Wall clock time and date at job start Sat Apr 11 2020 06:06:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86798 * 120.00257 * 2 1 4 4 H 1.48501 * 109.46999 * 90.00421 * 3 2 1 5 5 H 1.48499 * 109.46706 * 209.99798 * 3 2 1 6 6 H 1.48490 * 109.47135 * 330.00291 * 3 2 1 7 7 C 1.38818 * 119.99581 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99817 * 0.02562 * 7 2 1 9 9 N 1.36930 * 119.99892 * 179.97438 * 7 2 1 10 10 C 1.46499 * 119.99988 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47341 * 182.71328 * 10 9 7 12 12 H 1.09006 * 109.87178 * 316.92432 * 11 10 9 13 13 C 1.54321 * 109.88427 * 195.90788 * 11 10 9 14 14 C 1.55157 * 102.94129 * 218.39328 * 13 11 10 15 15 C 1.54907 * 101.58372 * 35.49847 * 14 13 11 16 16 N 1.47020 * 109.88095 * 78.09803 * 11 10 9 17 17 C 1.34781 * 125.64448 * 298.33842 * 16 11 10 18 18 O 1.21611 * 120.00321 * 1.66097 * 17 16 11 19 19 C 1.47291 * 119.99661 * 181.66385 * 17 16 11 20 20 C 1.37965 * 126.80478 * 350.84442 * 19 17 16 21 21 N 1.34169 * 107.88404 * 179.83619 * 20 19 17 22 22 H 0.97000 * 125.16289 * 180.16434 * 21 20 19 23 23 N 1.39771 * 109.67259 * 0.44176 * 21 20 19 24 24 C 1.31365 * 109.08086 * 359.72147 * 23 21 20 25 25 C 1.48297 * 126.51485 * 180.02562 * 24 23 21 26 26 C 1.39378 * 120.12148 * 144.69997 * 25 24 23 27 27 C 1.38009 * 119.86609 * 179.74787 * 26 25 24 28 28 C 1.38331 * 120.13058 * 0.53728 * 27 26 25 29 29 C 1.38331 * 120.24704 * 359.73622 * 28 27 26 30 30 C 1.38005 * 120.12928 * 359.97438 * 29 28 27 31 31 H 0.96998 * 119.99256 * 359.97438 * 1 2 3 32 32 H 0.96995 * 120.00218 * 359.97438 * 9 7 2 33 33 H 1.08997 * 109.47416 * 302.71556 * 10 9 7 34 34 H 1.09009 * 109.46704 * 62.71638 * 10 9 7 35 35 H 1.08997 * 110.71847 * 336.74824 * 13 11 10 36 36 H 1.09003 * 110.72334 * 100.02779 * 13 11 10 37 37 H 1.09000 * 111.00829 * 153.57566 * 14 13 11 38 38 H 1.09009 * 111.00228 * 277.42540 * 14 13 11 39 39 H 1.09002 * 110.36570 * 81.83486 * 15 14 13 40 40 H 1.09002 * 110.36824 * 204.15756 * 15 14 13 41 41 H 1.07991 * 126.06262 * 359.96859 * 20 19 17 42 42 H 1.07995 * 120.07091 * 0.02562 * 26 25 24 43 43 H 1.08008 * 119.93661 * 180.27588 * 27 26 25 44 44 H 1.07994 * 119.87989 * 179.76617 * 28 27 26 45 45 H 1.07997 * 119.93372 * 180.02562 * 29 28 27 46 46 H 1.07996 * 120.06477 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0463 1.4001 5 1 3.5478 1.4399 -0.7000 6 1 1.4478 2.6526 -0.6999 7 6 2.0102 -1.2022 -0.0005 8 1 1.4701 -2.1375 -0.0014 9 7 3.3795 -1.2023 -0.0011 10 6 4.1120 -2.4711 -0.0022 11 6 5.6149 -2.1925 0.0657 12 1 5.8703 -1.3719 -0.6049 13 6 6.4019 -3.4591 -0.3314 14 6 7.6089 -3.4380 0.6433 15 6 6.9622 -2.8601 1.9268 16 7 5.9989 -1.8541 1.4439 17 6 5.5455 -0.7986 2.1489 18 8 4.7257 -0.0463 1.6581 19 6 6.0432 -0.5562 3.5139 20 6 6.8289 -1.4019 4.2695 21 7 7.0613 -0.8049 5.4483 22 1 7.5901 -1.1800 6.1698 23 7 6.4204 0.4368 5.4813 24 6 5.7966 0.6285 4.3413 25 6 4.9956 1.8178 3.9628 26 6 5.0009 2.2745 2.6460 27 6 4.2494 3.3787 2.2985 28 6 3.5006 4.0384 3.2565 29 6 3.4961 3.5929 4.5660 30 6 4.2391 2.4863 4.9238 31 1 -0.4849 0.8401 0.0004 32 1 3.8646 -0.3624 -0.0014 33 1 3.8130 -3.0640 0.8621 34 1 3.8852 -3.0206 -0.9159 35 1 5.7974 -4.3529 -0.1772 36 1 6.7402 -3.3947 -1.3656 37 1 7.9889 -4.4448 0.8166 38 1 8.3978 -2.7825 0.2742 39 1 6.4458 -3.6459 2.4782 40 1 7.7192 -2.3898 2.5544 41 1 7.1941 -2.3716 3.9652 42 1 5.5883 1.7628 1.8981 43 1 4.2491 3.7309 1.2775 44 1 2.9170 4.9042 2.9809 45 1 2.9094 4.1115 5.3097 46 1 4.2351 2.1396 5.9466 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277910989.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:14 Heat of formation + Delta-G solvation = 117.457862 kcal Electronic energy + Delta-G solvation = -30778.524735 eV Core-core repulsion = 26864.424408 eV Total energy + Delta-G solvation = -3914.100327 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.28445 -39.62431 -38.58800 -37.01207 -34.42058 -32.79000 -32.02929 -31.29682 -30.68455 -29.98565 -29.51827 -28.94361 -25.35874 -23.86904 -23.36350 -22.45326 -21.99178 -21.25848 -20.92399 -19.86069 -19.32763 -17.60857 -17.37049 -16.65124 -16.37268 -16.15756 -15.23466 -15.13180 -14.74820 -14.45306 -14.29859 -13.99837 -13.85134 -13.71278 -13.25677 -13.06685 -12.99629 -12.78809 -12.60013 -12.44106 -12.24978 -11.95874 -11.69728 -11.45699 -11.30136 -11.03576 -10.98414 -10.76304 -10.66768 -10.40247 -10.32034 -9.97956 -9.86981 -9.49354 -9.11580 -8.86095 -8.69114 -8.28415 -8.26257 -8.13772 -6.83337 -5.46880 -2.78256 1.22033 1.49357 1.81197 2.45380 2.56506 3.21380 3.66693 3.72596 3.78050 3.86479 4.16357 4.28713 4.44582 4.47669 4.58170 4.81580 4.98048 5.03293 5.15674 5.20654 5.25535 5.29112 5.33829 5.37259 5.39823 5.49179 5.62456 5.73694 5.76559 5.82417 5.89144 5.93537 5.95926 6.08451 6.11094 6.29210 6.31701 6.37369 6.41739 6.75955 6.77467 6.80500 6.89127 6.92501 6.99617 7.29807 7.43082 7.84502 8.28013 8.65996 8.76382 9.61795 10.33840 10.56406 11.71080 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.007794 B = 0.007262 C = 0.004133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3591.525795 B = 3854.953239 C = 6773.793806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.001 3.999 3 Si 0.889 3.111 4 H -0.254 1.254 5 H -0.283 1.283 6 H -0.310 1.310 7 C -0.234 4.234 8 H 0.079 0.921 9 N -0.744 5.744 10 C 0.152 3.848 11 C 0.129 3.871 12 H 0.074 0.926 13 C -0.124 4.124 14 C -0.132 4.132 15 C 0.087 3.913 16 N -0.612 5.612 17 C 0.595 3.405 18 O -0.485 6.485 19 C -0.263 4.263 20 C 0.083 3.917 21 N -0.470 5.470 22 H 0.441 0.559 23 N -0.288 5.288 24 C 0.180 3.820 25 C -0.029 4.029 26 C -0.048 4.048 27 C -0.115 4.115 28 C -0.106 4.106 29 C -0.132 4.132 30 C -0.090 4.090 31 H 0.254 0.746 32 H 0.378 0.622 33 H 0.023 0.977 34 H 0.026 0.974 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.075 0.925 39 H 0.069 0.931 40 H 0.077 0.923 41 H 0.196 0.804 42 H 0.132 0.868 43 H 0.118 0.882 44 H 0.119 0.881 45 H 0.121 0.879 46 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.263 -3.604 9.101 23.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.194 4.194 3 Si 0.720 3.280 4 H -0.179 1.179 5 H -0.210 1.210 6 H -0.239 1.239 7 C -0.364 4.364 8 H 0.097 0.903 9 N -0.395 5.395 10 C 0.023 3.977 11 C 0.026 3.974 12 H 0.092 0.908 13 C -0.162 4.162 14 C -0.170 4.170 15 C -0.036 4.036 16 N -0.349 5.349 17 C 0.384 3.616 18 O -0.358 6.358 19 C -0.278 4.278 20 C -0.065 4.065 21 N -0.175 5.175 22 H 0.285 0.715 23 N -0.108 5.108 24 C 0.012 3.988 25 C -0.032 4.032 26 C -0.068 4.068 27 C -0.133 4.133 28 C -0.125 4.125 29 C -0.150 4.150 30 C -0.109 4.109 31 H 0.063 0.937 32 H 0.218 0.782 33 H 0.041 0.959 34 H 0.044 0.956 35 H 0.099 0.901 36 H 0.100 0.900 37 H 0.100 0.900 38 H 0.093 0.907 39 H 0.087 0.913 40 H 0.095 0.905 41 H 0.213 0.787 42 H 0.150 0.850 43 H 0.136 0.864 44 H 0.137 0.863 45 H 0.139 0.861 46 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 20.848 -2.702 10.045 23.299 hybrid contribution 0.475 0.171 -0.350 0.614 sum 21.323 -2.531 9.695 23.560 Atomic orbital electron populations 1.69759 1.05359 1.25430 1.58902 1.24612 0.95118 0.97559 1.02076 0.86490 0.78001 0.84073 0.79419 1.17892 1.21008 1.23854 1.18989 0.81232 0.94191 1.42018 0.90289 1.43024 1.03786 1.02571 1.90147 1.20929 0.87890 0.90616 0.98248 1.21920 0.96315 0.96726 0.82404 0.90759 1.22638 0.96051 0.97806 0.99738 1.22772 0.97783 1.01403 0.95084 1.22641 0.91902 0.91672 0.97398 1.48301 1.45300 1.26168 1.15112 1.16758 0.81029 0.80391 0.83448 1.90764 1.30401 1.45089 1.69514 1.21352 1.11112 0.97290 0.98024 1.23729 0.97089 0.99072 0.86651 1.45944 1.42381 1.14721 1.14464 0.71510 1.77318 1.14408 0.98402 1.20710 1.21841 0.94256 0.93228 0.89486 1.17568 0.98625 0.92772 0.94184 1.21254 0.97350 0.93724 0.94427 1.20990 0.97158 0.96056 0.99131 1.21194 0.98189 0.99743 0.93340 1.20922 1.00238 0.97387 0.96451 1.21054 0.96176 0.95152 0.98530 0.93677 0.78198 0.95920 0.95601 0.90140 0.90016 0.90009 0.90666 0.91338 0.90528 0.78725 0.84988 0.86376 0.86260 0.86061 0.86122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -32.18 13.97 55.49 0.78 -31.40 16 2 C 0.00 0.03 5.50 -17.43 -0.10 -0.07 16 3 Si 0.89 24.79 25.85 -169.99 -4.39 20.40 16 4 H -0.25 -6.84 5.01 56.52 0.28 -6.55 16 5 H -0.28 -7.70 6.52 56.52 0.37 -7.34 16 6 H -0.31 -8.79 7.11 56.52 0.40 -8.39 16 7 C -0.23 -7.29 10.47 -15.06 -0.16 -7.44 16 8 H 0.08 2.61 8.06 -52.49 -0.42 2.18 16 9 N -0.74 -19.54 4.14 -59.91 -0.25 -19.79 16 10 C 0.15 3.13 5.60 -4.04 -0.02 3.11 16 11 C 0.13 2.01 3.05 -66.95 -0.20 1.80 16 12 H 0.07 1.25 8.09 -51.93 -0.42 0.83 16 13 C -0.12 -1.28 6.42 -24.90 -0.16 -1.44 16 14 C -0.13 -1.00 7.08 -24.58 -0.17 -1.18 16 15 C 0.09 0.79 5.28 -2.53 -0.01 0.78 16 16 N -0.61 -8.96 3.06 -164.32 -0.50 -9.47 16 17 C 0.60 10.66 7.31 -12.58 -0.09 10.57 16 18 O -0.48 -10.80 8.46 5.27 0.04 -10.76 16 19 C -0.26 -4.04 6.20 -102.95 -0.64 -4.68 16 20 C 0.08 0.86 10.31 -16.63 -0.17 0.69 16 21 N -0.47 -4.67 7.20 30.81 0.22 -4.45 16 22 H 0.44 2.48 8.96 -182.85 -1.64 0.84 16 23 N -0.29 -4.14 12.63 34.58 0.44 -3.70 16 24 C 0.18 3.00 6.93 -80.56 -0.56 2.44 16 25 C -0.03 -0.53 5.69 -104.91 -0.60 -1.13 16 26 C -0.05 -0.91 7.70 -39.24 -0.30 -1.21 16 27 C -0.12 -2.11 7.37 -39.63 -0.29 -2.40 16 28 C -0.11 -1.75 10.04 -39.51 -0.40 -2.15 16 29 C -0.13 -2.06 10.03 -39.63 -0.40 -2.45 16 30 C -0.09 -1.49 9.76 -39.24 -0.38 -1.87 16 31 H 0.25 8.27 8.31 -40.82 -0.34 7.93 16 32 H 0.38 10.02 3.03 -40.82 -0.12 9.89 16 33 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.03 0.53 8.06 -51.92 -0.42 0.11 16 35 H 0.08 0.81 7.85 -51.93 -0.41 0.40 16 36 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.07 0.55 8.14 -51.92 -0.42 0.12 16 39 H 0.07 0.56 8.03 -51.93 -0.42 0.14 16 40 H 0.08 0.53 5.33 -51.93 -0.28 0.25 16 41 H 0.20 1.21 4.81 -52.49 -0.25 0.96 16 42 H 0.13 2.55 5.97 -52.49 -0.31 2.24 16 43 H 0.12 2.05 7.71 -52.48 -0.40 1.65 16 44 H 0.12 1.66 8.06 -52.49 -0.42 1.24 16 45 H 0.12 1.52 8.06 -52.49 -0.42 1.10 16 46 H 0.12 1.79 8.06 -52.49 -0.42 1.37 16 LS Contribution 359.67 15.07 5.42 5.42 Total: -1.00 -40.72 359.67 -10.25 -50.97 By element: Atomic # 1 Polarization: 16.75 SS G_CDS: -7.34 Total: 9.40 kcal Atomic # 6 Polarization: -1.97 SS G_CDS: -4.66 Total: -6.63 kcal Atomic # 7 Polarization: -69.49 SS G_CDS: 0.68 Total: -68.81 kcal Atomic # 8 Polarization: -10.80 SS G_CDS: 0.04 Total: -10.76 kcal Atomic # 14 Polarization: 24.79 SS G_CDS: -4.39 Total: 20.40 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -40.72 -10.25 -50.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277910989.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.428 kcal (2) G-P(sol) polarization free energy of solvation -40.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.970 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds