Wall clock time and date at job start Sat Apr 11 2020 06:03:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86808 * 120.00224 * 2 1 4 4 H 1.48496 * 109.46974 * 270.00249 * 3 2 1 5 5 H 1.48499 * 109.46750 * 29.99879 * 3 2 1 6 6 H 1.48499 * 109.47200 * 149.99974 * 3 2 1 7 7 C 1.37881 * 120.00126 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99650 * 0.02562 * 7 2 1 9 9 C 1.50703 * 120.00171 * 180.02562 * 7 2 1 10 10 N 1.46898 * 109.46821 * 179.97438 * 9 7 2 11 11 C 1.47767 * 110.99982 * 291.15196 * 10 9 7 12 12 C 1.54852 * 104.86575 * 214.30016 * 11 10 9 13 13 C 1.54773 * 101.50019 * 37.33930 * 12 11 10 14 14 H 1.09002 * 113.38086 * 85.64963 * 13 12 11 15 15 C 1.53518 * 109.67859 * 212.72737 * 13 12 11 16 16 N 1.46660 * 107.04327 * 84.12176 * 15 13 12 17 17 C 1.34774 * 125.28773 * 197.39831 * 16 15 13 18 18 O 1.21594 * 119.99976 * 174.71560 * 17 16 15 19 19 C 1.47520 * 120.00269 * 354.71573 * 17 16 15 20 20 C 1.39441 * 120.24856 * 321.77552 * 19 17 16 21 21 C 1.38291 * 120.28357 * 179.78482 * 20 19 17 22 22 C 1.37885 * 120.72226 * 0.47849 * 21 20 19 23 23 C 1.39675 * 120.11106 * 359.78166 * 22 21 20 24 24 N 1.35848 * 133.51356 * 179.97438 * 23 22 21 25 25 C 1.30085 * 109.54014 * 179.97438 * 24 23 22 26 26 N 1.36125 * 110.04702 * 0.02562 * 25 24 23 27 27 H 0.97001 * 126.30749 * 180.02562 * 26 25 24 28 28 C 1.37513 * 107.38149 * 359.97438 * 26 25 24 29 29 C 1.46493 * 109.42000 * 17.39736 * 16 15 13 30 30 C 1.47679 * 110.99571 * 169.99849 * 10 9 7 31 31 H 1.08998 * 112.73242 * 358.56944 * 30 10 9 32 32 H 0.97005 * 119.99881 * 359.97438 * 1 2 3 33 33 H 1.08997 * 109.46945 * 60.00042 * 9 7 2 34 34 H 1.09003 * 109.46944 * 300.00302 * 9 7 2 35 35 H 1.08995 * 110.36066 * 333.15689 * 11 10 9 36 36 H 1.08998 * 110.35736 * 95.35646 * 11 10 9 37 37 H 1.09005 * 111.07111 * 279.27052 * 12 11 10 38 38 H 1.08995 * 110.98464 * 155.37525 * 12 11 10 39 39 H 1.09006 * 109.92220 * 324.77481 * 15 13 12 40 40 H 1.09006 * 110.09018 * 203.56067 * 15 13 12 41 41 H 1.07994 * 119.85866 * 0.02562 * 20 19 17 42 42 H 1.07998 * 119.63742 * 180.25919 * 21 20 19 43 43 H 1.07998 * 119.94187 * 179.76629 * 22 21 20 44 44 H 1.08005 * 124.97925 * 180.02562 * 25 24 23 45 45 H 1.08997 * 109.71259 * 117.78415 * 29 16 15 46 46 H 1.09003 * 109.71498 * 238.38710 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5116 -1.1941 0.0011 10 7 4.0011 -2.5791 0.0022 11 6 3.7078 -3.2434 1.2891 12 6 4.9060 -4.1949 1.5273 13 6 6.0837 -3.3499 0.9846 14 1 6.4985 -2.6624 1.7217 15 6 7.1442 -4.2749 0.3711 16 7 6.7244 -4.5565 -1.0056 17 6 7.1839 -5.5683 -1.7682 18 8 6.6996 -5.7715 -2.8649 19 6 8.2744 -6.4293 -1.2725 20 6 9.3263 -5.8792 -0.5409 21 6 10.3467 -6.6863 -0.0720 22 6 10.3467 -8.0414 -0.3270 23 6 9.3074 -8.6161 -1.0621 24 7 9.0367 -9.8850 -1.4646 25 6 7.9237 -9.8999 -2.1378 26 7 7.4068 -8.6428 -2.2125 27 1 6.5848 -8.3854 -2.6587 28 6 8.2638 -7.8054 -1.5380 29 6 5.7279 -3.5671 -1.4230 30 6 5.4577 -2.6256 -0.2366 31 1 5.8907 -1.6376 -0.3927 32 1 -0.4850 0.8401 0.0004 33 1 3.8745 -0.6801 0.8911 34 1 3.8752 -0.6804 -0.8888 35 1 3.6432 -2.5069 2.0900 36 1 2.7793 -3.8102 1.2203 37 1 4.7926 -5.1179 0.9585 38 1 5.0325 -4.4051 2.5893 39 1 7.2007 -5.2034 0.9393 40 1 8.1160 -3.7811 0.3693 41 1 9.3423 -4.8190 -0.3362 42 1 11.1542 -6.2499 0.4971 43 1 11.1519 -8.6593 0.0420 44 1 7.4754 -10.7806 -2.5736 45 1 6.1103 -2.9940 -2.2676 46 1 4.8054 -4.0724 -1.7090 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277936674.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:15 Heat of formation + Delta-G solvation = 61.168235 kcal Electronic energy + Delta-G solvation = -29360.965557 eV Core-core repulsion = 25444.424328 eV Total energy + Delta-G solvation = -3916.541229 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.47575 -40.61948 -38.78931 -37.30124 -35.61848 -33.42829 -32.93902 -31.53133 -30.93660 -29.83998 -29.22715 -28.46935 -26.14679 -24.80953 -23.19974 -22.70731 -22.13408 -21.77329 -20.52190 -19.89767 -19.67570 -18.09715 -17.87663 -16.84152 -16.70396 -16.20083 -15.96429 -15.46795 -15.32660 -15.09661 -14.58493 -14.40984 -14.14047 -13.93295 -13.84219 -13.53559 -13.15360 -12.81536 -12.61215 -12.44752 -12.35248 -12.23763 -12.09927 -11.93000 -11.82299 -11.24450 -11.04899 -10.86294 -10.70175 -10.62018 -10.58221 -10.48951 -10.36856 -9.99048 -9.85592 -9.35992 -8.79562 -8.68602 -8.62716 -8.46675 -7.57244 -6.10296 -4.08321 0.33118 1.15361 2.22216 2.64123 2.75685 2.90419 3.23589 3.30974 3.31484 3.53251 3.90022 4.15019 4.28092 4.36437 4.47760 4.53820 4.65238 4.67412 4.90506 4.97082 5.01859 5.03686 5.19305 5.26432 5.31691 5.34302 5.39323 5.44791 5.61207 5.61445 5.74174 5.88782 5.94128 6.00067 6.03413 6.05791 6.09108 6.24975 6.29098 6.42889 6.46436 6.52706 6.67466 6.85144 7.00314 7.38555 7.48197 7.49043 7.79158 7.84974 7.98250 8.57937 8.98854 9.50833 11.02892 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.023567 B = 0.002507 C = 0.002430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.795844 B =11164.760796 C =11519.579470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.069 3.931 3 Si 0.875 3.125 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.268 1.268 7 C -0.510 4.510 8 H 0.080 0.920 9 C 0.158 3.842 10 N -0.511 5.511 11 C 0.061 3.939 12 C -0.124 4.124 13 C -0.123 4.123 14 H 0.101 0.899 15 C 0.108 3.892 16 N -0.601 5.601 17 C 0.572 3.428 18 O -0.543 6.543 19 C -0.119 4.119 20 C -0.068 4.068 21 C -0.136 4.136 22 C -0.041 4.041 23 C 0.037 3.963 24 N -0.496 5.496 25 C 0.264 3.736 26 N -0.590 5.590 27 H 0.432 0.568 28 C 0.095 3.905 29 C 0.118 3.882 30 C 0.063 3.937 31 H 0.083 0.917 32 H 0.264 0.736 33 H -0.009 1.009 34 H 0.024 0.976 35 H 0.048 0.952 36 H 0.078 0.922 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.077 0.923 40 H 0.068 0.932 41 H 0.139 0.861 42 H 0.137 0.863 43 H 0.134 0.866 44 H 0.219 0.781 45 H 0.065 0.935 46 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.104 -14.936 1.891 25.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.133 4.133 3 Si 0.702 3.298 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.193 1.193 7 C -0.548 4.548 8 H 0.098 0.902 9 C 0.031 3.969 10 N -0.234 5.234 11 C -0.066 4.066 12 C -0.162 4.162 13 C -0.143 4.143 14 H 0.120 0.880 15 C -0.015 4.015 16 N -0.333 5.333 17 C 0.361 3.639 18 O -0.422 6.422 19 C -0.125 4.125 20 C -0.088 4.088 21 C -0.157 4.157 22 C -0.060 4.060 23 C -0.081 4.081 24 N -0.215 5.215 25 C -0.023 4.023 26 N -0.200 5.200 27 H 0.272 0.728 28 C -0.019 4.019 29 C -0.004 4.004 30 C -0.047 4.047 31 H 0.102 0.898 32 H 0.074 0.926 33 H 0.009 0.991 34 H 0.042 0.958 35 H 0.067 0.933 36 H 0.096 0.904 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.095 0.905 40 H 0.086 0.914 41 H 0.157 0.843 42 H 0.155 0.845 43 H 0.152 0.848 44 H 0.236 0.764 45 H 0.083 0.917 46 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 20.967 -15.920 1.057 26.347 hybrid contribution -0.253 2.247 0.150 2.266 sum 20.714 -13.673 1.207 24.849 Atomic orbital electron populations 1.69890 1.06138 1.26873 1.50871 1.24907 0.94737 0.98840 0.94827 0.86874 0.80226 0.84089 0.78626 1.20113 1.21174 1.19322 1.20987 0.88590 0.94768 1.50470 0.90215 1.20382 0.97374 0.83980 0.95121 1.63482 1.08334 1.19781 1.31840 1.22849 0.97450 0.95768 0.90565 1.22765 0.94435 0.98532 1.00500 1.23194 0.95699 0.97288 0.98082 0.88040 1.22026 0.97531 0.99642 0.82350 1.48061 1.42088 1.28726 1.14461 1.17838 0.82296 0.79540 0.84264 1.90789 1.59648 1.70866 1.20868 1.18761 0.98431 0.90007 1.05269 1.21319 0.92536 1.00436 0.94464 1.20844 0.99560 0.92857 1.02409 1.20453 0.95902 0.94528 0.95146 1.19045 0.96415 0.89386 1.03291 1.70522 1.14777 1.20144 1.16089 1.25470 0.91400 0.88015 0.97445 1.43231 1.23361 1.07709 1.45742 0.72776 1.18577 0.93200 0.91686 0.98431 1.21968 0.92080 0.89454 0.96914 1.23141 0.90942 0.97550 0.93109 0.89849 0.92614 0.99092 0.95793 0.93329 0.90358 0.91077 0.91042 0.90470 0.91406 0.84327 0.84523 0.84827 0.76432 0.91689 0.89388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.17 13.96 55.43 0.77 -26.39 16 2 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 3 Si 0.87 20.93 27.47 -169.99 -4.67 16.26 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 6 H -0.27 -6.11 6.54 56.52 0.37 -5.74 16 7 C -0.51 -14.10 9.35 -34.44 -0.32 -14.42 16 8 H 0.08 2.42 8.00 -52.49 -0.42 2.00 16 9 C 0.16 3.63 3.48 -4.98 -0.02 3.61 16 10 N -0.51 -9.92 4.54 -223.63 -1.01 -10.93 16 11 C 0.06 1.07 6.12 -2.37 -0.01 1.05 16 12 C -0.12 -1.61 6.31 -24.82 -0.16 -1.77 16 13 C -0.12 -1.46 3.96 -88.27 -0.35 -1.81 16 14 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 15 C 0.11 1.09 4.61 -3.69 -0.02 1.07 16 16 N -0.60 -7.86 3.31 -173.95 -0.57 -8.43 16 17 C 0.57 8.07 7.46 -12.48 -0.09 7.97 16 18 O -0.54 -9.34 16.76 5.28 0.09 -9.25 16 19 C -0.12 -1.40 5.40 -104.95 -0.57 -1.97 16 20 C -0.07 -0.61 8.34 -39.11 -0.33 -0.94 16 21 C -0.14 -1.04 9.99 -39.69 -0.40 -1.43 16 22 C -0.04 -0.37 10.09 -39.17 -0.40 -0.77 16 23 C 0.04 0.42 7.22 -84.72 -0.61 -0.19 16 24 N -0.50 -5.62 11.28 -12.05 -0.14 -5.76 16 25 C 0.26 2.24 12.97 -89.72 -1.16 1.08 16 26 N -0.59 -5.93 6.13 -11.56 -0.07 -6.00 16 27 H 0.43 3.98 8.57 -40.82 -0.35 3.63 16 28 C 0.09 1.13 6.89 -83.77 -0.58 0.55 16 29 C 0.12 1.81 6.50 -3.60 -0.02 1.78 16 30 C 0.06 0.96 3.58 -65.69 -0.24 0.72 16 31 H 0.08 1.25 7.71 -51.93 -0.40 0.84 16 32 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 33 H -0.01 -0.20 6.91 -51.93 -0.36 -0.56 16 34 H 0.02 0.56 7.46 -51.93 -0.39 0.17 16 35 H 0.05 0.88 7.62 -51.93 -0.40 0.49 16 36 H 0.08 1.47 8.14 -51.93 -0.42 1.04 16 37 H 0.07 0.97 7.93 -51.93 -0.41 0.56 16 38 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.08 0.72 7.48 -51.93 -0.39 0.33 16 40 H 0.07 0.53 6.43 -51.93 -0.33 0.20 16 41 H 0.14 1.00 5.69 -52.49 -0.30 0.71 16 42 H 0.14 0.63 8.06 -52.49 -0.42 0.21 16 43 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 44 H 0.22 0.77 8.06 -52.48 -0.42 0.34 16 45 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 46 H 0.09 1.57 7.86 -51.93 -0.41 1.16 16 LS Contribution 368.64 15.07 5.56 5.56 Total: -1.00 -34.79 368.64 -11.69 -46.48 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: -6.28 Total: 2.07 kcal Atomic # 6 Polarization: 1.77 SS G_CDS: -5.36 Total: -3.59 kcal Atomic # 7 Polarization: -56.50 SS G_CDS: -1.02 Total: -57.52 kcal Atomic # 8 Polarization: -9.34 SS G_CDS: 0.09 Total: -9.25 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -4.67 Total: 16.26 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -34.79 -11.69 -46.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277936674.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.651 kcal (2) G-P(sol) polarization free energy of solvation -34.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.482 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds