Wall clock time and date at job start Sat Apr 11 2020 06:06:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 119.99830 * 2 1 4 4 H 1.48501 * 109.46900 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47303 * 299.99229 * 3 2 1 6 6 H 1.48501 * 109.47548 * 59.99929 * 3 2 1 7 7 C 1.38812 * 119.99952 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99955 * 169.11109 * 7 2 1 9 9 N 1.36940 * 119.99954 * 349.10653 * 7 2 1 10 10 C 1.46684 * 121.33448 * 331.85657 * 9 7 2 11 11 C 1.50809 * 109.67367 * 224.43409 * 10 9 7 12 12 C 1.38836 * 117.80778 * 168.47395 * 11 10 9 13 13 C 1.37955 * 120.50665 * 179.48343 * 12 11 10 14 14 C 1.38268 * 119.71836 * 359.94538 * 13 12 11 15 15 C 1.37907 * 119.82551 * 0.26811 * 14 13 12 16 16 C 1.37674 * 122.34372 * 348.38937 * 11 10 9 17 17 C 1.50594 * 122.86269 * 1.53422 * 16 11 10 18 18 C 1.47223 * 121.32926 * 151.87550 * 9 7 2 19 19 H 1.09001 * 109.76847 * 235.43254 * 18 9 7 20 20 C 1.52996 * 109.77349 * 356.17058 * 18 9 7 21 21 N 1.46503 * 109.47300 * 304.99714 * 20 18 9 22 22 C 1.34776 * 120.00322 * 179.97438 * 21 20 18 23 23 O 1.21279 * 119.99571 * 0.02562 * 22 21 20 24 24 C 1.50700 * 120.00026 * 180.02562 * 22 21 20 25 25 N 1.46503 * 109.46880 * 179.97438 * 24 22 21 26 26 C 1.34947 * 126.03209 * 125.02315 * 25 24 22 27 27 C 1.35320 * 107.74236 * 179.97438 * 26 25 24 28 28 C 1.39873 * 107.92040 * 0.02562 * 27 26 25 29 29 N 1.30840 * 108.20111 * 359.97438 * 28 27 26 30 30 H 0.97001 * 120.00068 * 0.02562 * 1 2 3 31 31 H 1.09001 * 109.43334 * 344.48995 * 10 9 7 32 32 H 1.08990 * 109.43802 * 104.36581 * 10 9 7 33 33 H 1.08001 * 119.74255 * 359.49963 * 12 11 10 34 34 H 1.08001 * 120.14022 * 179.97438 * 13 12 11 35 35 H 1.07993 * 120.08857 * 180.24309 * 14 13 12 36 36 H 1.08002 * 119.70940 * 180.02562 * 15 14 13 37 37 H 1.09000 * 109.20022 * 219.44552 * 17 16 11 38 38 H 1.09007 * 109.20443 * 100.15365 * 17 16 11 39 39 H 1.09005 * 109.47411 * 185.00197 * 20 18 9 40 40 H 1.08995 * 109.47448 * 64.99896 * 20 18 9 41 41 H 0.97005 * 119.99447 * 0.02562 * 21 20 18 42 42 H 1.09002 * 109.47369 * 60.00178 * 24 22 21 43 43 H 1.09005 * 109.46907 * 300.00059 * 24 22 21 44 44 H 1.07995 * 126.13113 * 359.95804 * 26 25 24 45 45 H 1.07996 * 126.04066 * 180.02562 * 27 26 25 46 46 H 1.07997 * 125.89421 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8914 2.3965 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0756 -1.2106 -0.1761 9 7 1.3440 -2.3773 0.2252 10 6 0.1215 -2.4184 1.0348 11 6 0.1813 -3.5874 1.9856 12 6 -0.7682 -3.6492 2.9966 13 6 -0.7717 -4.6996 3.8908 14 6 0.1772 -5.6989 3.7781 15 6 1.1236 -5.6364 2.7770 16 6 1.1330 -4.5764 1.8781 17 6 2.2128 -4.5607 0.8285 18 6 1.8264 -3.6501 -0.3359 19 1 1.0360 -4.1170 -0.9235 20 6 3.0479 -3.3955 -1.2213 21 7 2.7116 -2.4012 -2.2433 22 6 3.6402 -2.0176 -3.1417 23 8 4.7541 -2.4958 -3.1042 24 6 3.2943 -0.9944 -4.1927 25 7 4.4643 -0.7499 -5.0398 26 6 4.5072 -0.8570 -6.3843 27 6 5.7632 -0.5487 -6.7827 28 6 6.5136 -0.2433 -5.6425 29 7 5.7359 -0.3633 -4.5971 30 1 -0.4850 0.8400 -0.0004 31 1 0.0318 -1.4927 1.6033 32 1 -0.7433 -2.5268 0.3804 33 1 -1.5099 -2.8689 3.0835 34 1 -1.5129 -4.7415 4.6753 35 1 0.1776 -6.5260 4.4725 36 1 1.8637 -6.4181 2.6904 37 1 2.3654 -5.5737 0.4561 38 1 3.1401 -4.1996 1.2734 39 1 3.3470 -4.3259 -1.7041 40 1 3.8694 -3.0235 -0.6090 41 1 1.8207 -2.0185 -2.2730 42 1 2.9951 -0.0642 -3.7096 43 1 2.4730 -1.3662 -4.8053 44 1 3.6864 -1.1386 -7.0272 45 1 6.1226 -0.5400 -7.8010 46 1 7.5550 0.0423 -5.6276 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273813241.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:03 Heat of formation + Delta-G solvation = 84.930092 kcal Electronic energy + Delta-G solvation = -29474.516559 eV Core-core repulsion = 25559.005722 eV Total energy + Delta-G solvation = -3915.510837 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.06012 -40.92567 -40.23686 -38.10369 -35.36298 -34.56527 -34.18969 -32.96940 -31.80419 -30.97348 -30.53581 -28.66465 -27.37307 -26.36888 -24.54885 -22.89813 -22.82636 -22.15290 -21.89917 -21.14369 -20.58393 -18.70915 -18.17820 -17.82631 -17.60555 -16.94560 -16.56134 -16.40251 -16.02775 -15.88594 -15.69300 -15.32340 -15.16944 -14.93081 -14.65421 -14.38169 -14.19570 -14.04990 -13.80904 -13.76234 -13.56124 -13.29156 -13.21168 -13.00614 -12.80232 -12.62529 -12.54565 -12.28222 -12.16532 -11.89305 -11.61002 -11.50411 -11.33042 -11.05635 -10.68933 -10.29893 -9.88033 -9.53862 -9.47271 -9.26451 -8.68063 -7.89586 -5.33171 0.58659 0.62712 1.02922 1.35729 1.44332 1.51433 1.53432 1.63278 2.04239 2.36947 2.45968 2.98257 3.28657 3.48120 3.70101 3.82014 3.84028 4.07392 4.10806 4.18290 4.22633 4.24316 4.25974 4.39427 4.40896 4.49517 4.64807 4.71169 4.75303 4.81729 4.91427 4.91638 4.93139 5.18600 5.20394 5.22711 5.27256 5.42512 5.52142 5.57679 5.69377 5.70675 5.74838 5.77503 6.01507 6.14725 6.27606 6.34400 6.68199 6.85825 7.13344 7.30740 7.78682 8.34648 9.17448 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014789 B = 0.003261 C = 0.002824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1892.842326 B = 8583.111526 C = 9911.004762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.024 4.024 3 Si 0.934 3.066 4 H -0.289 1.289 5 H -0.284 1.284 6 H -0.296 1.296 7 C -0.228 4.228 8 H 0.058 0.942 9 N -0.599 5.599 10 C 0.224 3.776 11 C -0.109 4.109 12 C -0.137 4.137 13 C -0.127 4.127 14 C -0.132 4.132 15 C -0.128 4.128 16 C -0.084 4.084 17 C -0.085 4.085 18 C 0.162 3.838 19 H 0.049 0.951 20 C 0.145 3.855 21 N -0.689 5.689 22 C 0.494 3.506 23 O -0.576 6.576 24 C 0.114 3.886 25 N -0.372 5.372 26 C 0.053 3.947 27 C -0.281 4.281 28 C 0.025 3.975 29 N -0.332 5.332 30 H 0.251 0.749 31 H 0.060 0.940 32 H 0.019 0.981 33 H 0.116 0.884 34 H 0.142 0.858 35 H 0.148 0.852 36 H 0.139 0.861 37 H 0.095 0.905 38 H 0.064 0.936 39 H 0.076 0.924 40 H 0.041 0.959 41 H 0.416 0.584 42 H 0.111 0.889 43 H 0.169 0.831 44 H 0.215 0.785 45 H 0.176 0.824 46 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.070 -8.388 -6.223 10.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.221 4.221 3 Si 0.765 3.235 4 H -0.215 1.215 5 H -0.211 1.211 6 H -0.223 1.223 7 C -0.358 4.358 8 H 0.076 0.924 9 N -0.323 5.323 10 C 0.098 3.902 11 C -0.110 4.110 12 C -0.156 4.156 13 C -0.145 4.145 14 C -0.149 4.149 15 C -0.146 4.146 16 C -0.084 4.084 17 C -0.125 4.125 18 C 0.056 3.944 19 H 0.067 0.933 20 C 0.021 3.979 21 N -0.340 5.340 22 C 0.279 3.721 23 O -0.455 6.455 24 C -0.010 4.010 25 N -0.155 5.155 26 C -0.092 4.092 27 C -0.310 4.310 28 C -0.162 4.162 29 N -0.153 5.153 30 H 0.061 0.939 31 H 0.078 0.922 32 H 0.037 0.963 33 H 0.134 0.866 34 H 0.160 0.840 35 H 0.165 0.835 36 H 0.157 0.843 37 H 0.113 0.887 38 H 0.082 0.918 39 H 0.094 0.906 40 H 0.059 0.941 41 H 0.253 0.747 42 H 0.129 0.871 43 H 0.186 0.814 44 H 0.232 0.768 45 H 0.193 0.807 46 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 0.547 -8.507 -4.852 9.809 hybrid contribution 0.036 1.603 -0.409 1.655 sum 0.583 -6.904 -5.261 8.699 Atomic orbital electron populations 1.70056 1.05543 1.25440 1.55836 1.25324 0.95643 0.99358 1.01782 0.85727 0.78077 0.82574 0.77137 1.21516 1.21082 1.22324 1.19066 0.90691 0.84135 1.41894 0.92392 1.44166 1.28456 1.02866 1.56849 1.19349 0.87813 0.92980 0.90036 1.20802 0.95598 0.97190 0.97402 1.21236 0.99016 0.99525 0.95784 1.21309 0.99802 0.94180 0.99207 1.21322 0.95279 0.99555 0.98774 1.21434 0.99805 0.98076 0.95279 1.19650 0.96340 0.94576 0.97876 1.20830 0.96261 1.00607 0.94759 1.20825 0.93849 0.87359 0.92410 0.93310 1.21162 0.96659 0.91160 0.88917 1.45840 1.15776 1.42730 1.29623 1.20874 0.84826 0.83112 0.83266 1.90699 1.22689 1.57491 1.74670 1.21651 0.86165 0.99856 0.93371 1.48278 1.08449 1.53084 1.05677 1.23321 1.01252 1.00663 0.83962 1.21868 0.93445 1.14921 1.00789 1.24441 1.01099 1.00005 0.90626 1.77480 0.90664 1.21841 1.25287 0.93933 0.92219 0.96303 0.86632 0.83979 0.83464 0.84327 0.88656 0.91751 0.90585 0.94088 0.74656 0.87133 0.81375 0.76839 0.80697 0.78337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.35 11.07 21.65 0.24 -48.11 16 2 C -0.02 -1.23 5.08 84.86 0.43 -0.80 16 3 Si 0.93 43.51 29.57 68.60 2.03 45.54 16 4 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 5 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 6 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 7 C -0.23 -11.08 6.96 84.03 0.58 -10.50 16 8 H 0.06 3.00 6.19 -2.91 -0.02 2.98 16 9 N -0.60 -26.44 2.85 -680.37 -1.94 -28.38 16 10 C 0.22 10.03 4.80 85.63 0.41 10.44 16 11 C -0.11 -4.15 5.82 -19.82 -0.12 -4.26 16 12 C -0.14 -4.60 9.62 22.35 0.22 -4.38 16 13 C -0.13 -3.43 10.05 22.21 0.22 -3.20 16 14 C -0.13 -3.26 10.04 22.20 0.22 -3.04 16 15 C -0.13 -3.52 9.59 22.37 0.21 -3.30 16 16 C -0.08 -2.85 5.76 -19.85 -0.11 -2.96 16 17 C -0.09 -2.73 5.21 29.74 0.15 -2.57 16 18 C 0.16 5.82 3.02 44.78 0.14 5.95 16 19 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 20 C 0.15 5.17 4.45 86.38 0.38 5.56 16 21 N -0.69 -24.40 4.01 -463.06 -1.86 -26.26 16 22 C 0.49 17.91 7.86 87.66 0.69 18.59 16 23 O -0.58 -25.50 15.71 -3.03 -0.05 -25.54 16 24 C 0.11 3.24 6.99 85.63 0.60 3.84 16 25 N -0.37 -11.47 3.40 -351.78 -1.20 -12.66 16 26 C 0.05 1.19 11.45 83.54 0.96 2.15 16 27 C -0.28 -6.36 10.80 21.99 0.24 -6.13 16 28 C 0.02 0.70 12.03 85.24 1.03 1.72 16 29 N -0.33 -12.23 11.64 -57.02 -0.66 -12.89 16 30 H 0.25 12.99 8.31 -92.71 -0.77 12.22 16 31 H 0.06 3.07 6.46 -2.39 -0.02 3.06 16 32 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.12 3.77 8.05 -2.91 -0.02 3.75 16 34 H 0.14 2.94 8.06 -2.91 -0.02 2.91 16 35 H 0.15 2.61 8.06 -2.91 -0.02 2.59 16 36 H 0.14 3.01 8.05 -2.91 -0.02 2.99 16 37 H 0.10 2.42 8.11 -2.39 -0.02 2.40 16 38 H 0.06 2.18 8.01 -2.38 -0.02 2.16 16 39 H 0.08 2.43 8.14 -2.38 -0.02 2.41 16 40 H 0.04 1.68 7.31 -2.39 -0.02 1.66 16 41 H 0.42 14.95 7.34 -92.70 -0.68 14.27 16 42 H 0.11 3.24 8.14 -2.39 -0.02 3.22 16 43 H 0.17 2.99 8.07 -2.38 -0.02 2.97 16 44 H 0.22 2.65 8.06 -2.91 -0.02 2.63 16 45 H 0.18 2.69 8.06 -2.91 -0.02 2.67 16 46 H 0.20 4.33 8.06 -2.91 -0.02 4.31 16 Total: -1.00 -71.46 377.87 3.13 -68.33 By element: Atomic # 1 Polarization: 32.55 SS G_CDS: 0.32 Total: 32.87 kcal Atomic # 6 Polarization: 0.85 SS G_CDS: 6.25 Total: 7.11 kcal Atomic # 7 Polarization: -122.88 SS G_CDS: -5.42 Total: -128.30 kcal Atomic # 8 Polarization: -25.50 SS G_CDS: -0.05 Total: -25.54 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Total: -71.46 3.13 -68.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273813241.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.256 kcal (2) G-P(sol) polarization free energy of solvation -71.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.326 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds