Wall clock time and date at job start Sat Apr 11 2020 06:06:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86798 * 120.00257 * 2 1 4 4 H 1.48501 * 109.46999 * 90.00421 * 3 2 1 5 5 H 1.48499 * 109.46706 * 209.99798 * 3 2 1 6 6 H 1.48490 * 109.47135 * 330.00291 * 3 2 1 7 7 C 1.38818 * 119.99581 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99817 * 0.02562 * 7 2 1 9 9 N 1.36930 * 119.99892 * 179.97438 * 7 2 1 10 10 C 1.46499 * 119.99988 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47341 * 182.71328 * 10 9 7 12 12 H 1.09006 * 109.87178 * 316.92432 * 11 10 9 13 13 C 1.54321 * 109.88427 * 195.90788 * 11 10 9 14 14 C 1.55157 * 102.94129 * 218.39328 * 13 11 10 15 15 C 1.54907 * 101.58372 * 35.49847 * 14 13 11 16 16 N 1.47020 * 109.88095 * 78.09803 * 11 10 9 17 17 C 1.34781 * 125.64448 * 298.33842 * 16 11 10 18 18 O 1.21611 * 120.00321 * 1.66097 * 17 16 11 19 19 C 1.47291 * 119.99661 * 181.66385 * 17 16 11 20 20 C 1.37965 * 126.80478 * 350.84442 * 19 17 16 21 21 N 1.34169 * 107.88404 * 179.83619 * 20 19 17 22 22 H 0.97000 * 125.16289 * 180.16434 * 21 20 19 23 23 N 1.39771 * 109.67259 * 0.44176 * 21 20 19 24 24 C 1.31365 * 109.08086 * 359.72147 * 23 21 20 25 25 C 1.48297 * 126.51485 * 180.02562 * 24 23 21 26 26 C 1.39378 * 120.12148 * 144.69997 * 25 24 23 27 27 C 1.38009 * 119.86609 * 179.74787 * 26 25 24 28 28 C 1.38331 * 120.13058 * 0.53728 * 27 26 25 29 29 C 1.38331 * 120.24704 * 359.73622 * 28 27 26 30 30 C 1.38005 * 120.12928 * 359.97438 * 29 28 27 31 31 H 0.96998 * 119.99256 * 359.97438 * 1 2 3 32 32 H 0.96995 * 120.00218 * 359.97438 * 9 7 2 33 33 H 1.08997 * 109.47416 * 302.71556 * 10 9 7 34 34 H 1.09009 * 109.46704 * 62.71638 * 10 9 7 35 35 H 1.08997 * 110.71847 * 336.74824 * 13 11 10 36 36 H 1.09003 * 110.72334 * 100.02779 * 13 11 10 37 37 H 1.09000 * 111.00829 * 153.57566 * 14 13 11 38 38 H 1.09009 * 111.00228 * 277.42540 * 14 13 11 39 39 H 1.09002 * 110.36570 * 81.83486 * 15 14 13 40 40 H 1.09002 * 110.36824 * 204.15756 * 15 14 13 41 41 H 1.07991 * 126.06262 * 359.96859 * 20 19 17 42 42 H 1.07995 * 120.07091 * 0.02562 * 26 25 24 43 43 H 1.08008 * 119.93661 * 180.27588 * 27 26 25 44 44 H 1.07994 * 119.87989 * 179.76617 * 28 27 26 45 45 H 1.07997 * 119.93372 * 180.02562 * 29 28 27 46 46 H 1.07996 * 120.06477 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0463 1.4001 5 1 3.5478 1.4399 -0.7000 6 1 1.4478 2.6526 -0.6999 7 6 2.0102 -1.2022 -0.0005 8 1 1.4701 -2.1375 -0.0014 9 7 3.3795 -1.2023 -0.0011 10 6 4.1120 -2.4711 -0.0022 11 6 5.6149 -2.1925 0.0657 12 1 5.8703 -1.3719 -0.6049 13 6 6.4019 -3.4591 -0.3314 14 6 7.6089 -3.4380 0.6433 15 6 6.9622 -2.8601 1.9268 16 7 5.9989 -1.8541 1.4439 17 6 5.5455 -0.7986 2.1489 18 8 4.7257 -0.0463 1.6581 19 6 6.0432 -0.5562 3.5139 20 6 6.8289 -1.4019 4.2695 21 7 7.0613 -0.8049 5.4483 22 1 7.5901 -1.1800 6.1698 23 7 6.4204 0.4368 5.4813 24 6 5.7966 0.6285 4.3413 25 6 4.9956 1.8178 3.9628 26 6 5.0009 2.2745 2.6460 27 6 4.2494 3.3787 2.2985 28 6 3.5006 4.0384 3.2565 29 6 3.4961 3.5929 4.5660 30 6 4.2391 2.4863 4.9238 31 1 -0.4849 0.8401 0.0004 32 1 3.8646 -0.3624 -0.0014 33 1 3.8130 -3.0640 0.8621 34 1 3.8852 -3.0206 -0.9159 35 1 5.7974 -4.3529 -0.1772 36 1 6.7402 -3.3947 -1.3656 37 1 7.9889 -4.4448 0.8166 38 1 8.3978 -2.7825 0.2742 39 1 6.4458 -3.6459 2.4782 40 1 7.7192 -2.3898 2.5544 41 1 7.1941 -2.3716 3.9652 42 1 5.5883 1.7628 1.8981 43 1 4.2491 3.7309 1.2775 44 1 2.9170 4.9042 2.9809 45 1 2.9094 4.1115 5.3097 46 1 4.2351 2.1396 5.9466 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277910989.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:11 Heat of formation + Delta-G solvation = 87.480159 kcal Electronic energy + Delta-G solvation = -30779.824666 eV Core-core repulsion = 26864.424408 eV Total energy + Delta-G solvation = -3915.400258 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 4.10 seconds Orbital eigenvalues (eV) -42.31082 -40.74059 -39.82369 -38.20177 -36.39194 -33.89526 -33.68269 -32.84250 -31.94655 -31.19602 -30.69596 -30.25827 -26.83859 -25.19182 -24.53523 -23.86082 -23.52260 -22.27577 -22.09420 -21.06331 -20.51231 -19.59212 -18.47672 -17.82944 -17.55653 -17.29112 -16.55814 -16.45588 -16.28543 -15.95384 -15.63310 -15.34388 -15.10069 -14.88558 -14.65567 -14.45744 -14.34587 -14.14172 -13.93718 -13.74022 -13.55469 -13.42205 -13.28052 -12.85409 -12.54462 -12.39509 -12.20389 -12.04749 -11.93738 -11.84187 -11.77726 -11.65687 -11.50906 -11.08672 -10.88156 -10.63749 -9.94149 -9.72583 -9.49190 -9.32754 -9.07330 -7.97363 -5.23623 -0.01661 0.50650 0.55885 1.25785 1.37769 1.53937 1.61430 1.70507 2.16169 2.49491 2.61467 2.90679 3.26716 3.35667 3.56662 3.58971 3.72114 3.94736 3.96362 4.07209 4.12851 4.14962 4.24617 4.30695 4.34720 4.37751 4.43037 4.53382 4.63683 4.68956 4.80329 4.82752 4.90645 4.92583 5.05821 5.09764 5.14681 5.18891 5.22716 5.45395 5.50237 5.54481 5.60207 5.62666 5.77951 6.04011 6.23321 6.27255 6.42479 6.73442 7.18967 7.48166 8.06347 8.28947 9.23700 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.007794 B = 0.007262 C = 0.004133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3591.525795 B = 3854.953239 C = 6773.793806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.990 5.990 2 C -0.067 4.067 3 Si 0.962 3.038 4 H -0.244 1.244 5 H -0.280 1.280 6 H -0.316 1.316 7 C -0.221 4.221 8 H 0.048 0.952 9 N -0.748 5.748 10 C 0.146 3.854 11 C 0.133 3.867 12 H 0.055 0.945 13 C -0.117 4.117 14 C -0.117 4.117 15 C 0.075 3.925 16 N -0.613 5.613 17 C 0.584 3.416 18 O -0.543 6.543 19 C -0.303 4.303 20 C 0.126 3.874 21 N -0.444 5.444 22 H 0.463 0.537 23 N -0.300 5.300 24 C 0.154 3.846 25 C -0.045 4.045 26 C -0.065 4.065 27 C -0.140 4.140 28 C -0.117 4.117 29 C -0.131 4.131 30 C -0.100 4.100 31 H 0.252 0.748 32 H 0.379 0.621 33 H 0.012 0.988 34 H 0.030 0.970 35 H 0.086 0.914 36 H 0.095 0.905 37 H 0.118 0.882 38 H 0.082 0.918 39 H 0.087 0.913 40 H 0.106 0.894 41 H 0.245 0.755 42 H 0.118 0.882 43 H 0.117 0.883 44 H 0.143 0.857 45 H 0.154 0.846 46 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.982 -5.386 10.927 27.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.642 5.642 2 C -0.257 4.257 3 Si 0.792 3.208 4 H -0.169 1.169 5 H -0.206 1.206 6 H -0.244 1.244 7 C -0.352 4.352 8 H 0.066 0.934 9 N -0.399 5.399 10 C 0.019 3.981 11 C 0.029 3.971 12 H 0.073 0.927 13 C -0.155 4.155 14 C -0.154 4.154 15 C -0.046 4.046 16 N -0.348 5.348 17 C 0.374 3.626 18 O -0.421 6.421 19 C -0.318 4.318 20 C -0.025 4.025 21 N -0.152 5.152 22 H 0.312 0.688 23 N -0.122 5.122 24 C -0.014 4.014 25 C -0.047 4.047 26 C -0.085 4.085 27 C -0.158 4.158 28 C -0.135 4.135 29 C -0.148 4.148 30 C -0.120 4.120 31 H 0.060 0.940 32 H 0.219 0.781 33 H 0.030 0.970 34 H 0.048 0.952 35 H 0.104 0.896 36 H 0.114 0.886 37 H 0.137 0.863 38 H 0.101 0.899 39 H 0.105 0.895 40 H 0.123 0.877 41 H 0.260 0.740 42 H 0.136 0.864 43 H 0.135 0.865 44 H 0.161 0.839 45 H 0.172 0.828 46 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 24.669 -4.552 11.914 27.771 hybrid contribution -0.605 0.522 -0.853 1.169 sum 24.065 -4.030 11.061 26.790 Atomic orbital electron populations 1.69919 1.06989 1.26052 1.61287 1.25385 0.95981 1.01176 1.03190 0.85390 0.76270 0.79406 0.79765 1.16906 1.20639 1.24439 1.19051 0.83566 0.92832 1.39788 0.93433 1.43148 1.02106 1.04926 1.89769 1.21181 0.91291 0.88077 0.97552 1.21837 0.93201 0.98821 0.83284 0.92726 1.22640 0.96665 0.94763 1.01424 1.22793 0.96307 1.03561 0.92763 1.23084 0.91613 0.90971 0.98970 1.48380 1.45601 1.26266 1.14524 1.17258 0.80527 0.80388 0.84430 1.90693 1.33227 1.47295 1.70871 1.21270 1.14180 0.98623 0.97762 1.24262 0.93841 0.99232 0.85154 1.45996 1.40951 1.13219 1.15067 0.68779 1.77235 1.14674 1.00397 1.19885 1.21819 0.95310 0.93600 0.90674 1.17867 0.99108 0.93611 0.94107 1.21219 0.98132 0.94244 0.94874 1.21185 0.98230 0.96690 0.99738 1.21534 0.98086 1.00402 0.93501 1.21333 0.99706 0.96975 0.96829 1.21346 0.96099 0.95485 0.99024 0.93972 0.78125 0.97022 0.95238 0.89586 0.88635 0.86332 0.89938 0.89462 0.87674 0.73962 0.86439 0.86536 0.83893 0.82814 0.84726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -70.15 13.97 21.65 0.30 -69.85 16 2 C -0.07 -4.49 5.50 84.86 0.47 -4.02 16 3 Si 0.96 54.60 25.85 68.60 1.77 56.37 16 4 H -0.24 -13.41 5.01 99.48 0.50 -12.91 16 5 H -0.28 -15.44 6.52 99.48 0.65 -14.79 16 6 H -0.32 -17.92 7.11 99.48 0.71 -17.22 16 7 C -0.22 -14.33 10.47 84.04 0.88 -13.45 16 8 H 0.05 3.31 8.06 -2.91 -0.02 3.29 16 9 N -0.75 -40.59 4.14 -343.45 -1.42 -42.01 16 10 C 0.15 6.11 5.60 86.38 0.48 6.60 16 11 C 0.13 3.98 3.05 45.34 0.14 4.12 16 12 H 0.05 1.85 8.09 -2.38 -0.02 1.83 16 13 C -0.12 -2.02 6.42 31.78 0.20 -1.82 16 14 C -0.12 -1.14 7.08 31.99 0.23 -0.91 16 15 C 0.07 0.99 5.28 86.85 0.46 1.45 16 16 N -0.61 -16.84 3.06 -792.05 -2.43 -19.26 16 17 C 0.58 20.77 7.31 86.62 0.63 21.40 16 18 O -0.54 -25.01 8.46 -4.07 -0.03 -25.04 16 19 C -0.30 -8.89 6.20 -18.78 -0.12 -9.01 16 20 C 0.13 2.08 10.31 84.27 0.87 2.94 16 21 N -0.44 -7.10 7.20 -56.42 -0.41 -7.50 16 22 H 0.46 2.96 8.96 -213.53 -1.91 1.05 16 23 N -0.30 -8.07 12.63 -44.52 -0.56 -8.63 16 24 C 0.15 5.05 6.93 44.07 0.31 5.35 16 25 C -0.04 -1.66 5.69 -20.05 -0.11 -1.77 16 26 C -0.07 -2.57 7.70 22.49 0.17 -2.40 16 27 C -0.14 -5.29 7.37 22.24 0.16 -5.12 16 28 C -0.12 -3.84 10.04 22.31 0.22 -3.61 16 29 C -0.13 -3.97 10.03 22.24 0.22 -3.75 16 30 C -0.10 -3.31 9.76 22.49 0.22 -3.09 16 31 H 0.25 17.07 8.31 -92.71 -0.77 16.30 16 32 H 0.38 20.71 3.03 -92.71 -0.28 20.42 16 33 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 34 H 0.03 1.21 8.06 -2.38 -0.02 1.20 16 35 H 0.09 1.43 7.85 -2.39 -0.02 1.41 16 36 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.12 0.42 8.14 -2.39 -0.02 0.40 16 38 H 0.08 0.76 8.14 -2.38 -0.02 0.74 16 39 H 0.09 0.91 8.03 -2.39 -0.02 0.89 16 40 H 0.11 0.79 5.33 -2.39 -0.01 0.78 16 41 H 0.24 1.41 4.81 -2.92 -0.01 1.39 16 42 H 0.12 4.87 5.97 -2.91 -0.02 4.85 16 43 H 0.12 4.23 7.71 -2.91 -0.02 4.20 16 44 H 0.14 3.85 8.06 -2.91 -0.02 3.83 16 45 H 0.15 3.53 8.06 -2.91 -0.02 3.51 16 46 H 0.13 3.91 8.06 -2.91 -0.02 3.88 16 Total: -1.00 -97.28 359.67 1.24 -96.04 By element: Atomic # 1 Polarization: 28.40 SS G_CDS: -1.43 Total: 26.98 kcal Atomic # 6 Polarization: -12.53 SS G_CDS: 5.44 Total: -7.09 kcal Atomic # 7 Polarization: -142.74 SS G_CDS: -4.52 Total: -147.26 kcal Atomic # 8 Polarization: -25.01 SS G_CDS: -0.03 Total: -25.04 kcal Atomic # 14 Polarization: 54.60 SS G_CDS: 1.77 Total: 56.37 kcal Total: -97.28 1.24 -96.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277910989.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.520 kcal (2) G-P(sol) polarization free energy of solvation -97.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.040 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.10 seconds