Wall clock time and date at job start Sat Apr 11 2020 06:06:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 119.99830 * 2 1 4 4 H 1.48501 * 109.46900 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47303 * 299.99229 * 3 2 1 6 6 H 1.48501 * 109.47548 * 59.99929 * 3 2 1 7 7 C 1.38812 * 119.99952 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99955 * 169.11109 * 7 2 1 9 9 N 1.36940 * 119.99954 * 349.10653 * 7 2 1 10 10 C 1.46684 * 121.33448 * 331.85657 * 9 7 2 11 11 C 1.50809 * 109.67367 * 224.43409 * 10 9 7 12 12 C 1.38836 * 117.80778 * 168.47395 * 11 10 9 13 13 C 1.37955 * 120.50665 * 179.48343 * 12 11 10 14 14 C 1.38268 * 119.71836 * 359.94538 * 13 12 11 15 15 C 1.37907 * 119.82551 * 0.26811 * 14 13 12 16 16 C 1.37674 * 122.34372 * 348.38937 * 11 10 9 17 17 C 1.50594 * 122.86269 * 1.53422 * 16 11 10 18 18 C 1.47223 * 121.32926 * 151.87550 * 9 7 2 19 19 H 1.09001 * 109.76847 * 235.43254 * 18 9 7 20 20 C 1.52996 * 109.77349 * 356.17058 * 18 9 7 21 21 N 1.46503 * 109.47300 * 304.99714 * 20 18 9 22 22 C 1.34776 * 120.00322 * 179.97438 * 21 20 18 23 23 O 1.21279 * 119.99571 * 0.02562 * 22 21 20 24 24 C 1.50700 * 120.00026 * 180.02562 * 22 21 20 25 25 N 1.46503 * 109.46880 * 179.97438 * 24 22 21 26 26 C 1.34947 * 126.03209 * 125.02315 * 25 24 22 27 27 C 1.35320 * 107.74236 * 179.97438 * 26 25 24 28 28 C 1.39873 * 107.92040 * 0.02562 * 27 26 25 29 29 N 1.30840 * 108.20111 * 359.97438 * 28 27 26 30 30 H 0.97001 * 120.00068 * 0.02562 * 1 2 3 31 31 H 1.09001 * 109.43334 * 344.48995 * 10 9 7 32 32 H 1.08990 * 109.43802 * 104.36581 * 10 9 7 33 33 H 1.08001 * 119.74255 * 359.49963 * 12 11 10 34 34 H 1.08001 * 120.14022 * 179.97438 * 13 12 11 35 35 H 1.07993 * 120.08857 * 180.24309 * 14 13 12 36 36 H 1.08002 * 119.70940 * 180.02562 * 15 14 13 37 37 H 1.09000 * 109.20022 * 219.44552 * 17 16 11 38 38 H 1.09007 * 109.20443 * 100.15365 * 17 16 11 39 39 H 1.09005 * 109.47411 * 185.00197 * 20 18 9 40 40 H 1.08995 * 109.47448 * 64.99896 * 20 18 9 41 41 H 0.97005 * 119.99447 * 0.02562 * 21 20 18 42 42 H 1.09002 * 109.47369 * 60.00178 * 24 22 21 43 43 H 1.09005 * 109.46907 * 300.00059 * 24 22 21 44 44 H 1.07995 * 126.13113 * 359.95804 * 26 25 24 45 45 H 1.07996 * 126.04066 * 180.02562 * 27 26 25 46 46 H 1.07997 * 125.89421 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8914 2.3965 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0756 -1.2106 -0.1761 9 7 1.3440 -2.3773 0.2252 10 6 0.1215 -2.4184 1.0348 11 6 0.1813 -3.5874 1.9856 12 6 -0.7682 -3.6492 2.9966 13 6 -0.7717 -4.6996 3.8908 14 6 0.1772 -5.6989 3.7781 15 6 1.1236 -5.6364 2.7770 16 6 1.1330 -4.5764 1.8781 17 6 2.2128 -4.5607 0.8285 18 6 1.8264 -3.6501 -0.3359 19 1 1.0360 -4.1170 -0.9235 20 6 3.0479 -3.3955 -1.2213 21 7 2.7116 -2.4012 -2.2433 22 6 3.6402 -2.0176 -3.1417 23 8 4.7541 -2.4958 -3.1042 24 6 3.2943 -0.9944 -4.1927 25 7 4.4643 -0.7499 -5.0398 26 6 4.5072 -0.8570 -6.3843 27 6 5.7632 -0.5487 -6.7827 28 6 6.5136 -0.2433 -5.6425 29 7 5.7359 -0.3633 -4.5971 30 1 -0.4850 0.8400 -0.0004 31 1 0.0318 -1.4927 1.6033 32 1 -0.7433 -2.5268 0.3804 33 1 -1.5099 -2.8689 3.0835 34 1 -1.5129 -4.7415 4.6753 35 1 0.1776 -6.5260 4.4725 36 1 1.8637 -6.4181 2.6904 37 1 2.3654 -5.5737 0.4561 38 1 3.1401 -4.1996 1.2734 39 1 3.3470 -4.3259 -1.7041 40 1 3.8694 -3.0235 -0.6090 41 1 1.8207 -2.0185 -2.2730 42 1 2.9951 -0.0642 -3.7096 43 1 2.4730 -1.3662 -4.8053 44 1 3.6864 -1.1386 -7.0272 45 1 6.1226 -0.5400 -7.8010 46 1 7.5550 0.0423 -5.6276 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273813241.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:04 Heat of formation + Delta-G solvation = 102.895641 kcal Electronic energy + Delta-G solvation = -29473.737514 eV Core-core repulsion = 25559.005722 eV Total energy + Delta-G solvation = -3914.731793 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 2.05 seconds Orbital eigenvalues (eV) -40.98635 -39.53094 -38.86102 -36.62190 -33.79218 -33.14531 -32.90878 -31.47327 -30.37685 -29.90309 -29.06869 -27.47940 -25.67813 -25.05400 -22.90383 -21.61626 -21.50817 -20.95202 -20.80689 -19.80874 -19.08787 -17.32615 -16.96632 -16.30105 -16.15518 -15.55791 -15.23612 -15.00015 -14.61091 -14.40877 -14.24605 -14.05271 -13.86368 -13.49798 -13.36982 -13.04316 -12.81782 -12.68588 -12.64056 -12.48448 -12.39059 -11.95955 -11.64592 -11.60501 -11.16568 -10.97012 -10.89349 -10.76553 -10.54935 -10.41178 -10.24749 -10.05205 -9.81429 -9.66780 -9.09410 -8.85420 -8.44255 -8.37477 -8.26937 -7.89782 -6.89140 -5.99519 -3.44068 1.82869 1.90429 2.06338 2.57678 3.01836 3.04563 3.24393 3.35405 3.41310 3.70589 4.24794 4.31276 4.70144 4.89031 5.06417 5.11737 5.18498 5.20054 5.24364 5.32656 5.34049 5.43128 5.53305 5.66988 5.68225 5.83773 5.87777 5.89458 5.99686 6.00681 6.11288 6.14816 6.24794 6.30363 6.50911 6.58163 6.75121 6.79411 6.90611 6.91482 7.01357 7.08879 7.10536 7.14139 7.45256 7.59124 7.66815 7.91294 8.10776 8.19239 8.72569 9.00274 9.59546 10.17974 11.09143 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014789 B = 0.003261 C = 0.002824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1892.842326 B = 8583.111526 C = 9911.004762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.008 3.992 3 Si 0.893 3.107 4 H -0.275 1.275 5 H -0.289 1.289 6 H -0.288 1.288 7 C -0.245 4.245 8 H 0.073 0.927 9 N -0.589 5.589 10 C 0.208 3.792 11 C -0.078 4.078 12 C -0.123 4.123 13 C -0.130 4.130 14 C -0.140 4.140 15 C -0.127 4.127 16 C -0.068 4.068 17 C -0.091 4.091 18 C 0.159 3.841 19 H 0.043 0.957 20 C 0.139 3.861 21 N -0.690 5.690 22 C 0.496 3.504 23 O -0.535 6.535 24 C 0.112 3.888 25 N -0.355 5.355 26 C 0.049 3.951 27 C -0.277 4.277 28 C 0.031 3.969 29 N -0.261 5.261 30 H 0.256 0.744 31 H 0.096 0.904 32 H 0.042 0.958 33 H 0.117 0.883 34 H 0.112 0.888 35 H 0.111 0.889 36 H 0.111 0.889 37 H 0.063 0.937 38 H 0.074 0.926 39 H 0.057 0.943 40 H 0.067 0.933 41 H 0.417 0.583 42 H 0.116 0.884 43 H 0.121 0.879 44 H 0.171 0.829 45 H 0.144 0.856 46 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.399 -6.157 -5.669 8.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.191 4.191 3 Si 0.722 3.278 4 H -0.200 1.200 5 H -0.215 1.215 6 H -0.214 1.214 7 C -0.374 4.374 8 H 0.091 0.909 9 N -0.312 5.312 10 C 0.083 3.917 11 C -0.080 4.080 12 C -0.142 4.142 13 C -0.148 4.148 14 C -0.158 4.158 15 C -0.146 4.146 16 C -0.068 4.068 17 C -0.130 4.130 18 C 0.051 3.949 19 H 0.060 0.940 20 C 0.015 3.985 21 N -0.343 5.343 22 C 0.279 3.721 23 O -0.412 6.412 24 C -0.013 4.013 25 N -0.137 5.137 26 C -0.097 4.097 27 C -0.307 4.307 28 C -0.156 4.156 29 N -0.081 5.081 30 H 0.066 0.934 31 H 0.114 0.886 32 H 0.060 0.940 33 H 0.135 0.865 34 H 0.130 0.870 35 H 0.129 0.871 36 H 0.129 0.871 37 H 0.081 0.919 38 H 0.092 0.908 39 H 0.076 0.924 40 H 0.085 0.915 41 H 0.254 0.746 42 H 0.134 0.866 43 H 0.139 0.861 44 H 0.188 0.812 45 H 0.162 0.838 46 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 0.880 -6.267 -4.292 7.647 hybrid contribution -0.101 1.002 -0.614 1.180 sum 0.779 -5.265 -4.906 7.238 Atomic orbital electron populations 1.69965 1.05034 1.25669 1.54232 1.25023 0.95318 0.98030 1.00693 0.86348 0.79807 0.84042 0.77556 1.20010 1.21537 1.21421 1.19187 0.91403 0.83189 1.43663 0.90939 1.44048 1.28639 1.02248 1.56312 1.19778 0.88588 0.93099 0.90277 1.21012 0.93271 0.97200 0.96471 1.21117 0.99215 0.98410 0.95449 1.20956 0.99192 0.95190 0.99490 1.20853 0.96684 0.99177 0.99088 1.21128 0.99070 0.98429 0.95928 1.19478 0.96506 0.94026 0.96810 1.20880 0.96982 0.99470 0.95676 1.20712 0.93831 0.88673 0.91645 0.93969 1.21235 0.97756 0.90461 0.89034 1.45823 1.15855 1.42843 1.29753 1.20262 0.85652 0.83154 0.82983 1.90726 1.21149 1.55839 1.73504 1.21542 0.85049 1.01313 0.93412 1.48157 1.08918 1.52206 1.04452 1.22510 0.99825 1.02443 0.84917 1.21420 0.93688 1.15623 0.99946 1.23883 1.00164 1.01208 0.90383 1.77563 0.88838 1.18913 1.22815 0.93421 0.88568 0.93986 0.86464 0.86979 0.87109 0.87079 0.91855 0.90779 0.92441 0.91479 0.74553 0.86573 0.86065 0.81157 0.83834 0.80398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.87 11.07 55.49 0.61 -22.26 16 2 C 0.01 0.20 5.08 -17.43 -0.09 0.11 16 3 Si 0.89 20.45 29.57 -169.99 -5.03 15.43 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.25 -5.77 6.96 -15.06 -0.10 -5.87 16 8 H 0.07 1.80 6.19 -52.49 -0.32 1.47 16 9 N -0.59 -12.61 2.85 -166.40 -0.47 -13.09 16 10 C 0.21 4.46 4.80 -5.04 -0.02 4.44 16 11 C -0.08 -1.48 5.82 -104.55 -0.61 -2.09 16 12 C -0.12 -2.10 9.62 -39.46 -0.38 -2.48 16 13 C -0.13 -1.94 10.05 -39.67 -0.40 -2.34 16 14 C -0.14 -2.02 10.04 -39.69 -0.40 -2.42 16 15 C -0.13 -1.96 9.59 -39.43 -0.38 -2.34 16 16 C -0.07 -1.19 5.76 -104.60 -0.60 -1.80 16 17 C -0.09 -1.50 5.21 -28.05 -0.15 -1.64 16 18 C 0.16 2.86 3.02 -67.65 -0.20 2.65 16 19 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 20 C 0.14 2.46 4.45 -4.04 -0.02 2.44 16 21 N -0.69 -12.09 4.01 -60.29 -0.24 -12.33 16 22 C 0.50 8.91 7.86 -10.99 -0.09 8.82 16 23 O -0.54 -11.60 15.71 5.56 0.09 -11.51 16 24 C 0.11 1.62 6.99 -5.19 -0.04 1.59 16 25 N -0.36 -5.61 3.40 -62.54 -0.21 -5.82 16 26 C 0.05 0.61 11.45 -17.22 -0.20 0.41 16 27 C -0.28 -3.44 10.80 -40.01 -0.43 -3.87 16 28 C 0.03 0.44 12.03 -17.36 -0.21 0.23 16 29 N -0.26 -4.74 11.64 30.63 0.36 -4.39 16 30 H 0.26 6.40 8.31 -40.82 -0.34 6.06 16 31 H 0.10 2.34 6.46 -51.93 -0.34 2.00 16 32 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.12 1.87 8.05 -52.49 -0.42 1.45 16 34 H 0.11 1.37 8.06 -52.49 -0.42 0.95 16 35 H 0.11 1.30 8.06 -52.49 -0.42 0.88 16 36 H 0.11 1.46 8.05 -52.49 -0.42 1.04 16 37 H 0.06 0.89 8.11 -51.93 -0.42 0.47 16 38 H 0.07 1.27 8.01 -51.93 -0.42 0.86 16 39 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 40 H 0.07 1.33 7.31 -51.93 -0.38 0.95 16 41 H 0.42 7.40 7.34 -40.82 -0.30 7.10 16 42 H 0.12 1.69 8.14 -51.93 -0.42 1.27 16 43 H 0.12 1.23 8.07 -51.93 -0.42 0.81 16 44 H 0.17 1.42 8.06 -52.49 -0.42 1.00 16 45 H 0.14 1.35 8.06 -52.49 -0.42 0.93 16 46 H 0.18 1.98 8.06 -52.49 -0.42 1.56 16 LS Contribution 377.87 15.07 5.69 5.69 Total: -1.00 -31.04 377.87 -9.90 -40.94 By element: Atomic # 1 Polarization: 17.86 SS G_CDS: -6.38 Total: 11.48 kcal Atomic # 6 Polarization: 0.17 SS G_CDS: -4.31 Total: -4.14 kcal Atomic # 7 Polarization: -57.93 SS G_CDS: 0.04 Total: -57.89 kcal Atomic # 8 Polarization: -11.60 SS G_CDS: 0.09 Total: -11.51 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.03 Total: 15.43 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -31.04 -9.90 -40.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273813241.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.835 kcal (2) G-P(sol) polarization free energy of solvation -31.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.940 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.05 seconds