Wall clock time and date at job start Sat Apr 11 2020 06:05:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86793 * 120.00351 * 2 1 4 4 H 1.48492 * 109.47482 * 240.27972 * 3 2 1 5 5 H 1.48501 * 109.47152 * 0.28251 * 3 2 1 6 6 H 1.48504 * 109.46954 * 120.28169 * 3 2 1 7 7 C 1.38812 * 119.99692 * 180.28622 * 2 1 3 8 8 H 1.08000 * 120.00609 * 179.72363 * 7 2 1 9 9 N 1.36944 * 119.99954 * 359.71649 * 7 2 1 10 10 C 1.46501 * 119.99877 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.46987 * 174.94284 * 10 9 7 12 12 N 1.46506 * 110.01461 * 59.05210 * 11 10 9 13 13 C 1.34772 * 120.00075 * 65.33928 * 12 11 10 14 14 O 1.21545 * 120.00047 * 354.97968 * 13 12 11 15 15 C 1.47915 * 119.99891 * 174.98390 * 13 12 11 16 16 N 1.32374 * 120.63539 * 4.94445 * 15 13 12 17 17 N 1.28092 * 123.17847 * 179.73579 * 16 15 13 18 18 C 1.31794 * 123.49653 * 0.56090 * 17 16 15 19 19 C 1.40402 * 119.14075 * 359.72713 * 18 17 16 20 20 C 1.40236 * 122.74048 * 179.97438 * 19 18 17 21 21 C 1.36249 * 119.37025 * 180.02562 * 20 19 18 22 22 C 1.39376 * 121.07592 * 0.03970 * 21 20 19 23 23 C 1.36368 * 121.09092 * 0.02562 * 22 21 20 24 24 C 1.39837 * 119.41295 * 359.97432 * 23 22 21 25 25 C 1.54266 * 110.03325 * 297.60900 * 11 10 9 26 26 C 1.54889 * 104.19466 * 217.10455 * 25 11 10 27 27 C 1.54884 * 102.74976 * 37.94437 * 26 25 11 28 28 C 1.53879 * 110.03414 * 180.44122 * 11 10 9 29 29 H 0.97002 * 119.99839 * 359.71345 * 1 2 3 30 30 H 0.96992 * 120.00096 * 0.02562 * 9 7 2 31 31 H 1.08999 * 109.47034 * 294.94308 * 10 9 7 32 32 H 1.08992 * 109.47283 * 54.94249 * 10 9 7 33 33 H 0.97003 * 119.99601 * 245.32576 * 12 11 10 34 34 H 1.08001 * 120.43252 * 179.70497 * 18 17 16 35 35 H 1.08003 * 120.31350 * 0.04558 * 20 19 18 36 36 H 1.07999 * 119.46568 * 180.02562 * 21 20 19 37 37 H 1.08003 * 119.45932 * 179.97438 * 22 21 20 38 38 H 1.07995 * 120.29350 * 180.02562 * 23 22 21 39 39 H 1.09003 * 110.48561 * 335.78441 * 25 11 10 40 40 H 1.09003 * 110.48578 * 98.42876 * 25 11 10 41 41 H 1.08997 * 110.75906 * 279.62704 * 26 25 11 42 42 H 1.09005 * 110.75391 * 156.25741 * 26 25 11 43 43 H 1.09001 * 110.49022 * 203.37779 * 27 26 25 44 44 H 1.08994 * 110.48926 * 80.73288 * 27 26 25 45 45 H 1.09000 * 110.03453 * 238.57065 * 28 11 10 46 46 H 1.08999 * 110.02654 * 0.02562 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.0989 1.6993 -1.2158 5 1 1.2854 2.7464 0.0069 6 1 3.1092 1.6932 1.2091 7 6 2.0102 -1.2022 -0.0060 8 1 3.0902 -1.2023 -0.0105 9 7 1.3254 -2.3881 -0.0061 10 6 2.0579 -3.6569 -0.0118 11 6 1.0690 -4.8172 0.1165 12 7 0.1130 -4.7864 -0.9932 13 6 0.5390 -4.9899 -2.2555 14 8 1.7269 -5.1081 -2.4844 15 6 -0.4389 -5.0693 -3.3624 16 7 -1.7252 -4.8458 -3.1434 17 7 -2.6125 -4.8967 -4.0658 18 6 -2.3397 -5.1864 -5.3223 19 6 -1.0108 -5.4508 -5.6900 20 6 -0.6359 -5.7671 -7.0038 21 6 0.6747 -6.0121 -7.2841 22 6 1.6468 -5.9540 -6.2870 23 6 1.3171 -5.6508 -4.9989 24 6 -0.0185 -5.3934 -4.6743 25 6 0.3208 -4.7274 1.4626 26 6 0.1672 -6.2021 1.9108 27 6 1.5115 -6.8343 1.4727 28 6 1.8261 -6.1568 0.1229 29 1 -0.4850 0.8401 0.0042 30 1 0.3555 -2.3881 -0.0023 31 1 2.6112 -3.7527 -0.9460 32 1 2.7540 -3.6783 0.8266 33 1 -0.8267 -4.6196 -0.8194 34 1 -3.1283 -5.2202 -6.0595 35 1 -1.3791 -5.8158 -7.7859 36 1 0.9652 -6.2554 -8.2955 37 1 2.6781 -6.1533 -6.5383 38 1 2.0808 -5.6089 -4.2365 39 1 0.9089 -4.1670 2.1893 40 1 -0.6575 -4.2666 1.3253 41 1 -0.6686 -6.6770 1.3971 42 1 0.0443 -6.2663 2.9920 43 1 1.4024 -7.9110 1.3428 44 1 2.2920 -6.6142 2.2010 45 1 1.4816 -6.7844 -0.6991 46 1 2.8980 -5.9802 0.0350 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269563664.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:43 Heat of formation + Delta-G solvation = 31.683137 kcal Electronic energy + Delta-G solvation = -29897.857576 eV Core-core repulsion = 25980.037778 eV Total energy + Delta-G solvation = -3917.819798 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.61914 -41.26604 -39.09220 -38.88925 -36.18148 -34.82032 -34.34098 -33.02770 -32.82918 -31.42473 -29.86391 -29.54315 -26.93441 -26.17330 -25.34633 -24.13581 -23.93875 -22.46923 -21.63241 -20.51331 -19.60064 -19.18913 -19.12488 -18.43885 -17.42612 -17.04301 -16.75796 -16.48217 -16.14864 -16.01383 -15.64273 -15.54163 -15.32682 -15.05701 -15.00061 -14.60284 -14.53872 -14.09266 -13.62514 -13.56604 -13.29997 -13.22635 -12.80978 -12.75443 -12.55926 -12.54287 -12.26521 -12.20956 -11.99661 -11.93041 -11.81727 -11.75909 -11.67752 -11.41097 -11.02786 -10.84392 -10.63060 -10.41314 -10.07630 -9.53396 -8.98152 -7.95914 -5.23838 -1.12244 -0.47224 0.54699 1.42111 1.45807 1.50118 1.51936 1.90684 2.08948 2.53436 2.76872 2.88439 3.27894 3.35198 3.40040 3.49192 3.59006 3.68246 3.70697 3.88890 3.95909 4.16338 4.18558 4.23713 4.36681 4.43034 4.49587 4.52878 4.60456 4.65339 4.76144 4.79540 4.83577 4.90651 4.98021 5.06965 5.07640 5.18053 5.19915 5.23525 5.30274 5.33344 5.39257 5.44836 5.48172 5.64750 5.77292 6.24915 6.39863 7.03831 7.32046 7.57443 8.07463 8.33725 9.26965 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.008814 B = 0.004115 C = 0.003355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3175.997810 B = 6803.345715 C = 8342.705184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.966 5.966 2 C -0.072 4.072 3 Si 0.972 3.028 4 H -0.284 1.284 5 H -0.293 1.293 6 H -0.274 1.274 7 C -0.246 4.246 8 H 0.069 0.931 9 N -0.734 5.734 10 C 0.148 3.852 11 C 0.169 3.831 12 N -0.682 5.682 13 C 0.577 3.423 14 O -0.540 6.540 15 C 0.047 3.953 16 N -0.251 5.251 17 N -0.305 5.305 18 C 0.115 3.885 19 C -0.103 4.103 20 C -0.080 4.080 21 C -0.092 4.092 22 C -0.088 4.088 23 C -0.124 4.124 24 C -0.070 4.070 25 C -0.116 4.116 26 C -0.114 4.114 27 C -0.115 4.115 28 C -0.110 4.110 29 H 0.250 0.750 30 H 0.374 0.626 31 H 0.016 0.984 32 H 0.031 0.969 33 H 0.409 0.591 34 H 0.229 0.771 35 H 0.186 0.814 36 H 0.177 0.823 37 H 0.158 0.842 38 H 0.150 0.850 39 H 0.074 0.926 40 H 0.063 0.937 41 H 0.071 0.929 42 H 0.087 0.913 43 H 0.084 0.916 44 H 0.076 0.924 45 H 0.061 0.939 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.589 -19.945 -12.936 23.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.264 4.264 3 Si 0.801 3.199 4 H -0.210 1.210 5 H -0.219 1.219 6 H -0.200 1.200 7 C -0.378 4.378 8 H 0.087 0.913 9 N -0.376 5.376 10 C 0.020 3.980 11 C 0.083 3.917 12 N -0.332 5.332 13 C 0.361 3.639 14 O -0.417 6.417 15 C -0.111 4.111 16 N -0.087 5.087 17 N -0.136 5.136 18 C -0.058 4.058 19 C -0.111 4.111 20 C -0.100 4.100 21 C -0.111 4.111 22 C -0.107 4.107 23 C -0.144 4.144 24 C -0.077 4.077 25 C -0.154 4.154 26 C -0.152 4.152 27 C -0.153 4.153 28 C -0.149 4.149 29 H 0.059 0.941 30 H 0.207 0.793 31 H 0.033 0.967 32 H 0.049 0.951 33 H 0.245 0.755 34 H 0.246 0.754 35 H 0.204 0.796 36 H 0.194 0.806 37 H 0.176 0.824 38 H 0.167 0.833 39 H 0.093 0.907 40 H 0.082 0.918 41 H 0.090 0.910 42 H 0.105 0.895 43 H 0.102 0.898 44 H 0.095 0.905 45 H 0.079 0.921 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.834 -19.521 -11.833 22.900 hybrid contribution 0.712 1.310 -0.716 1.654 sum -1.122 -18.211 -12.549 22.144 Atomic orbital electron populations 1.69818 1.06465 1.25995 1.59398 1.25511 0.96385 1.00849 1.03703 0.85240 0.77258 0.79341 0.78104 1.21026 1.21875 1.19997 1.19557 0.91269 0.85565 1.41407 0.91318 1.42349 1.05436 1.00600 1.89246 1.21221 0.93821 0.85030 0.97910 1.21382 0.89072 0.95220 0.86024 1.45982 1.12401 1.69443 1.05352 1.17624 0.86857 0.76850 0.82578 1.90569 1.16402 1.51671 1.83102 1.23028 0.93774 0.99695 0.94643 1.72624 0.99201 1.09162 1.27703 1.72545 1.26548 1.13761 1.00767 1.25569 0.96333 0.88684 0.95218 1.19272 0.93741 1.01875 0.96162 1.21491 0.98542 0.96526 0.93420 1.21659 0.92268 0.95908 1.01274 1.21666 1.02207 0.95161 0.91709 1.21924 0.94970 0.97745 0.99746 1.18857 0.96803 0.99760 0.92299 1.22541 0.99918 0.98800 0.94159 1.22504 0.97821 0.92983 1.01867 1.22372 0.97547 1.00108 0.95252 1.22348 1.00035 0.93544 0.99006 0.94081 0.79332 0.96650 0.95065 0.75488 0.75436 0.79632 0.80588 0.82438 0.83257 0.90699 0.91817 0.91026 0.89452 0.89787 0.90503 0.92066 0.91418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.57 13.06 21.65 0.28 -61.29 16 2 C -0.07 -4.35 5.50 84.86 0.47 -3.88 16 3 Si 0.97 48.45 29.55 68.60 2.03 50.48 16 4 H -0.28 -13.85 7.11 99.48 0.71 -13.14 16 5 H -0.29 -14.54 7.11 99.48 0.71 -13.83 16 6 H -0.27 -13.02 7.11 99.48 0.71 -12.31 16 7 C -0.25 -14.67 9.99 84.03 0.84 -13.83 16 8 H 0.07 3.99 7.83 -2.91 -0.02 3.97 16 9 N -0.73 -39.86 5.24 -343.46 -1.80 -41.66 16 10 C 0.15 6.65 4.67 86.38 0.40 7.05 16 11 C 0.17 5.99 0.56 4.33 0.00 5.99 16 12 N -0.68 -25.31 4.68 -422.40 -1.98 -27.29 16 13 C 0.58 22.45 6.83 86.81 0.59 23.04 16 14 O -0.54 -22.12 10.81 -3.86 -0.04 -22.16 16 15 C 0.05 1.70 6.90 42.44 0.29 1.99 16 16 N -0.25 -9.18 10.70 -47.73 -0.51 -9.69 16 17 N -0.30 -9.62 11.41 -56.16 -0.64 -10.26 16 18 C 0.12 2.51 11.20 85.23 0.95 3.46 16 19 C -0.10 -2.31 5.75 -21.31 -0.12 -2.44 16 20 C -0.08 -1.03 9.84 22.29 0.22 -0.81 16 21 C -0.09 -1.09 9.95 22.08 0.22 -0.87 16 22 C -0.09 -1.57 9.95 22.11 0.22 -1.35 16 23 C -0.12 -3.43 9.27 22.22 0.21 -3.22 16 24 C -0.07 -2.13 5.77 -21.12 -0.12 -2.25 16 25 C -0.12 -3.69 5.55 31.67 0.18 -3.51 16 26 C -0.11 -2.66 6.91 31.88 0.22 -2.44 16 27 C -0.12 -2.59 6.83 31.67 0.22 -2.38 16 28 C -0.11 -3.28 5.21 31.32 0.16 -3.12 16 29 H 0.25 15.50 8.31 -92.71 -0.77 14.73 16 30 H 0.37 21.37 7.20 -92.71 -0.67 20.70 16 31 H 0.02 0.78 6.46 -2.39 -0.02 0.76 16 32 H 0.03 1.39 8.12 -2.39 -0.02 1.37 16 33 H 0.41 14.96 7.62 -92.71 -0.71 14.25 16 34 H 0.23 2.30 8.06 -2.91 -0.02 2.27 16 35 H 0.19 0.64 8.06 -2.91 -0.02 0.61 16 36 H 0.18 0.60 8.06 -2.91 -0.02 0.57 16 37 H 0.16 1.93 8.06 -2.91 -0.02 1.91 16 38 H 0.15 4.84 5.12 -2.91 -0.01 4.82 16 39 H 0.07 2.57 7.84 -2.39 -0.02 2.55 16 40 H 0.06 2.14 7.70 -2.39 -0.02 2.12 16 41 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 42 H 0.09 1.72 8.14 -2.38 -0.02 1.70 16 43 H 0.08 1.56 8.14 -2.39 -0.02 1.55 16 44 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 45 H 0.06 1.88 6.98 -2.39 -0.02 1.86 16 46 H 0.07 2.09 7.67 -2.39 -0.02 2.07 16 Total: -1.00 -80.68 373.10 1.95 -78.74 By element: Atomic # 1 Polarization: 42.03 SS G_CDS: -0.34 Total: 41.69 kcal Atomic # 6 Polarization: -3.49 SS G_CDS: 4.95 Total: 1.46 kcal Atomic # 7 Polarization: -145.55 SS G_CDS: -4.65 Total: -150.20 kcal Atomic # 8 Polarization: -22.12 SS G_CDS: -0.04 Total: -22.16 kcal Atomic # 14 Polarization: 48.45 SS G_CDS: 2.03 Total: 50.48 kcal Total: -80.68 1.95 -78.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269563664.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.420 kcal (2) G-P(sol) polarization free energy of solvation -80.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.737 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds