Wall clock time and date at job start Sat Apr 11 2020 06:05:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 119.99885 * 2 1 4 4 H 1.48505 * 109.46888 * 269.99950 * 3 2 1 5 5 H 1.48495 * 109.47080 * 30.00150 * 3 2 1 6 6 H 1.48503 * 109.46966 * 150.00108 * 3 2 1 7 7 C 1.38811 * 120.00073 * 180.02562 * 2 1 3 8 8 H 1.08009 * 120.00152 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00350 * 359.97438 * 7 2 1 10 10 C 1.46501 * 120.00165 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.46881 * 180.02562 * 10 9 7 12 12 H 1.09001 * 109.46907 * 295.00085 * 11 10 9 13 13 N 1.46501 * 109.47004 * 55.00081 * 11 10 9 14 14 C 1.34775 * 119.99973 * 204.99793 * 13 11 10 15 15 O 1.21589 * 119.99764 * 0.02562 * 14 13 11 16 16 C 1.47630 * 120.00006 * 180.02562 * 14 13 11 17 17 C 1.39755 * 120.02444 * 179.97438 * 16 14 13 18 18 C 1.37609 * 119.96903 * 180.02562 * 17 16 14 19 19 C 1.39528 * 120.03117 * 0.02562 * 18 17 16 20 20 C 1.48266 * 119.97761 * 179.97438 * 19 18 17 21 21 C 1.40945 * 126.24600 * 359.97438 * 20 19 18 22 22 N 1.30631 * 108.07273 * 180.02562 * 21 20 19 23 23 N 1.39995 * 108.56315 * 359.97438 * 22 21 20 24 24 H 0.96999 * 125.87334 * 180.02562 * 23 22 21 25 25 C 1.34709 * 108.26109 * 0.02562 * 23 22 21 26 26 C 1.39533 * 120.05020 * 0.25424 * 19 18 17 27 27 C 1.37603 * 120.02698 * 359.48921 * 26 19 18 28 28 C 1.53001 * 109.46885 * 175.00292 * 11 10 9 29 29 C 1.53003 * 117.49557 * 248.74577 * 28 11 10 30 30 C 1.52999 * 117.49750 * 180.08893 * 28 11 10 31 31 H 0.96996 * 120.00162 * 0.02562 * 1 2 3 32 32 H 0.97002 * 119.99413 * 0.02562 * 9 7 2 33 33 H 1.09003 * 109.46769 * 60.00311 * 10 9 7 34 34 H 1.08996 * 109.47337 * 300.00386 * 10 9 7 35 35 H 0.97000 * 119.99892 * 25.00089 * 13 11 10 36 36 H 1.08001 * 120.01505 * 0.02562 * 17 16 14 37 37 H 1.08003 * 119.99060 * 180.02562 * 18 17 16 38 38 H 1.08004 * 125.96126 * 359.73070 * 21 20 19 39 39 H 1.07998 * 126.20624 * 179.97438 * 25 23 22 40 40 H 1.08004 * 119.98094 * 179.74548 * 26 19 18 41 41 H 1.08002 * 120.01508 * 180.25267 * 27 26 19 42 42 H 1.08998 * 115.55104 * 34.41349 * 28 11 10 43 43 H 1.08992 * 117.49906 * 0.02562 * 29 28 11 44 44 H 1.08999 * 117.49385 * 145.02017 * 29 28 11 45 45 H 1.08994 * 117.49759 * 214.98082 * 30 28 11 46 46 H 1.08999 * 117.49875 * 359.97438 * 30 28 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6526 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0582 -3.6568 -0.0017 11 6 1.0639 -4.8198 -0.0021 12 1 0.4981 -4.8143 0.9296 13 7 0.1440 -4.6753 -1.1331 14 6 -1.0804 -5.2362 -1.0817 15 8 -1.4217 -5.8617 -0.0964 16 6 -2.0072 -5.0912 -2.2216 17 6 -3.2768 -5.6730 -2.1691 18 6 -4.1396 -5.5376 -3.2325 19 6 -3.7472 -4.8202 -4.3631 20 6 -4.6775 -4.6754 -5.5084 21 6 -5.9807 -5.2052 -5.5956 22 7 -6.4796 -4.8655 -6.7541 23 7 -5.5247 -4.1117 -7.4468 24 1 -5.6339 -3.7318 -8.3326 25 6 -4.4282 -4.0046 -6.6717 26 6 -2.4777 -4.2437 -4.4190 27 6 -1.6151 -4.3733 -3.3548 28 6 1.8248 -6.1411 -0.1289 29 6 1.6662 -6.9251 -1.4332 30 6 1.0019 -7.4308 -0.1502 31 1 -0.4850 0.8400 -0.0004 32 1 0.3556 -2.3881 -0.0005 33 1 2.6855 -3.7149 0.8879 34 1 2.6842 -3.7141 -0.8921 35 1 0.4162 -4.1761 -1.9189 36 1 -3.5806 -6.2288 -1.2943 37 1 -5.1209 -5.9867 -3.1921 38 1 -6.4780 -5.7938 -4.8388 39 1 -3.5169 -3.4829 -6.9243 40 1 -2.1736 -3.6921 -5.2964 41 1 -0.6341 -3.9236 -3.3967 42 1 2.7973 -6.1726 0.3622 43 1 1.0203 -6.4994 -2.2009 44 1 2.5344 -7.4727 -1.7998 45 1 1.4333 -8.3109 0.3267 46 1 -0.0814 -7.3380 -0.0734 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269125608.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:31 Heat of formation + Delta-G solvation = 84.976474 kcal Electronic energy + Delta-G solvation = -28514.778287 eV Core-core repulsion = 24599.269461 eV Total energy + Delta-G solvation = -3915.508826 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.19301 -41.43164 -39.57476 -38.12827 -36.52948 -34.89798 -33.72126 -32.92495 -32.47954 -31.72301 -30.16151 -29.14767 -26.01466 -24.96382 -24.06558 -23.44583 -22.96122 -22.25660 -22.11947 -21.04123 -20.78163 -19.42859 -19.10849 -18.56111 -17.26099 -17.20015 -16.64815 -16.27719 -15.98051 -15.70029 -15.64938 -15.43275 -15.22572 -15.14019 -15.01025 -14.50948 -14.45689 -14.31030 -13.71941 -13.66188 -13.43239 -13.11207 -13.06667 -12.81082 -12.67452 -12.63915 -12.28382 -12.07555 -11.92503 -11.81749 -11.70127 -11.26526 -10.97381 -10.87287 -10.81353 -10.74515 -10.64151 -9.94404 -9.90859 -8.99113 -8.80309 -7.91379 -5.21357 -0.26263 0.51498 0.95640 1.49785 1.51373 1.57629 1.59694 1.98984 2.17919 2.26878 2.57688 2.97842 3.08324 3.42617 3.59119 3.64271 3.80762 3.85377 4.01505 4.03093 4.11249 4.12398 4.20841 4.27184 4.43450 4.45301 4.49927 4.52069 4.59081 4.65865 4.82643 4.85733 4.91225 4.94595 5.07751 5.12901 5.16622 5.28403 5.33901 5.41921 5.47096 5.52900 5.58930 5.61679 5.63288 5.98158 6.28453 6.35940 6.60740 6.63859 7.27655 7.36029 8.09001 8.33427 9.31361 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.008691 B = 0.003107 C = 0.002441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3221.089591 B = 9009.905218 C =11469.965772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.073 4.073 3 Si 0.972 3.028 4 H -0.284 1.284 5 H -0.300 1.300 6 H -0.271 1.271 7 C -0.243 4.243 8 H 0.079 0.921 9 N -0.743 5.743 10 C 0.151 3.849 11 C 0.177 3.823 12 H 0.060 0.940 13 N -0.699 5.699 14 C 0.556 3.444 15 O -0.575 6.575 16 C -0.165 4.165 17 C -0.063 4.063 18 C -0.132 4.132 19 C 0.035 3.965 20 C -0.232 4.232 21 C 0.066 3.934 22 N -0.328 5.328 23 N -0.464 5.464 24 H 0.455 0.545 25 C 0.098 3.902 26 C -0.131 4.131 27 C -0.076 4.076 28 C -0.165 4.165 29 C -0.161 4.161 30 C -0.191 4.191 31 H 0.249 0.751 32 H 0.374 0.626 33 H 0.038 0.962 34 H 0.042 0.958 35 H 0.407 0.593 36 H 0.127 0.873 37 H 0.151 0.849 38 H 0.203 0.797 39 H 0.217 0.783 40 H 0.155 0.845 41 H 0.132 0.868 42 H 0.126 0.874 43 H 0.086 0.914 44 H 0.111 0.889 45 H 0.102 0.898 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.606 -13.283 -16.087 21.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.265 4.265 3 Si 0.802 3.198 4 H -0.211 1.211 5 H -0.227 1.227 6 H -0.196 1.196 7 C -0.374 4.374 8 H 0.097 0.903 9 N -0.386 5.386 10 C 0.024 3.976 11 C 0.072 3.928 12 H 0.078 0.922 13 N -0.350 5.350 14 C 0.346 3.654 15 O -0.457 6.457 16 C -0.168 4.168 17 C -0.082 4.082 18 C -0.150 4.150 19 C 0.034 3.966 20 C -0.243 4.243 21 C -0.121 4.121 22 N -0.150 5.150 23 N -0.172 5.172 24 H 0.302 0.698 25 C -0.052 4.052 26 C -0.149 4.149 27 C -0.095 4.095 28 C -0.185 4.185 29 C -0.198 4.198 30 C -0.227 4.227 31 H 0.058 0.942 32 H 0.206 0.794 33 H 0.056 0.944 34 H 0.060 0.940 35 H 0.244 0.756 36 H 0.145 0.855 37 H 0.168 0.832 38 H 0.220 0.780 39 H 0.233 0.767 40 H 0.173 0.827 41 H 0.150 0.850 42 H 0.144 0.856 43 H 0.105 0.895 44 H 0.129 0.871 45 H 0.121 0.879 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -6.686 -13.683 -16.173 22.215 hybrid contribution 0.727 1.580 0.337 1.772 sum -5.958 -12.102 -15.836 20.803 Atomic orbital electron populations 1.69836 1.06614 1.25908 1.59375 1.25539 0.96278 1.00991 1.03709 0.85158 0.77589 0.79597 0.77477 1.21101 1.22747 1.19592 1.19614 0.91554 0.85038 1.41220 0.90302 1.42528 1.05642 1.00910 1.89514 1.21034 0.93312 0.83798 0.99480 1.20513 0.89602 0.93553 0.89102 0.92168 1.45827 1.14362 1.54199 1.20574 1.18595 0.81730 0.78092 0.86996 1.90655 1.76799 1.43498 1.34747 1.19932 0.96295 1.05324 0.95296 1.21191 0.91819 0.96464 0.98705 1.21234 1.00625 1.00670 0.92458 1.18373 0.92236 0.94162 0.91872 1.19029 0.96571 1.11779 0.96927 1.24394 0.93658 0.98682 0.95344 1.77199 1.15185 1.14499 1.08107 1.46294 1.10619 1.42307 1.17969 0.69754 1.23253 0.93502 0.97833 0.90640 1.21274 0.92915 1.01237 0.99505 1.21358 1.00315 0.95542 0.92269 1.22617 1.01065 0.91046 1.03767 1.22952 1.03201 1.02860 0.90797 1.23276 1.00310 0.97134 1.02027 0.94178 0.79403 0.94434 0.94045 0.75565 0.85474 0.83161 0.78009 0.76702 0.82717 0.84980 0.85615 0.89515 0.87112 0.87935 0.89016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.54 13.06 21.65 0.28 -58.26 16 2 C -0.07 -4.09 5.50 84.86 0.47 -3.62 16 3 Si 0.97 45.22 29.55 68.60 2.03 47.25 16 4 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 5 H -0.30 -14.30 7.11 99.48 0.71 -13.59 16 6 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 7 C -0.24 -13.10 9.99 84.03 0.84 -12.26 16 8 H 0.08 4.05 7.83 -2.91 -0.02 4.03 16 9 N -0.74 -36.60 5.43 -343.44 -1.87 -38.46 16 10 C 0.15 5.74 5.80 86.38 0.50 6.25 16 11 C 0.18 6.09 2.59 44.99 0.12 6.21 16 12 H 0.06 2.45 7.58 -2.39 -0.02 2.43 16 13 N -0.70 -22.99 3.00 -445.59 -1.34 -24.33 16 14 C 0.56 19.36 6.60 86.72 0.57 19.93 16 15 O -0.57 -23.17 13.36 -4.00 -0.05 -23.22 16 16 C -0.17 -4.90 5.88 -20.06 -0.12 -5.02 16 17 C -0.06 -1.68 9.58 22.49 0.22 -1.47 16 18 C -0.13 -2.79 9.56 22.43 0.21 -2.58 16 19 C 0.04 0.70 5.88 -19.99 -0.12 0.58 16 20 C -0.23 -3.90 6.04 -20.33 -0.12 -4.03 16 21 C 0.07 1.12 11.42 85.53 0.98 2.10 16 22 N -0.33 -6.03 12.66 -56.41 -0.71 -6.75 16 23 N -0.46 -5.64 7.32 -56.96 -0.42 -6.06 16 24 H 0.46 2.47 8.96 -213.39 -1.91 0.56 16 25 C 0.10 1.15 11.38 83.86 0.95 2.11 16 26 C -0.13 -2.61 9.54 22.43 0.21 -2.40 16 27 C -0.08 -1.89 9.52 22.49 0.21 -1.68 16 28 C -0.17 -4.58 5.71 -10.79 -0.06 -4.64 16 29 C -0.16 -3.92 9.74 30.62 0.30 -3.62 16 30 C -0.19 -5.25 9.82 30.62 0.30 -4.95 16 31 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 32 H 0.37 20.16 7.33 -92.71 -0.68 19.48 16 33 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.41 12.58 6.62 -92.71 -0.61 11.97 16 36 H 0.13 3.50 7.64 -2.91 -0.02 3.48 16 37 H 0.15 2.33 7.03 -2.91 -0.02 2.31 16 38 H 0.20 2.44 7.34 -2.91 -0.02 2.42 16 39 H 0.22 0.92 7.27 -2.91 -0.02 0.90 16 40 H 0.16 2.03 7.00 -2.91 -0.02 2.01 16 41 H 0.13 3.09 6.39 -2.91 -0.02 3.07 16 42 H 0.13 3.06 8.11 -2.39 -0.02 3.04 16 43 H 0.09 2.22 6.67 -2.39 -0.02 2.20 16 44 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 45 H 0.10 2.41 8.14 -2.39 -0.02 2.39 16 46 H 0.09 3.08 5.01 -2.39 -0.01 3.07 16 Total: -1.00 -74.75 381.93 1.24 -73.51 By element: Atomic # 1 Polarization: 47.56 SS G_CDS: -2.15 Total: 45.41 kcal Atomic # 6 Polarization: -14.56 SS G_CDS: 5.46 Total: -9.09 kcal Atomic # 7 Polarization: -129.81 SS G_CDS: -4.05 Total: -133.86 kcal Atomic # 8 Polarization: -23.17 SS G_CDS: -0.05 Total: -23.22 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Total: -74.75 1.24 -73.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269125608.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.491 kcal (2) G-P(sol) polarization free energy of solvation -74.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.514 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds