Wall clock time and date at job start Sat Apr 11 2020 06:06:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86808 * 119.99629 * 2 1 4 4 H 1.48495 * 109.47377 * 239.99647 * 3 2 1 5 5 H 1.48498 * 109.47151 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46955 * 119.99748 * 3 2 1 7 7 C 1.38807 * 120.00401 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99963 * 190.85996 * 7 2 1 9 9 N 1.36933 * 120.00263 * 10.86214 * 7 2 1 10 10 C 1.46683 * 121.32937 * 28.05563 * 9 7 2 11 11 C 1.50807 * 109.69100 * 135.70030 * 10 9 7 12 12 C 1.38836 * 117.81751 * 191.36123 * 11 10 9 13 13 C 1.37954 * 120.50636 * 180.46941 * 12 11 10 14 14 C 1.38266 * 119.72425 * 0.07999 * 13 12 11 15 15 C 1.37910 * 119.82149 * 359.75839 * 14 13 12 16 16 C 1.37672 * 122.34100 * 11.45529 * 11 10 9 17 17 C 1.50602 * 122.85904 * 358.57194 * 16 11 10 18 18 C 1.47235 * 121.33171 * 208.08466 * 9 7 2 19 19 H 1.09000 * 109.77433 * 124.59892 * 18 9 7 20 20 C 1.52997 * 109.77713 * 3.80149 * 18 9 7 21 21 N 1.46500 * 109.47258 * 54.99614 * 20 18 9 22 22 C 1.34776 * 119.99862 * 180.02562 * 21 20 18 23 23 O 1.21280 * 120.00344 * 359.97438 * 22 21 20 24 24 C 1.50709 * 119.99752 * 180.02562 * 22 21 20 25 25 N 1.46502 * 109.46936 * 179.97438 * 24 22 21 26 26 C 1.34945 * 126.03404 * 124.99731 * 25 24 22 27 27 C 1.35319 * 107.74666 * 179.97438 * 26 25 24 28 28 C 1.39874 * 107.91576 * 0.02562 * 27 26 25 29 29 N 1.30832 * 108.20318 * 359.73889 * 28 27 26 30 30 H 0.96998 * 120.00694 * 0.02562 * 1 2 3 31 31 H 1.08997 * 109.43614 * 255.77283 * 10 9 7 32 32 H 1.09003 * 109.42829 * 15.68130 * 10 9 7 33 33 H 1.07999 * 119.74457 * 0.48708 * 12 11 10 34 34 H 1.08001 * 120.13731 * 180.02562 * 13 12 11 35 35 H 1.08000 * 120.08861 * 179.77621 * 14 13 12 36 36 H 1.07995 * 119.70990 * 179.97438 * 15 14 13 37 37 H 1.08997 * 109.19949 * 259.87425 * 17 16 11 38 38 H 1.09005 * 109.20602 * 140.57957 * 17 16 11 39 39 H 1.08995 * 109.47595 * 174.99800 * 20 18 9 40 40 H 1.09006 * 109.46813 * 294.99768 * 20 18 9 41 41 H 0.97003 * 120.00153 * 0.02562 * 21 20 18 42 42 H 1.08996 * 109.46924 * 299.99684 * 24 22 21 43 43 H 1.08993 * 109.46908 * 60.00030 * 24 22 21 44 44 H 1.07993 * 126.13034 * 359.96454 * 26 25 24 45 45 H 1.07994 * 126.04618 * 180.02562 * 27 26 25 46 46 H 1.08007 * 125.89585 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 3.1039 1.6966 -1.2124 5 1 1.2850 2.7465 0.0006 6 1 3.1038 1.6966 1.2126 7 6 2.0102 -1.2021 0.0005 8 1 3.0757 -1.2103 0.1768 9 7 1.3441 -2.3775 -0.2224 10 6 0.1202 -2.4193 -1.0298 11 6 0.1768 -3.5905 -1.9781 12 6 -0.7768 -3.6553 -2.9852 13 6 -0.7825 -4.7074 -3.8774 14 6 0.1678 -5.7056 -3.7665 15 6 1.1175 -5.6405 -2.7686 16 6 1.1295 -4.5786 -1.8721 17 6 2.2120 -4.5610 -0.8253 18 6 1.8274 -3.6498 0.3392 19 1 1.0376 -4.1168 0.9277 20 6 3.0502 -3.3945 1.2226 21 7 2.7155 -2.3991 2.2441 22 6 3.6454 -2.0147 3.1407 23 8 4.7593 -2.4930 3.1021 24 6 3.3009 -0.9912 4.1919 25 7 4.4719 -0.7466 5.0376 26 6 5.0391 0.4535 5.2803 27 6 6.0919 0.2527 6.1064 28 6 6.1710 -1.1173 6.3773 29 7 5.1973 -1.7166 5.7414 30 1 -0.4851 0.8400 -0.0004 31 1 -0.7437 -2.5252 -0.3737 32 1 0.0308 -1.4951 -1.6008 33 1 -1.5195 -2.8760 -3.0708 34 1 -1.5268 -4.7517 -4.6588 35 1 0.1666 -6.5338 -4.4596 36 1 1.8587 -6.4213 -2.6834 37 1 3.1377 -4.1993 -1.2729 38 1 2.3667 -5.5735 -0.4524 39 1 3.3500 -4.3243 1.7058 40 1 3.8708 -3.0231 0.6086 41 1 1.8245 -2.0168 2.2752 42 1 3.0005 -0.0614 3.7089 43 1 2.4809 -1.3631 4.8060 44 1 4.7116 1.4040 4.8859 45 1 6.7540 1.0153 6.4890 46 1 6.9060 -1.5969 7.0068 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273813240.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:00 Heat of formation + Delta-G solvation = 102.319658 kcal Electronic energy + Delta-G solvation = -29477.378033 eV Core-core repulsion = 25562.621264 eV Total energy + Delta-G solvation = -3914.756769 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.97963 -39.53476 -38.85917 -36.62776 -33.79714 -33.14147 -32.91619 -31.48689 -30.38353 -29.89698 -29.07898 -27.47531 -25.69759 -25.05485 -22.91861 -21.61942 -21.50812 -20.94754 -20.79820 -19.80760 -19.09428 -17.33305 -16.97251 -16.29306 -16.13137 -15.60250 -15.23348 -15.00587 -14.61890 -14.41328 -14.29328 -14.00007 -13.89737 -13.51423 -13.35641 -13.06041 -12.82331 -12.66181 -12.64533 -12.51083 -12.34881 -11.97791 -11.64574 -11.63902 -11.17263 -10.98791 -10.93437 -10.77297 -10.61577 -10.44886 -10.26739 -10.10012 -9.83079 -9.68051 -9.08758 -8.87615 -8.43505 -8.37638 -8.27468 -7.90506 -6.91372 -6.02100 -3.46627 1.82474 1.89987 2.06089 2.58729 3.04164 3.04414 3.17872 3.27972 3.31349 3.68131 4.24365 4.26169 4.77540 4.95703 5.04989 5.12030 5.17084 5.21204 5.22995 5.28000 5.32078 5.42782 5.52788 5.66539 5.69047 5.83442 5.88981 5.89631 5.99482 6.01861 6.13188 6.14100 6.24848 6.29436 6.50488 6.57669 6.74584 6.79703 6.90216 6.90975 7.01538 7.08101 7.10790 7.13370 7.44304 7.57945 7.61963 7.90042 8.10907 8.16872 8.72921 8.97125 9.56683 10.15948 11.06601 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014719 B = 0.003290 C = 0.002801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1901.810600 B = 8509.865511 C = 9994.131235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.007 3.993 3 Si 0.898 3.102 4 H -0.283 1.283 5 H -0.289 1.289 6 H -0.284 1.284 7 C -0.246 4.246 8 H 0.071 0.929 9 N -0.589 5.589 10 C 0.208 3.792 11 C -0.078 4.078 12 C -0.123 4.123 13 C -0.130 4.130 14 C -0.140 4.140 15 C -0.127 4.127 16 C -0.068 4.068 17 C -0.090 4.090 18 C 0.158 3.842 19 H 0.043 0.957 20 C 0.140 3.860 21 N -0.690 5.690 22 C 0.497 3.503 23 O -0.536 6.536 24 C 0.113 3.887 25 N -0.355 5.355 26 C 0.053 3.947 27 C -0.278 4.278 28 C 0.032 3.968 29 N -0.266 5.266 30 H 0.257 0.743 31 H 0.043 0.957 32 H 0.096 0.904 33 H 0.117 0.883 34 H 0.112 0.888 35 H 0.111 0.889 36 H 0.111 0.889 37 H 0.074 0.926 38 H 0.063 0.937 39 H 0.058 0.942 40 H 0.066 0.934 41 H 0.417 0.583 42 H 0.126 0.874 43 H 0.111 0.889 44 H 0.172 0.828 45 H 0.144 0.856 46 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.360 -3.499 3.485 5.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.192 4.192 3 Si 0.728 3.272 4 H -0.209 1.209 5 H -0.215 1.215 6 H -0.210 1.210 7 C -0.375 4.375 8 H 0.088 0.912 9 N -0.312 5.312 10 C 0.083 3.917 11 C -0.080 4.080 12 C -0.142 4.142 13 C -0.148 4.148 14 C -0.158 4.158 15 C -0.145 4.145 16 C -0.068 4.068 17 C -0.130 4.130 18 C 0.051 3.949 19 H 0.061 0.939 20 C 0.015 3.985 21 N -0.343 5.343 22 C 0.280 3.720 23 O -0.413 6.413 24 C -0.013 4.013 25 N -0.137 5.137 26 C -0.093 4.093 27 C -0.307 4.307 28 C -0.155 4.155 29 N -0.087 5.087 30 H 0.067 0.933 31 H 0.060 0.940 32 H 0.114 0.886 33 H 0.135 0.865 34 H 0.130 0.870 35 H 0.129 0.871 36 H 0.129 0.871 37 H 0.092 0.908 38 H 0.082 0.918 39 H 0.077 0.923 40 H 0.084 0.916 41 H 0.255 0.745 42 H 0.144 0.856 43 H 0.129 0.871 44 H 0.189 0.811 45 H 0.162 0.838 46 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 1.340 -4.804 3.124 5.885 hybrid contribution 0.335 1.970 -0.239 2.012 sum 1.674 -2.834 2.886 4.377 Atomic orbital electron populations 1.69938 1.05007 1.25901 1.53980 1.25040 0.95334 0.98000 1.00810 0.86451 0.78835 0.83536 0.78393 1.20942 1.21462 1.21033 1.19081 0.91278 0.83260 1.43930 0.91157 1.44029 1.28526 1.02262 1.56412 1.19777 0.88566 0.93039 0.90326 1.21007 0.93264 0.97232 0.96473 1.21114 0.99187 0.98406 0.95488 1.20955 0.99178 0.95189 0.99506 1.20856 0.96648 0.99177 0.99111 1.21129 0.99055 0.98404 0.95959 1.19480 0.96507 0.94015 0.96815 1.20880 0.96929 0.99512 0.95679 1.20720 0.93869 0.88648 0.91649 0.93903 1.21231 0.97663 0.90559 0.89008 1.45814 1.15821 1.42792 1.29836 1.20261 0.85713 0.83378 0.82646 1.90726 1.21455 1.55946 1.73144 1.21543 0.85822 1.02032 0.91874 1.48134 1.24101 1.04711 1.36778 1.22562 0.96103 0.90748 0.99870 1.21421 1.03393 0.96967 1.08963 1.23852 0.98111 0.93425 1.00093 1.77457 1.07517 1.13842 1.09890 0.93265 0.93963 0.88591 0.86465 0.86977 0.87101 0.87070 0.90811 0.91818 0.92340 0.91587 0.74546 0.85593 0.87095 0.81130 0.83805 0.80391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.44 11.06 55.49 0.61 -21.83 16 2 C 0.01 0.17 5.08 -17.44 -0.09 0.08 16 3 Si 0.90 19.55 29.57 -169.99 -5.03 14.53 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 6 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 7 C -0.25 -5.67 6.96 -15.06 -0.10 -5.77 16 8 H 0.07 1.68 6.18 -52.49 -0.32 1.36 16 9 N -0.59 -12.49 2.85 -166.39 -0.47 -12.97 16 10 C 0.21 4.44 4.80 -5.04 -0.02 4.42 16 11 C -0.08 -1.48 5.82 -104.56 -0.61 -2.09 16 12 C -0.12 -2.09 9.62 -39.46 -0.38 -2.47 16 13 C -0.13 -1.93 10.05 -39.68 -0.40 -2.33 16 14 C -0.14 -2.01 10.04 -39.69 -0.40 -2.41 16 15 C -0.13 -1.96 9.59 -39.43 -0.38 -2.34 16 16 C -0.07 -1.19 5.76 -104.60 -0.60 -1.79 16 17 C -0.09 -1.50 5.21 -28.04 -0.15 -1.64 16 18 C 0.16 2.85 3.02 -67.64 -0.20 2.65 16 19 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 20 C 0.14 2.47 4.45 -4.04 -0.02 2.45 16 21 N -0.69 -12.14 4.01 -60.29 -0.24 -12.38 16 22 C 0.50 8.99 7.86 -10.98 -0.09 8.90 16 23 O -0.54 -11.67 15.72 5.56 0.09 -11.58 16 24 C 0.11 1.65 6.99 -5.19 -0.04 1.62 16 25 N -0.36 -5.67 3.40 -62.55 -0.21 -5.89 16 26 C 0.05 0.72 11.45 -17.22 -0.20 0.52 16 27 C -0.28 -3.58 10.80 -40.01 -0.43 -4.01 16 28 C 0.03 0.45 12.03 -17.37 -0.21 0.25 16 29 N -0.27 -4.63 11.66 30.63 0.36 -4.27 16 30 H 0.26 6.34 8.31 -40.82 -0.34 6.00 16 31 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.10 2.31 6.46 -51.93 -0.34 1.97 16 33 H 0.12 1.86 8.05 -52.49 -0.42 1.43 16 34 H 0.11 1.37 8.06 -52.49 -0.42 0.94 16 35 H 0.11 1.30 8.06 -52.49 -0.42 0.87 16 36 H 0.11 1.46 8.05 -52.49 -0.42 1.04 16 37 H 0.07 1.26 8.01 -51.93 -0.42 0.85 16 38 H 0.06 0.90 8.11 -51.93 -0.42 0.48 16 39 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.07 1.29 7.31 -51.93 -0.38 0.91 16 41 H 0.42 7.43 7.34 -40.82 -0.30 7.13 16 42 H 0.13 1.63 8.07 -51.93 -0.42 1.21 16 43 H 0.11 1.36 8.14 -51.93 -0.42 0.94 16 44 H 0.17 1.78 8.06 -52.49 -0.42 1.36 16 45 H 0.14 1.43 8.06 -52.49 -0.42 1.01 16 46 H 0.18 1.89 8.06 -52.48 -0.42 1.47 16 LS Contribution 377.88 15.07 5.69 5.69 Total: -1.00 -29.96 377.88 -9.90 -39.86 By element: Atomic # 1 Polarization: 19.19 SS G_CDS: -6.38 Total: 12.80 kcal Atomic # 6 Polarization: 0.34 SS G_CDS: -4.31 Total: -3.97 kcal Atomic # 7 Polarization: -57.38 SS G_CDS: 0.04 Total: -57.34 kcal Atomic # 8 Polarization: -11.67 SS G_CDS: 0.09 Total: -11.58 kcal Atomic # 14 Polarization: 19.55 SS G_CDS: -5.03 Total: 14.53 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -29.96 -9.90 -39.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273813240.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.180 kcal (2) G-P(sol) polarization free energy of solvation -29.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.860 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds