180 29 C -0.215 4.215 30 C -0.223 4.223 31 H 0.065 0.935 32 H 0.220 0.780 33 H 0.052 0.948 34 H 0.044 0.956 35 H 0.240 0.760 36 H 0.154 0.846 37 H 0.145 0.855 38 H 0.205 0.795 39 H 0.200 0.800 40 H 0.143 0.857 41 H 0.147 0.853 42 H 0.127 0.873 43 H 0.110 0.890 44 H 0.104 0.896 45 H 0.102 0.898 46 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -7.811 -13.655 -13.865 20.969 hybrid contribution 1.118 1.622 -0.286 1.990 sum -6.694 -12.033 -14.151 19.745 Atomic orbital electron populations 1.69667 1.05057 1.25666 1.57349 1.24746 0.95494 0.97658 1.02876 0.86204 0.78677 0.83907 0.77448 1.21767 1.21797 1.20782 1.19201 0.91003 0.84038 1.43111 0.91161 1.42357 1.06026 0.99704 1.89576 1.20917 0.93052 0.85124 0.98957 1.20765 0.90145 0.92810 0.89939 0.89013 1.45901 1.14420 1.54208 1.20844 1.18183 0.81556 0.78815 0.86679 1.90682 1.76223 1.41975 1.33301 1.19993 0.95977 1.02905 0.95171 1.21143 0.91703 0.96122 0.98083 1.20982 1.00008 1.00788 0.93051 1.18190 0.92149 0.95538 0.91793 1.18987 0.96385 1.09690 0.96323 1.24051 0.93564 0.98918 0.95177 1.77232 1.13878 1.13186 1.07468 1.46217 1.11115 1.43174 1.17454 0.71436 1.22725 0.92877 0.99635 0.91731 1.20953 0.93272 1.01421 0.99152 1.21261 0.99704 0.95696 0.92259 1.22694 1.00758 0.92528 1.02017 1.22884 1.02912 1.04035 0.91657 1.23336 1.01625 0.96684 1.00697 0.93493 0.77952 0.94784 0.95637 0.76022 0.84639 0.85530 0.79531 0.80036 0.85742 0.85286 0.87302 0.89013 0.89584 0.89808 0.86500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.66 13.06 55.49 0.72 -26.94 16 2 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 3 Si 0.91 22.01 29.55 -169.99 -5.02 16.99 16 4 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.24 -6.59 9.99 -15.06 -0.15 -6.74 16 8 H 0.07 1.85 7.83 -52.48 -0.41 1.44 16 9 N -0.73 -17.85 5.43 -59.90 -0.33 -18.18 16 10 C 0.15 2.84 5.80 -4.04 -0.02 2.81 16 11 C 0.17 2.83 2.59 -67.93 -0.18 2.66 16 12 H 0.09 1.77 7.58 -51.93 -0.39 1.37 16 13 N -0.70 -11.22 3.00 -54.81 -0.16 -11.39 16 14 C 0.56 9.26 6.60 -12.43 -0.08 9.18 16 15 O -0.54 -10.24 13.36 5.29 0.07 -10.17 16 16 C -0.14 -1.96 5.88 -104.93 -0.62 -2.58 16 17 C -0.05 -0.67 9.58 -39.24 -0.38 -1.04 16 18 C -0.13 -1.41 9.56 -39.33 -0.38 -1.79 16 19 C 0.02 0.27 5.88 -104.81 -0.62 -0.35 16 20 C -0.20 -1.94 6.04 -105.35 -0.64 -2.57 16 21 C 0.07 0.66 11.42 -17.04 -0.19 0.46 16 22 N -0.30 -2.98 12.66 30.82 0.39 -2.58 16 23 N -0.47 -3.48 7.32 30.64 0.22 -3.26 16 24 H 0.44 1.77 8.96 -182.68 -1.64 0.14 16 25 C 0.08 0.59 11.38 -16.89 -0.19 0.40 16 26 C -0.13 -1.41 9.54 -39.33 -0.38 -1.78 16 27 C -0.07 -0.89 9.52 -39.25 -0.37 -1.26 16 28 C -0.16 -2.28 5.71 -90.62 -0.52 -2.80 16 29 C -0.18 -2.30 9.74 -26.69 -0.26 -2.56 16 30 C -0.19 -2.61 9.82 -26.69 -0.26 -2.87 16 31 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 32 H 0.39 10.12 7.33 -40.82 -0.30 9.82 16 33 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.40 6.13 6.62 -40.82 -0.27 5.86 16 36 H 0.14 1.73 7.64 -52.49 -0.40 1.33 16 37 H 0.13 1.05 7.03 -52.48 -0.37 0.68 16 38 H 0.19 1.26 7.34 -52.48 -0.38 0.88 16 39 H 0.18 0.80 7.27 -52.49 -0.38 0.42 16 40 H 0.12 1.03 7.00 -52.48 -0.37 0.66 16 41 H 0.13 1.52 6.39 -52.49 -0.34 1.18 16 42 H 0.11 1.43 8.11 -51.93 -0.42 1.01 16 43 H 0.09 1.21 6.67 -51.93 -0.35 0.87 16 44 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 45 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 46 H 0.12 1.90 5.01 -51.93 -0.26 1.64 16 LS Contribution 381.93 15.07 5.76 5.76 Total: -1.00 -34.11 381.93 -10.78 -44.88 By element: Atomic # 1 Polarization: 23.25 SS G_CDS: -7.10 Total: 16.15 kcal Atomic # 6 Polarization: -5.93 SS G_CDS: -5.32 Total: -11.25 kcal Atomic # 7 Polarization: -63.20 SS G_CDS: 0.85 Total: -62.35 kcal Atomic # 8 Polarization: -10.24 SS G_CDS: 0.07 Total: -10.17 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.11 -10.78 -44.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269125608.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.132 kcal (2) G-P(sol) polarization free energy of solvation -34.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.882 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds