Wall clock time and date at job start Sat Apr 11 2020 06:03:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86808 * 120.00224 * 2 1 4 4 H 1.48496 * 109.46974 * 270.00249 * 3 2 1 5 5 H 1.48499 * 109.46750 * 29.99879 * 3 2 1 6 6 H 1.48499 * 109.47200 * 149.99974 * 3 2 1 7 7 C 1.37881 * 120.00126 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99650 * 0.02562 * 7 2 1 9 9 C 1.50703 * 120.00171 * 180.02562 * 7 2 1 10 10 N 1.46898 * 109.46821 * 179.97438 * 9 7 2 11 11 C 1.47767 * 110.99982 * 291.15196 * 10 9 7 12 12 C 1.54852 * 104.86575 * 214.30016 * 11 10 9 13 13 C 1.54773 * 101.50019 * 37.33930 * 12 11 10 14 14 H 1.09002 * 113.38086 * 85.64963 * 13 12 11 15 15 C 1.53518 * 109.67859 * 212.72737 * 13 12 11 16 16 N 1.46660 * 107.04327 * 84.12176 * 15 13 12 17 17 C 1.34774 * 125.28773 * 197.39831 * 16 15 13 18 18 O 1.21594 * 119.99976 * 174.71560 * 17 16 15 19 19 C 1.47520 * 120.00269 * 354.71573 * 17 16 15 20 20 C 1.39441 * 120.24856 * 321.77552 * 19 17 16 21 21 C 1.38291 * 120.28357 * 179.78482 * 20 19 17 22 22 C 1.37885 * 120.72226 * 0.47849 * 21 20 19 23 23 C 1.39675 * 120.11106 * 359.78166 * 22 21 20 24 24 N 1.35848 * 133.51356 * 179.97438 * 23 22 21 25 25 C 1.30085 * 109.54014 * 179.97438 * 24 23 22 26 26 N 1.36125 * 110.04702 * 0.02562 * 25 24 23 27 27 H 0.97001 * 126.30749 * 180.02562 * 26 25 24 28 28 C 1.37513 * 107.38149 * 359.97438 * 26 25 24 29 29 C 1.46493 * 109.42000 * 17.39736 * 16 15 13 30 30 C 1.47679 * 110.99571 * 169.99849 * 10 9 7 31 31 H 1.08998 * 112.73242 * 358.56944 * 30 10 9 32 32 H 0.97005 * 119.99881 * 359.97438 * 1 2 3 33 33 H 1.08997 * 109.46945 * 60.00042 * 9 7 2 34 34 H 1.09003 * 109.46944 * 300.00302 * 9 7 2 35 35 H 1.08995 * 110.36066 * 333.15689 * 11 10 9 36 36 H 1.08998 * 110.35736 * 95.35646 * 11 10 9 37 37 H 1.09005 * 111.07111 * 279.27052 * 12 11 10 38 38 H 1.08995 * 110.98464 * 155.37525 * 12 11 10 39 39 H 1.09006 * 109.92220 * 324.77481 * 15 13 12 40 40 H 1.09006 * 110.09018 * 203.56067 * 15 13 12 41 41 H 1.07994 * 119.85866 * 0.02562 * 20 19 17 42 42 H 1.07998 * 119.63742 * 180.25919 * 21 20 19 43 43 H 1.07998 * 119.94187 * 179.76629 * 22 21 20 44 44 H 1.08005 * 124.97925 * 180.02562 * 25 24 23 45 45 H 1.08997 * 109.71259 * 117.78415 * 29 16 15 46 46 H 1.09003 * 109.71498 * 238.38710 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5116 -1.1941 0.0011 10 7 4.0011 -2.5791 0.0022 11 6 3.7078 -3.2434 1.2891 12 6 4.9060 -4.1949 1.5273 13 6 6.0837 -3.3499 0.9846 14 1 6.4985 -2.6624 1.7217 15 6 7.1442 -4.2749 0.3711 16 7 6.7244 -4.5565 -1.0056 17 6 7.1839 -5.5683 -1.7682 18 8 6.6996 -5.7715 -2.8649 19 6 8.2744 -6.4293 -1.2725 20 6 9.3263 -5.8792 -0.5409 21 6 10.3467 -6.6863 -0.0720 22 6 10.3467 -8.0414 -0.3270 23 6 9.3074 -8.6161 -1.0621 24 7 9.0367 -9.8850 -1.4646 25 6 7.9237 -9.8999 -2.1378 26 7 7.4068 -8.6428 -2.2125 27 1 6.5848 -8.3854 -2.6587 28 6 8.2638 -7.8054 -1.5380 29 6 5.7279 -3.5671 -1.4230 30 6 5.4577 -2.6256 -0.2366 31 1 5.8907 -1.6376 -0.3927 32 1 -0.4850 0.8401 0.0004 33 1 3.8745 -0.6801 0.8911 34 1 3.8752 -0.6804 -0.8888 35 1 3.6432 -2.5069 2.0900 36 1 2.7793 -3.8102 1.2203 37 1 4.7926 -5.1179 0.9585 38 1 5.0325 -4.4051 2.5893 39 1 7.2007 -5.2034 0.9393 40 1 8.1160 -3.7811 0.3693 41 1 9.3423 -4.8190 -0.3362 42 1 11.1542 -6.2499 0.4971 43 1 11.1519 -8.6593 0.0420 44 1 7.4754 -10.7806 -2.5736 45 1 6.1103 -2.9940 -2.2676 46 1 4.8054 -4.0724 -1.7090 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277936674.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:10 Heat of formation + Delta-G solvation = 36.856870 kcal Electronic energy + Delta-G solvation = -29362.019777 eV Core-core repulsion = 25444.424328 eV Total energy + Delta-G solvation = -3917.595449 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 3.40 seconds Orbital eigenvalues (eV) -43.19278 -41.70757 -39.93617 -38.04143 -36.92318 -34.86723 -34.16456 -33.02981 -31.85663 -30.61524 -30.21458 -29.88870 -27.69506 -25.75021 -24.12673 -23.74223 -23.34401 -22.70531 -21.83357 -20.96991 -20.76706 -19.00223 -18.81479 -18.62508 -17.62343 -17.39486 -16.76785 -16.56454 -16.19295 -16.13802 -15.98417 -15.70971 -15.27636 -15.14958 -14.84807 -14.58545 -14.43273 -14.24417 -13.98753 -13.69779 -13.47414 -13.17850 -13.04677 -12.96563 -12.86009 -12.76299 -12.36064 -12.06561 -11.88010 -11.84663 -11.82261 -11.71606 -11.69727 -11.48445 -11.42676 -10.89936 -10.79617 -9.76112 -9.45844 -9.22206 -9.09157 -8.29393 -6.33664 -0.39003 0.45849 1.34830 1.36556 1.39975 1.46769 1.77487 1.98347 2.00777 2.33661 2.80540 3.04115 3.07606 3.22901 3.38252 3.42831 3.60765 3.79844 3.93052 4.01922 4.13365 4.21447 4.27537 4.32541 4.34245 4.40217 4.42780 4.57880 4.64165 4.70567 4.76040 4.87197 4.88989 4.92946 4.93780 4.96198 5.04163 5.15792 5.19780 5.29195 5.35425 5.38345 5.44215 5.52936 5.80589 5.98835 6.26253 6.30263 6.40899 6.62073 6.73203 6.78721 6.94041 7.30394 8.87677 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.023567 B = 0.002507 C = 0.002430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.795844 B =11164.760796 C =11519.579470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.004 3.996 3 Si 0.951 3.049 4 H -0.268 1.268 5 H -0.283 1.283 6 H -0.242 1.242 7 C -0.518 4.518 8 H 0.029 0.971 9 C 0.171 3.829 10 N -0.537 5.537 11 C 0.058 3.942 12 C -0.111 4.111 13 C -0.108 4.108 14 H 0.134 0.866 15 C 0.108 3.892 16 N -0.599 5.599 17 C 0.569 3.431 18 O -0.588 6.588 19 C -0.141 4.141 20 C -0.057 4.057 21 C -0.123 4.123 22 C -0.045 4.045 23 C 0.014 3.986 24 N -0.527 5.527 25 C 0.272 3.728 26 N -0.597 5.597 27 H 0.432 0.568 28 C 0.068 3.932 29 C 0.125 3.875 30 C 0.060 3.940 31 H 0.096 0.904 32 H 0.266 0.734 33 H 0.000 1.000 34 H 0.027 0.973 35 H 0.042 0.958 36 H 0.046 0.954 37 H 0.060 0.940 38 H 0.102 0.898 39 H 0.093 0.907 40 H 0.107 0.893 41 H 0.162 0.838 42 H 0.177 0.823 43 H 0.152 0.848 44 H 0.260 0.740 45 H 0.062 0.938 46 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.562 -14.201 3.715 29.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.193 4.193 3 Si 0.774 3.226 4 H -0.193 1.193 5 H -0.209 1.209 6 H -0.165 1.165 7 C -0.556 4.556 8 H 0.048 0.952 9 C 0.044 3.956 10 N -0.261 5.261 11 C -0.070 4.070 12 C -0.149 4.149 13 C -0.128 4.128 14 H 0.151 0.849 15 C -0.014 4.014 16 N -0.330 5.330 17 C 0.360 3.640 18 O -0.470 6.470 19 C -0.148 4.148 20 C -0.076 4.076 21 C -0.143 4.143 22 C -0.064 4.064 23 C -0.104 4.104 24 N -0.247 5.247 25 C -0.015 4.015 26 N -0.207 5.207 27 H 0.272 0.728 28 C -0.046 4.046 29 C 0.002 3.998 30 C -0.050 4.050 31 H 0.114 0.886 32 H 0.075 0.925 33 H 0.018 0.982 34 H 0.045 0.955 35 H 0.060 0.940 36 H 0.064 0.936 37 H 0.078 0.922 38 H 0.121 0.879 39 H 0.111 0.889 40 H 0.125 0.875 41 H 0.180 0.820 42 H 0.194 0.806 43 H 0.170 0.830 44 H 0.276 0.724 45 H 0.080 0.920 46 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 25.462 -15.206 2.915 29.800 hybrid contribution -1.717 1.870 -0.447 2.578 sum 23.745 -13.336 2.467 27.345 Atomic orbital electron populations 1.70067 1.08348 1.28143 1.52609 1.25926 0.95629 1.03409 0.94289 0.85663 0.79593 0.78190 0.79178 1.19345 1.20898 1.16522 1.21256 0.91408 0.92979 1.49965 0.95221 1.20096 0.93998 0.86286 0.95267 1.63255 1.11782 1.17776 1.33273 1.22804 0.98415 0.96211 0.89554 1.22687 0.92750 0.97027 1.02401 1.23246 0.95317 0.97215 0.97008 0.84853 1.22275 0.98386 1.00378 0.80327 1.48073 1.41282 1.27976 1.15665 1.18298 0.82478 0.79481 0.83725 1.90754 1.61312 1.72001 1.22928 1.18720 0.98899 0.89641 1.07496 1.21645 0.91498 1.01648 0.92814 1.21259 0.99729 0.91956 1.01371 1.20867 0.95609 0.95628 0.94336 1.19490 0.97207 0.89512 1.04195 1.70518 1.16156 1.20423 1.17578 1.26321 0.90558 0.88563 0.96069 1.43370 1.23367 1.08193 1.45771 0.72830 1.18896 0.94043 0.92213 0.99415 1.21691 0.91247 0.89682 0.97221 1.23180 0.88446 0.98556 0.94787 0.88609 0.92472 0.98241 0.95543 0.93990 0.93559 0.92170 0.87915 0.88918 0.87513 0.82027 0.80562 0.83030 0.72396 0.91998 0.93240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.76 13.96 21.45 0.30 -59.46 16 2 C 0.00 0.26 5.47 84.66 0.46 0.72 16 3 Si 0.95 43.07 27.47 68.60 1.88 44.95 16 4 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 5 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 6 H -0.24 -9.85 6.54 99.48 0.65 -9.20 16 7 C -0.52 -29.85 9.35 25.60 0.24 -29.61 16 8 H 0.03 1.94 8.00 -2.91 -0.02 1.92 16 9 C 0.17 7.84 3.48 85.56 0.30 8.14 16 10 N -0.54 -21.15 4.54 -861.43 -3.91 -25.06 16 11 C 0.06 2.05 6.12 86.77 0.53 2.58 16 12 C -0.11 -2.66 6.31 31.83 0.20 -2.46 16 13 C -0.11 -2.16 3.96 -9.27 -0.04 -2.20 16 14 H 0.13 1.95 8.14 -2.39 -0.02 1.93 16 15 C 0.11 1.73 4.61 86.52 0.40 2.13 16 16 N -0.60 -14.79 3.31 -822.51 -2.72 -17.51 16 17 C 0.57 15.87 7.46 86.69 0.65 16.52 16 18 O -0.59 -21.06 16.76 -4.01 -0.07 -21.12 16 19 C -0.14 -3.13 5.40 -20.07 -0.11 -3.24 16 20 C -0.06 -0.80 8.34 22.57 0.19 -0.61 16 21 C -0.12 -1.33 9.99 22.20 0.22 -1.11 16 22 C -0.04 -0.69 10.09 22.53 0.23 -0.47 16 23 C 0.01 0.30 7.22 39.41 0.28 0.58 16 24 N -0.53 -11.53 11.28 -192.03 -2.17 -13.70 16 25 C 0.27 4.43 12.97 180.03 2.34 6.77 16 26 N -0.60 -12.14 6.13 -190.50 -1.17 -13.31 16 27 H 0.43 8.44 8.57 -92.71 -0.79 7.65 16 28 C 0.07 1.59 6.89 39.26 0.27 1.86 16 29 C 0.13 3.82 6.50 86.67 0.56 4.38 16 30 C 0.06 1.73 3.58 45.80 0.16 1.89 16 31 H 0.10 2.57 7.71 -2.39 -0.02 2.55 16 32 H 0.27 15.58 8.31 -92.70 -0.77 14.81 16 33 H 0.00 0.00 6.91 -2.39 -0.02 -0.02 16 34 H 0.03 1.20 7.46 -2.39 -0.02 1.18 16 35 H 0.04 1.52 7.62 -2.39 -0.02 1.51 16 36 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.06 1.59 7.93 -2.38 -0.02 1.57 16 38 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 39 H 0.09 1.30 7.48 -2.38 -0.02 1.28 16 40 H 0.11 0.99 6.43 -2.38 -0.02 0.97 16 41 H 0.16 1.45 5.69 -2.91 -0.02 1.43 16 42 H 0.18 0.52 8.06 -2.91 -0.02 0.49 16 43 H 0.15 1.69 8.06 -2.91 -0.02 1.66 16 44 H 0.26 1.42 8.06 -2.91 -0.02 1.39 16 45 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 46 H 0.05 1.88 7.86 -2.39 -0.02 1.86 16 Total: -1.00 -82.98 368.64 -0.79 -83.77 By element: Atomic # 1 Polarization: 15.39 SS G_CDS: 0.17 Total: 15.56 kcal Atomic # 6 Polarization: -1.02 SS G_CDS: 6.89 Total: 5.87 kcal Atomic # 7 Polarization: -119.37 SS G_CDS: -9.66 Total: -129.03 kcal Atomic # 8 Polarization: -21.06 SS G_CDS: -0.07 Total: -21.12 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 1.88 Total: 44.95 kcal Total: -82.98 -0.79 -83.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277936674.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.629 kcal (2) G-P(sol) polarization free energy of solvation -82.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.772 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.41 seconds