Wall clock time and date at job start Sat Apr 11 2020 06:03:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86802 * 120.00013 * 2 1 4 4 H 1.48498 * 109.46896 * 270.00254 * 3 2 1 5 5 H 1.48500 * 109.46988 * 30.00170 * 3 2 1 6 6 H 1.48497 * 109.46894 * 150.00422 * 3 2 1 7 7 C 1.37878 * 119.99959 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00092 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99838 * 359.97438 * 7 2 1 10 10 N 1.46907 * 109.47008 * 175.37133 * 9 7 2 11 11 C 1.46963 * 110.99841 * 60.12923 * 10 9 7 12 12 C 1.55882 * 108.80682 * 180.02562 * 11 10 9 13 13 H 1.09000 * 112.63516 * 187.26693 * 12 11 10 14 14 C 1.54701 * 108.33261 * 312.92601 * 12 11 10 15 15 C 1.53776 * 104.73882 * 86.56752 * 14 12 11 16 16 C 1.54700 * 104.74217 * 359.97438 * 15 14 12 17 17 H 1.09005 * 112.38480 * 147.65270 * 16 15 14 18 18 C 1.46967 * 110.99632 * 295.37815 * 10 9 7 19 19 N 1.48436 * 104.03354 * 25.77951 * 16 15 14 20 20 C 1.34779 * 128.44831 * 137.18643 * 19 16 15 21 21 O 1.21584 * 120.00071 * 4.78510 * 20 19 16 22 22 C 1.47526 * 119.99620 * 184.78650 * 20 19 16 23 23 C 1.39440 * 120.25110 * 320.15749 * 22 20 19 24 24 C 1.38281 * 120.27866 * 179.70296 * 23 22 20 25 25 C 1.37881 * 120.73204 * 0.28143 * 24 23 22 26 26 C 1.39673 * 120.10881 * 359.97438 * 25 24 23 27 27 N 1.35855 * 133.51912 * 179.97438 * 26 25 24 28 28 C 1.30087 * 109.54025 * 180.02562 * 27 26 25 29 29 N 1.36126 * 110.04939 * 0.02562 * 28 27 26 30 30 H 0.97001 * 126.31097 * 179.97438 * 29 28 27 31 31 C 1.37516 * 107.38137 * 359.97438 * 29 28 27 32 32 H 0.97000 * 119.99544 * 359.97438 * 1 2 3 33 33 H 1.08994 * 109.47224 * 55.36891 * 9 7 2 34 34 H 1.08999 * 109.47199 * 295.36888 * 9 7 2 35 35 H 1.08999 * 109.55662 * 300.22640 * 11 10 9 36 36 H 1.08999 * 109.55855 * 60.44244 * 11 10 9 37 37 H 1.09003 * 110.40281 * 205.22808 * 14 12 11 38 38 H 1.08998 * 110.40412 * 327.54218 * 14 12 11 39 39 H 1.08995 * 110.45501 * 241.11960 * 15 14 12 40 40 H 1.09004 * 110.24680 * 118.77234 * 15 14 12 41 41 H 1.08999 * 109.55623 * 59.77383 * 18 10 9 42 42 H 1.09002 * 109.55995 * 299.45237 * 18 10 9 43 43 H 1.07997 * 119.85716 * 359.97438 * 23 22 20 44 44 H 1.08008 * 119.63374 * 180.29838 * 24 23 22 45 45 H 1.08008 * 119.94537 * 180.02562 * 25 24 23 46 46 H 1.07997 * 124.97536 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5468 1.4401 0.6999 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2017 -3.6134 -0.1129 11 6 3.1449 -3.6168 1.0141 12 6 4.1271 -4.8151 0.8439 13 1 4.7746 -4.9531 1.7099 14 6 3.3003 -6.0772 0.5021 15 6 3.1426 -6.0394 -1.0271 16 6 3.8881 -4.7576 -1.4681 17 1 4.3455 -4.8611 -2.4521 18 6 2.9018 -3.5801 -1.4047 19 7 4.8925 -4.5389 -0.3972 20 6 6.1863 -4.1824 -0.5219 21 8 6.6401 -3.9138 -1.6175 22 6 7.0518 -4.1180 0.6711 23 6 6.5579 -3.6065 1.8705 24 6 7.3668 -3.5515 2.9907 25 6 8.6717 -3.9941 2.9400 26 6 9.1921 -4.5059 1.7491 27 7 10.4057 -5.0045 1.3966 28 6 10.3846 -5.3560 0.1443 29 7 9.1577 -5.1062 -0.3899 30 1 8.8836 -5.2776 -1.3045 31 6 8.3783 -4.5660 0.6060 32 1 -0.4849 0.8401 0.0004 33 1 0.5633 -2.5216 -0.8458 34 1 0.6884 -2.5938 0.9282 35 1 3.7011 -2.6795 1.0272 36 1 2.5958 -3.7283 1.9491 37 1 3.8373 -6.9765 0.8038 38 1 2.3257 -6.0363 0.9885 39 1 2.0891 -5.9788 -1.3000 40 1 3.6022 -6.9201 -1.4756 41 1 3.4471 -2.6412 -1.5000 42 1 2.1775 -3.6671 -2.2146 43 1 5.5380 -3.2559 1.9260 44 1 6.9720 -3.1578 3.9158 45 1 9.2922 -3.9457 3.8227 46 1 11.2183 -5.7834 -0.3929 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277936728.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:24 Heat of formation + Delta-G solvation = 62.397620 kcal Electronic energy + Delta-G solvation = -30451.950553 eV Core-core repulsion = 26535.462634 eV Total energy + Delta-G solvation = -3916.487919 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.33079 -40.61772 -38.28273 -37.11153 -35.00263 -33.31745 -32.34397 -31.70182 -30.93424 -29.99731 -29.42419 -27.46483 -25.23394 -24.15198 -23.93873 -22.74764 -22.34366 -21.64516 -20.66062 -20.42425 -18.67462 -17.89843 -17.61573 -16.70954 -16.43835 -15.92590 -15.43192 -15.33148 -15.17430 -14.77990 -14.57021 -14.15743 -13.87715 -13.80640 -13.48515 -13.20026 -13.17787 -12.69616 -12.52720 -12.28455 -12.10601 -12.01224 -11.86282 -11.36017 -11.22839 -10.99746 -10.90217 -10.80336 -10.76474 -10.71916 -10.46670 -10.30167 -10.02710 -10.00581 -9.74225 -9.70719 -8.63428 -8.49754 -8.46500 -8.27796 -7.30173 -6.10006 -4.19253 0.52420 1.32456 2.38775 2.76973 2.94076 3.03883 3.23911 3.31161 3.34615 3.70103 4.03627 4.34212 4.35753 4.62202 4.72553 4.86202 4.97663 4.99033 5.06140 5.10037 5.13687 5.19845 5.24657 5.33498 5.47149 5.55974 5.70333 5.76440 5.82310 5.85008 5.93274 6.11028 6.12364 6.23244 6.24767 6.27370 6.32477 6.45465 6.53293 6.60045 6.64090 6.68565 7.12420 7.14850 7.43392 7.61565 7.68962 7.81927 7.92022 8.12851 8.18643 8.20548 8.90373 9.48510 10.95020 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012561 B = 0.003820 C = 0.003360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2228.587634 B = 7329.013358 C = 8332.081537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.068 3.932 3 Si 0.886 3.114 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.552 4.552 8 H 0.055 0.945 9 C 0.188 3.812 10 N -0.533 5.533 11 C 0.052 3.948 12 C 0.113 3.887 13 H 0.102 0.898 14 C -0.111 4.111 15 C -0.112 4.112 16 C 0.131 3.869 17 H 0.095 0.905 18 C 0.055 3.945 19 N -0.605 5.605 20 C 0.579 3.421 21 O -0.553 6.553 22 C -0.117 4.117 23 C -0.067 4.067 24 C -0.133 4.133 25 C -0.043 4.043 26 C 0.035 3.965 27 N -0.495 5.495 28 C 0.259 3.741 29 N -0.591 5.591 30 H 0.430 0.570 31 C 0.094 3.906 32 H 0.263 0.737 33 H 0.035 0.965 34 H 0.031 0.969 35 H 0.048 0.952 36 H 0.078 0.922 37 H 0.056 0.944 38 H 0.089 0.911 39 H 0.088 0.912 40 H 0.055 0.945 41 H 0.047 0.953 42 H 0.076 0.924 43 H 0.144 0.856 44 H 0.139 0.861 45 H 0.134 0.866 46 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.632 -14.142 2.862 19.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.135 4.135 3 Si 0.714 3.286 4 H -0.206 1.206 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.591 4.591 8 H 0.073 0.927 9 C 0.063 3.937 10 N -0.257 5.257 11 C -0.078 4.078 12 C 0.009 3.991 13 H 0.120 0.880 14 C -0.149 4.149 15 C -0.150 4.150 16 C 0.028 3.972 17 H 0.113 0.887 18 C -0.075 4.075 19 N -0.337 5.337 20 C 0.368 3.632 21 O -0.433 6.433 22 C -0.123 4.123 23 C -0.087 4.087 24 C -0.153 4.153 25 C -0.063 4.063 26 C -0.082 4.082 27 N -0.215 5.215 28 C -0.028 4.028 29 N -0.202 5.202 30 H 0.269 0.731 31 C -0.019 4.019 32 H 0.073 0.927 33 H 0.053 0.947 34 H 0.049 0.951 35 H 0.067 0.933 36 H 0.096 0.904 37 H 0.075 0.925 38 H 0.107 0.893 39 H 0.107 0.893 40 H 0.074 0.926 41 H 0.065 0.935 42 H 0.095 0.905 43 H 0.161 0.839 44 H 0.157 0.843 45 H 0.151 0.849 46 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 14.234 -14.335 2.895 20.408 hybrid contribution 0.152 1.951 -1.134 2.262 sum 14.385 -12.384 1.762 19.063 Atomic orbital electron populations 1.69934 1.05972 1.26920 1.49918 1.24924 0.94728 0.99086 0.94752 0.86689 0.79957 0.83709 0.78275 1.20623 1.21035 1.19942 1.21706 0.93215 0.92124 1.52037 0.92657 1.19736 0.90710 0.85264 0.98001 1.62522 1.16454 1.46709 1.00060 1.22844 0.93878 0.95226 0.95840 1.23396 0.91889 0.96408 0.87392 0.88036 1.22234 1.00671 0.95473 0.96512 1.22271 1.01485 0.95520 0.95731 1.22592 0.87256 0.95988 0.91331 0.88689 1.22378 0.95516 0.95912 0.93664 1.49268 1.08266 1.66030 1.10124 1.17763 0.80331 0.76832 0.88253 1.90751 1.74113 1.50672 1.27785 1.18763 0.91070 1.07295 0.95180 1.21482 1.00534 0.96082 0.90598 1.20895 0.93348 1.02119 0.98983 1.20438 0.94925 0.95597 0.95316 1.19015 0.90326 1.04887 0.94021 1.70499 1.21121 1.18102 1.11730 1.25402 0.88104 0.98742 0.90575 1.43166 1.11466 1.52316 1.13233 0.73052 1.18549 0.92649 1.00809 0.89916 0.92745 0.94663 0.95139 0.93347 0.90389 0.92536 0.89286 0.89306 0.92637 0.93475 0.90521 0.83861 0.84347 0.84861 0.76605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.42 13.29 55.43 0.74 -24.68 16 2 C 0.07 1.87 5.46 -17.82 -0.10 1.77 16 3 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 7 C -0.55 -14.57 7.59 -34.44 -0.26 -14.83 16 8 H 0.06 1.49 5.89 -52.48 -0.31 1.18 16 9 C 0.19 4.50 5.13 -4.97 -0.03 4.48 16 10 N -0.53 -10.16 3.90 -233.57 -0.91 -11.08 16 11 C 0.05 0.88 4.44 -2.25 -0.01 0.87 16 12 C 0.11 1.54 3.15 -64.44 -0.20 1.34 16 13 H 0.10 1.22 5.64 -51.93 -0.29 0.92 16 14 C -0.11 -1.35 6.14 -25.43 -0.16 -1.51 16 15 C -0.11 -1.43 6.13 -25.43 -0.16 -1.59 16 16 C 0.13 2.03 4.14 -65.59 -0.27 1.76 16 17 H 0.10 1.47 7.98 -51.93 -0.41 1.05 16 18 C 0.05 1.01 4.84 -3.41 -0.02 1.00 16 19 N -0.61 -9.43 2.74 -152.79 -0.42 -9.85 16 20 C 0.58 9.71 7.55 -12.47 -0.09 9.62 16 21 O -0.55 -10.67 16.92 5.29 0.09 -10.58 16 22 C -0.12 -1.73 5.57 -104.94 -0.58 -2.31 16 23 C -0.07 -0.87 7.78 -39.12 -0.30 -1.18 16 24 C -0.13 -1.45 9.99 -39.70 -0.40 -1.85 16 25 C -0.04 -0.50 10.09 -39.18 -0.40 -0.89 16 26 C 0.04 0.48 7.22 -84.71 -0.61 -0.13 16 27 N -0.49 -6.33 11.28 -12.05 -0.14 -6.47 16 28 C 0.26 2.50 12.97 -89.72 -1.16 1.34 16 29 N -0.59 -6.69 6.15 -11.56 -0.07 -6.77 16 30 H 0.43 4.33 8.65 -40.82 -0.35 3.98 16 31 C 0.09 1.31 6.89 -83.76 -0.58 0.74 16 32 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 33 H 0.04 0.92 8.13 -51.93 -0.42 0.50 16 34 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.05 0.95 5.73 -51.93 -0.30 0.65 16 36 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.09 1.10 7.88 -51.93 -0.41 0.69 16 39 H 0.09 1.16 7.84 -51.93 -0.41 0.76 16 40 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.05 1.04 6.86 -51.93 -0.36 0.68 16 42 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 43 H 0.14 1.86 5.22 -52.49 -0.27 1.59 16 44 H 0.14 1.13 8.06 -52.48 -0.42 0.70 16 45 H 0.13 1.24 8.06 -52.48 -0.42 0.82 16 46 H 0.22 0.95 8.06 -52.49 -0.42 0.53 16 LS Contribution 363.23 15.07 5.47 5.47 Total: -1.00 -32.88 363.23 -11.64 -44.52 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: -6.05 Total: 4.51 kcal Atomic # 6 Polarization: 3.93 SS G_CDS: -5.32 Total: -1.39 kcal Atomic # 7 Polarization: -58.05 SS G_CDS: -0.80 Total: -58.85 kcal Atomic # 8 Polarization: -10.67 SS G_CDS: 0.09 Total: -10.58 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.88 -11.64 -44.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277936728.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.918 kcal (2) G-P(sol) polarization free energy of solvation -32.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.521 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds