Wall clock time and date at job start Sat Apr 11 2020 06:05:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86808 * 119.99629 * 2 1 4 4 H 1.48495 * 109.47377 * 239.99647 * 3 2 1 5 5 H 1.48498 * 109.47151 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46955 * 119.99748 * 3 2 1 7 7 C 1.38807 * 120.00401 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99963 * 190.85996 * 7 2 1 9 9 N 1.36933 * 120.00263 * 10.86214 * 7 2 1 10 10 C 1.46683 * 121.32937 * 28.05563 * 9 7 2 11 11 C 1.50807 * 109.69100 * 135.70030 * 10 9 7 12 12 C 1.38836 * 117.81751 * 191.36123 * 11 10 9 13 13 C 1.37954 * 120.50636 * 180.46941 * 12 11 10 14 14 C 1.38266 * 119.72425 * 0.07999 * 13 12 11 15 15 C 1.37910 * 119.82149 * 359.75839 * 14 13 12 16 16 C 1.37672 * 122.34100 * 11.45529 * 11 10 9 17 17 C 1.50602 * 122.85904 * 358.57194 * 16 11 10 18 18 C 1.47235 * 121.33171 * 208.08466 * 9 7 2 19 19 H 1.09000 * 109.77433 * 124.59892 * 18 9 7 20 20 C 1.52997 * 109.77713 * 3.80149 * 18 9 7 21 21 N 1.46500 * 109.47258 * 54.99614 * 20 18 9 22 22 C 1.34776 * 119.99862 * 180.02562 * 21 20 18 23 23 O 1.21280 * 120.00344 * 359.97438 * 22 21 20 24 24 C 1.50709 * 119.99752 * 180.02562 * 22 21 20 25 25 N 1.46502 * 109.46936 * 179.97438 * 24 22 21 26 26 C 1.34945 * 126.03404 * 124.99731 * 25 24 22 27 27 C 1.35319 * 107.74666 * 179.97438 * 26 25 24 28 28 C 1.39874 * 107.91576 * 0.02562 * 27 26 25 29 29 N 1.30832 * 108.20318 * 359.73889 * 28 27 26 30 30 H 0.96998 * 120.00694 * 0.02562 * 1 2 3 31 31 H 1.08997 * 109.43614 * 255.77283 * 10 9 7 32 32 H 1.09003 * 109.42829 * 15.68130 * 10 9 7 33 33 H 1.07999 * 119.74457 * 0.48708 * 12 11 10 34 34 H 1.08001 * 120.13731 * 180.02562 * 13 12 11 35 35 H 1.08000 * 120.08861 * 179.77621 * 14 13 12 36 36 H 1.07995 * 119.70990 * 179.97438 * 15 14 13 37 37 H 1.08997 * 109.19949 * 259.87425 * 17 16 11 38 38 H 1.09005 * 109.20602 * 140.57957 * 17 16 11 39 39 H 1.08995 * 109.47595 * 174.99800 * 20 18 9 40 40 H 1.09006 * 109.46813 * 294.99768 * 20 18 9 41 41 H 0.97003 * 120.00153 * 0.02562 * 21 20 18 42 42 H 1.08996 * 109.46924 * 299.99684 * 24 22 21 43 43 H 1.08993 * 109.46908 * 60.00030 * 24 22 21 44 44 H 1.07993 * 126.13034 * 359.96454 * 26 25 24 45 45 H 1.07994 * 126.04618 * 180.02562 * 27 26 25 46 46 H 1.08007 * 125.89585 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 3.1039 1.6966 -1.2124 5 1 1.2850 2.7465 0.0006 6 1 3.1038 1.6966 1.2126 7 6 2.0102 -1.2021 0.0005 8 1 3.0757 -1.2103 0.1768 9 7 1.3441 -2.3775 -0.2224 10 6 0.1202 -2.4193 -1.0298 11 6 0.1768 -3.5905 -1.9781 12 6 -0.7768 -3.6553 -2.9852 13 6 -0.7825 -4.7074 -3.8774 14 6 0.1678 -5.7056 -3.7665 15 6 1.1175 -5.6405 -2.7686 16 6 1.1295 -4.5786 -1.8721 17 6 2.2120 -4.5610 -0.8253 18 6 1.8274 -3.6498 0.3392 19 1 1.0376 -4.1168 0.9277 20 6 3.0502 -3.3945 1.2226 21 7 2.7155 -2.3991 2.2441 22 6 3.6454 -2.0147 3.1407 23 8 4.7593 -2.4930 3.1021 24 6 3.3009 -0.9912 4.1919 25 7 4.4719 -0.7466 5.0376 26 6 5.0391 0.4535 5.2803 27 6 6.0919 0.2527 6.1064 28 6 6.1710 -1.1173 6.3773 29 7 5.1973 -1.7166 5.7414 30 1 -0.4851 0.8400 -0.0004 31 1 -0.7437 -2.5252 -0.3737 32 1 0.0308 -1.4951 -1.6008 33 1 -1.5195 -2.8760 -3.0708 34 1 -1.5268 -4.7517 -4.6588 35 1 0.1666 -6.5338 -4.4596 36 1 1.8587 -6.4213 -2.6834 37 1 3.1377 -4.1993 -1.2729 38 1 2.3667 -5.5735 -0.4524 39 1 3.3500 -4.3243 1.7058 40 1 3.8708 -3.0231 0.6086 41 1 1.8245 -2.0168 2.2752 42 1 3.0005 -0.0614 3.7089 43 1 2.4809 -1.3631 4.8060 44 1 4.7116 1.4040 4.8859 45 1 6.7540 1.0153 6.4890 46 1 6.9060 -1.5969 7.0068 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273813240.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:59 Heat of formation + Delta-G solvation = 85.769663 kcal Electronic energy + Delta-G solvation = -29478.095694 eV Core-core repulsion = 25562.621264 eV Total energy + Delta-G solvation = -3915.474431 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.07104 -40.92695 -40.24163 -38.09898 -35.35679 -34.55850 -34.18877 -32.96425 -31.80165 -30.98739 -30.53467 -28.67157 -27.35829 -26.37259 -24.53878 -22.90137 -22.82457 -22.14940 -21.92757 -21.14774 -20.57222 -18.72165 -18.19356 -17.75139 -17.64179 -16.95520 -16.54338 -16.38718 -16.06243 -15.93278 -15.57824 -15.38827 -15.15942 -14.90933 -14.61189 -14.46243 -14.19328 -14.03422 -13.80639 -13.76247 -13.56774 -13.25849 -13.23110 -13.00636 -12.72839 -12.62487 -12.50844 -12.28238 -12.17288 -11.86669 -11.61223 -11.54656 -11.33436 -11.07076 -10.65468 -10.29444 -9.88248 -9.54236 -9.49019 -9.26710 -8.66705 -7.85284 -5.30607 0.58244 0.62361 0.98646 1.41268 1.50247 1.52098 1.53514 1.64184 2.02699 2.34237 2.49122 2.97893 3.32455 3.49316 3.66956 3.83126 3.85592 4.05197 4.10619 4.13923 4.22512 4.24172 4.25932 4.38879 4.40263 4.49491 4.64606 4.70921 4.74011 4.80732 4.90622 4.91244 4.91507 5.17271 5.20115 5.22421 5.26989 5.42039 5.51883 5.57288 5.69650 5.70778 5.74523 5.78180 6.01257 6.08819 6.27449 6.36131 6.67496 6.83228 7.14873 7.29872 7.80569 8.37727 9.21521 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014719 B = 0.003290 C = 0.002801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1901.810600 B = 8509.865511 C = 9994.131235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.030 4.030 3 Si 0.942 3.058 4 H -0.298 1.298 5 H -0.294 1.294 6 H -0.268 1.268 7 C -0.234 4.234 8 H 0.062 0.938 9 N -0.599 5.599 10 C 0.224 3.776 11 C -0.109 4.109 12 C -0.137 4.137 13 C -0.127 4.127 14 C -0.132 4.132 15 C -0.128 4.128 16 C -0.084 4.084 17 C -0.085 4.085 18 C 0.161 3.839 19 H 0.045 0.955 20 C 0.146 3.854 21 N -0.688 5.688 22 C 0.495 3.505 23 O -0.575 6.575 24 C 0.115 3.885 25 N -0.372 5.372 26 C 0.044 3.956 27 C -0.278 4.278 28 C 0.028 3.972 29 N -0.319 5.319 30 H 0.251 0.749 31 H 0.017 0.983 32 H 0.061 0.939 33 H 0.116 0.884 34 H 0.143 0.857 35 H 0.148 0.852 36 H 0.139 0.861 37 H 0.066 0.934 38 H 0.093 0.907 39 H 0.072 0.928 40 H 0.046 0.954 41 H 0.416 0.584 42 H 0.144 0.856 43 H 0.133 0.867 44 H 0.200 0.800 45 H 0.174 0.826 46 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.957 -4.557 3.155 5.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.226 4.226 3 Si 0.771 3.229 4 H -0.225 1.225 5 H -0.220 1.220 6 H -0.193 1.193 7 C -0.364 4.364 8 H 0.079 0.921 9 N -0.323 5.323 10 C 0.099 3.901 11 C -0.110 4.110 12 C -0.156 4.156 13 C -0.145 4.145 14 C -0.149 4.149 15 C -0.146 4.146 16 C -0.085 4.085 17 C -0.124 4.124 18 C 0.055 3.945 19 H 0.062 0.938 20 C 0.022 3.978 21 N -0.339 5.339 22 C 0.280 3.720 23 O -0.455 6.455 24 C -0.010 4.010 25 N -0.154 5.154 26 C -0.101 4.101 27 C -0.307 4.307 28 C -0.158 4.158 29 N -0.140 5.140 30 H 0.060 0.940 31 H 0.035 0.965 32 H 0.079 0.921 33 H 0.134 0.866 34 H 0.160 0.840 35 H 0.165 0.835 36 H 0.156 0.844 37 H 0.084 0.916 38 H 0.111 0.889 39 H 0.090 0.910 40 H 0.064 0.936 41 H 0.253 0.747 42 H 0.162 0.838 43 H 0.151 0.849 44 H 0.217 0.783 45 H 0.191 0.809 46 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 1.937 -5.873 2.807 6.791 hybrid contribution 0.174 2.222 -0.195 2.237 sum 2.111 -3.651 2.613 4.961 Atomic orbital electron populations 1.70066 1.05878 1.25698 1.55533 1.25462 0.95737 0.99853 1.01550 0.85754 0.77758 0.81156 0.78190 1.22524 1.22038 1.19325 1.19060 0.90809 0.84060 1.42486 0.92061 1.44161 1.28337 1.02934 1.56890 1.19339 0.87806 0.92927 0.90037 1.20814 0.95549 0.97243 0.97422 1.21237 0.98977 0.99525 0.95825 1.21309 0.99794 0.94174 0.99223 1.21323 0.95259 0.99567 0.98789 1.21434 0.99812 0.98049 0.95336 1.19654 0.96370 0.94575 0.97866 1.20826 0.96309 1.00532 0.94762 1.20809 0.93789 0.87516 0.92381 0.93758 1.21152 0.96725 0.91084 0.88869 1.45834 1.15723 1.42646 1.29721 1.20848 0.84920 0.83402 0.82828 1.90697 1.23007 1.57559 1.74271 1.21625 0.86390 1.01711 0.91253 1.48265 1.24631 1.05283 1.37266 1.23207 0.96055 0.91127 0.99739 1.21844 1.03434 0.97067 1.08393 1.24461 0.97635 0.94328 0.99418 1.77390 1.09272 1.15601 1.11729 0.93974 0.96542 0.92124 0.86612 0.83965 0.83467 0.84361 0.91564 0.88852 0.90990 0.93588 0.74661 0.83819 0.84920 0.78290 0.80878 0.77745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -47.65 11.06 21.65 0.24 -47.41 16 2 C -0.03 -1.44 5.08 84.86 0.43 -1.01 16 3 Si 0.94 40.60 29.57 68.60 2.03 42.63 16 4 H -0.30 -13.48 7.11 99.48 0.71 -12.77 16 5 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 6 H -0.27 -10.73 7.11 99.48 0.71 -10.03 16 7 C -0.23 -11.04 6.96 84.03 0.58 -10.46 16 8 H 0.06 3.00 6.18 -2.91 -0.02 2.98 16 9 N -0.60 -26.19 2.85 -680.35 -1.94 -28.13 16 10 C 0.22 10.04 4.80 85.63 0.41 10.45 16 11 C -0.11 -4.16 5.82 -19.82 -0.12 -4.28 16 12 C -0.14 -4.60 9.62 22.35 0.22 -4.39 16 13 C -0.13 -3.43 10.05 22.21 0.22 -3.21 16 14 C -0.13 -3.28 10.04 22.20 0.22 -3.06 16 15 C -0.13 -3.55 9.59 22.37 0.21 -3.33 16 16 C -0.08 -2.87 5.76 -19.85 -0.11 -2.98 16 17 C -0.09 -2.73 5.21 29.74 0.15 -2.58 16 18 C 0.16 5.84 3.02 44.78 0.14 5.98 16 19 H 0.04 1.61 8.14 -2.39 -0.02 1.60 16 20 C 0.15 5.20 4.45 86.38 0.38 5.58 16 21 N -0.69 -24.45 4.01 -463.05 -1.86 -26.30 16 22 C 0.49 17.97 7.86 87.66 0.69 18.66 16 23 O -0.58 -25.40 15.72 -3.03 -0.05 -25.44 16 24 C 0.12 3.30 6.99 85.64 0.60 3.90 16 25 N -0.37 -11.56 3.40 -351.79 -1.19 -12.76 16 26 C 0.04 1.11 11.45 83.54 0.96 2.06 16 27 C -0.28 -6.58 10.80 21.99 0.24 -6.34 16 28 C 0.03 0.76 12.03 85.24 1.03 1.78 16 29 N -0.32 -10.97 11.66 -57.02 -0.66 -11.64 16 30 H 0.25 12.81 8.31 -92.71 -0.77 12.04 16 31 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.06 3.10 6.46 -2.39 -0.02 3.08 16 33 H 0.12 3.77 8.05 -2.91 -0.02 3.75 16 34 H 0.14 2.94 8.06 -2.91 -0.02 2.92 16 35 H 0.15 2.63 8.06 -2.91 -0.02 2.61 16 36 H 0.14 3.04 8.05 -2.91 -0.02 3.02 16 37 H 0.07 2.22 8.01 -2.39 -0.02 2.20 16 38 H 0.09 2.42 8.11 -2.38 -0.02 2.40 16 39 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 40 H 0.05 1.83 7.31 -2.38 -0.02 1.81 16 41 H 0.42 15.04 7.34 -92.71 -0.68 14.36 16 42 H 0.14 3.54 8.07 -2.39 -0.02 3.52 16 43 H 0.13 3.14 8.14 -2.39 -0.02 3.12 16 44 H 0.20 3.62 8.06 -2.91 -0.02 3.60 16 45 H 0.17 2.91 8.06 -2.91 -0.02 2.88 16 46 H 0.21 4.02 8.06 -2.91 -0.02 3.99 16 Total: -1.00 -67.34 377.88 3.14 -64.20 By element: Atomic # 1 Polarization: 37.74 SS G_CDS: 0.32 Total: 38.05 kcal Atomic # 6 Polarization: 0.53 SS G_CDS: 6.25 Total: 6.79 kcal Atomic # 7 Polarization: -120.82 SS G_CDS: -5.42 Total: -126.23 kcal Atomic # 8 Polarization: -25.40 SS G_CDS: -0.05 Total: -25.44 kcal Atomic # 14 Polarization: 40.60 SS G_CDS: 2.03 Total: 42.63 kcal Total: -67.34 3.14 -64.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273813240.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.974 kcal (2) G-P(sol) polarization free energy of solvation -67.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.204 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds