Wall clock time and date at job start Sat Apr 11 2020 06:03:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86802 * 120.00013 * 2 1 4 4 H 1.48498 * 109.46896 * 270.00254 * 3 2 1 5 5 H 1.48500 * 109.46988 * 30.00170 * 3 2 1 6 6 H 1.48497 * 109.46894 * 150.00422 * 3 2 1 7 7 C 1.37878 * 119.99959 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00092 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99838 * 359.97438 * 7 2 1 10 10 N 1.46907 * 109.47008 * 175.37133 * 9 7 2 11 11 C 1.46963 * 110.99841 * 60.12923 * 10 9 7 12 12 C 1.55882 * 108.80682 * 180.02562 * 11 10 9 13 13 H 1.09000 * 112.63516 * 187.26693 * 12 11 10 14 14 C 1.54701 * 108.33261 * 312.92601 * 12 11 10 15 15 C 1.53776 * 104.73882 * 86.56752 * 14 12 11 16 16 C 1.54700 * 104.74217 * 359.97438 * 15 14 12 17 17 H 1.09005 * 112.38480 * 147.65270 * 16 15 14 18 18 C 1.46967 * 110.99632 * 295.37815 * 10 9 7 19 19 N 1.48436 * 104.03354 * 25.77951 * 16 15 14 20 20 C 1.34779 * 128.44831 * 137.18643 * 19 16 15 21 21 O 1.21584 * 120.00071 * 4.78510 * 20 19 16 22 22 C 1.47526 * 119.99620 * 184.78650 * 20 19 16 23 23 C 1.39440 * 120.25110 * 320.15749 * 22 20 19 24 24 C 1.38281 * 120.27866 * 179.70296 * 23 22 20 25 25 C 1.37881 * 120.73204 * 0.28143 * 24 23 22 26 26 C 1.39673 * 120.10881 * 359.97438 * 25 24 23 27 27 N 1.35855 * 133.51912 * 179.97438 * 26 25 24 28 28 C 1.30087 * 109.54025 * 180.02562 * 27 26 25 29 29 N 1.36126 * 110.04939 * 0.02562 * 28 27 26 30 30 H 0.97001 * 126.31097 * 179.97438 * 29 28 27 31 31 C 1.37516 * 107.38137 * 359.97438 * 29 28 27 32 32 H 0.97000 * 119.99544 * 359.97438 * 1 2 3 33 33 H 1.08994 * 109.47224 * 55.36891 * 9 7 2 34 34 H 1.08999 * 109.47199 * 295.36888 * 9 7 2 35 35 H 1.08999 * 109.55662 * 300.22640 * 11 10 9 36 36 H 1.08999 * 109.55855 * 60.44244 * 11 10 9 37 37 H 1.09003 * 110.40281 * 205.22808 * 14 12 11 38 38 H 1.08998 * 110.40412 * 327.54218 * 14 12 11 39 39 H 1.08995 * 110.45501 * 241.11960 * 15 14 12 40 40 H 1.09004 * 110.24680 * 118.77234 * 15 14 12 41 41 H 1.08999 * 109.55623 * 59.77383 * 18 10 9 42 42 H 1.09002 * 109.55995 * 299.45237 * 18 10 9 43 43 H 1.07997 * 119.85716 * 359.97438 * 23 22 20 44 44 H 1.08008 * 119.63374 * 180.29838 * 24 23 22 45 45 H 1.08008 * 119.94537 * 180.02562 * 25 24 23 46 46 H 1.07997 * 124.97536 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5468 1.4401 0.6999 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2017 -3.6134 -0.1129 11 6 3.1449 -3.6168 1.0141 12 6 4.1271 -4.8151 0.8439 13 1 4.7746 -4.9531 1.7099 14 6 3.3003 -6.0772 0.5021 15 6 3.1426 -6.0394 -1.0271 16 6 3.8881 -4.7576 -1.4681 17 1 4.3455 -4.8611 -2.4521 18 6 2.9018 -3.5801 -1.4047 19 7 4.8925 -4.5389 -0.3972 20 6 6.1863 -4.1824 -0.5219 21 8 6.6401 -3.9138 -1.6175 22 6 7.0518 -4.1180 0.6711 23 6 6.5579 -3.6065 1.8705 24 6 7.3668 -3.5515 2.9907 25 6 8.6717 -3.9941 2.9400 26 6 9.1921 -4.5059 1.7491 27 7 10.4057 -5.0045 1.3966 28 6 10.3846 -5.3560 0.1443 29 7 9.1577 -5.1062 -0.3899 30 1 8.8836 -5.2776 -1.3045 31 6 8.3783 -4.5660 0.6060 32 1 -0.4849 0.8401 0.0004 33 1 0.5633 -2.5216 -0.8458 34 1 0.6884 -2.5938 0.9282 35 1 3.7011 -2.6795 1.0272 36 1 2.5958 -3.7283 1.9491 37 1 3.8373 -6.9765 0.8038 38 1 2.3257 -6.0363 0.9885 39 1 2.0891 -5.9788 -1.3000 40 1 3.6022 -6.9201 -1.4756 41 1 3.4471 -2.6412 -1.5000 42 1 2.1775 -3.6671 -2.2146 43 1 5.5380 -3.2559 1.9260 44 1 6.9720 -3.1578 3.9158 45 1 9.2922 -3.9457 3.8227 46 1 11.2183 -5.7834 -0.3929 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277936728.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:19 Heat of formation + Delta-G solvation = 41.753510 kcal Electronic energy + Delta-G solvation = -30452.845749 eV Core-core repulsion = 26535.462634 eV Total energy + Delta-G solvation = -3917.383114 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 4.58 seconds Orbital eigenvalues (eV) -43.22710 -41.88623 -39.58094 -38.09946 -36.65710 -34.37711 -34.20118 -32.86729 -32.20471 -30.96357 -30.36212 -29.26976 -26.81300 -25.49432 -25.19976 -23.76704 -23.51207 -22.84632 -22.00450 -21.53238 -19.92682 -19.02580 -18.76824 -18.28402 -17.71139 -17.15379 -16.75200 -16.47029 -16.31085 -16.19039 -15.89443 -15.41433 -15.16070 -15.08401 -14.74571 -14.51415 -14.33101 -14.26829 -13.97147 -13.78395 -13.14516 -13.07813 -13.01342 -12.87801 -12.77808 -12.66607 -12.51163 -12.23673 -12.08199 -11.83822 -11.81794 -11.78278 -11.68005 -11.46646 -11.19683 -10.89628 -10.63865 -9.81740 -9.49826 -9.25811 -9.06406 -8.19606 -6.37548 -0.43092 0.39164 1.29707 1.32412 1.37823 1.41060 1.76980 1.92164 1.97502 2.32214 2.74042 3.05621 3.18238 3.24960 3.35780 3.68475 3.75312 3.86304 3.92919 3.96877 4.02033 4.22456 4.26514 4.28903 4.37942 4.42136 4.52747 4.68805 4.69522 4.70419 4.86890 4.90654 5.00527 5.06204 5.09734 5.15136 5.21589 5.27205 5.29880 5.32917 5.34753 5.37320 5.56966 5.71537 5.73611 5.99982 6.16418 6.32566 6.45351 6.49127 6.76544 6.82914 6.91976 7.33507 8.82210 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012561 B = 0.003820 C = 0.003360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2228.587634 B = 7329.013358 C = 8332.081537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.021 3.979 3 Si 0.944 3.056 4 H -0.281 1.281 5 H -0.275 1.275 6 H -0.273 1.273 7 C -0.554 4.554 8 H 0.045 0.955 9 C 0.202 3.798 10 N -0.518 5.518 11 C 0.051 3.949 12 C 0.123 3.877 13 H 0.126 0.874 14 C -0.105 4.105 15 C -0.103 4.103 16 C 0.132 3.868 17 H 0.094 0.906 18 C 0.060 3.940 19 N -0.607 5.607 20 C 0.574 3.426 21 O -0.588 6.588 22 C -0.138 4.138 23 C -0.072 4.072 24 C -0.125 4.125 25 C -0.042 4.042 26 C 0.019 3.981 27 N -0.525 5.525 28 C 0.278 3.722 29 N -0.593 5.593 30 H 0.433 0.567 31 C 0.072 3.928 32 H 0.266 0.734 33 H 0.009 0.991 34 H 0.016 0.984 35 H 0.019 0.981 36 H 0.088 0.912 37 H 0.084 0.916 38 H 0.091 0.909 39 H 0.087 0.913 40 H 0.079 0.921 41 H 0.004 0.996 42 H 0.075 0.925 43 H 0.139 0.861 44 H 0.170 0.830 45 H 0.157 0.843 46 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.425 -15.670 4.113 22.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.180 4.180 3 Si 0.769 3.231 4 H -0.207 1.207 5 H -0.200 1.200 6 H -0.198 1.198 7 C -0.593 4.593 8 H 0.063 0.937 9 C 0.075 3.925 10 N -0.242 5.242 11 C -0.078 4.078 12 C 0.021 3.979 13 H 0.144 0.856 14 C -0.144 4.144 15 C -0.142 4.142 16 C 0.029 3.971 17 H 0.112 0.888 18 C -0.070 4.070 19 N -0.338 5.338 20 C 0.365 3.635 21 O -0.471 6.471 22 C -0.144 4.144 23 C -0.092 4.092 24 C -0.145 4.145 25 C -0.061 4.061 26 C -0.098 4.098 27 N -0.245 5.245 28 C -0.009 4.009 29 N -0.204 5.204 30 H 0.274 0.726 31 C -0.042 4.042 32 H 0.075 0.925 33 H 0.027 0.973 34 H 0.034 0.966 35 H 0.037 0.963 36 H 0.107 0.893 37 H 0.102 0.898 38 H 0.110 0.890 39 H 0.105 0.895 40 H 0.097 0.903 41 H 0.022 0.978 42 H 0.093 0.907 43 H 0.156 0.844 44 H 0.187 0.813 45 H 0.174 0.826 46 H 0.282 0.718 Dipole moment (debyes) X Y Z Total from point charges 16.022 -15.882 4.161 22.940 hybrid contribution -0.335 2.419 -1.547 2.891 sum 15.686 -13.463 2.614 20.836 Atomic orbital electron populations 1.70024 1.07139 1.27779 1.50981 1.25630 0.95489 1.02159 0.94682 0.85781 0.78864 0.80280 0.78125 1.20687 1.19999 1.19755 1.21914 0.92841 0.93377 1.51215 0.93665 1.19395 0.91058 0.86075 0.95938 1.62447 1.16684 1.43920 1.01125 1.22913 0.93904 0.95728 0.95301 1.23437 0.91322 0.95491 0.87690 0.85643 1.22265 1.00796 0.95423 0.95867 1.22247 1.01053 0.94522 0.96349 1.22548 0.86769 0.95915 0.91852 0.88778 1.22333 0.95699 0.95620 0.93347 1.49366 1.08153 1.65551 1.10707 1.18196 0.80724 0.76006 0.88566 1.90712 1.74872 1.52223 1.29263 1.18705 0.91405 1.09405 0.94875 1.21541 1.00690 0.96104 0.90865 1.21184 0.92874 1.01166 0.99300 1.20799 0.95303 0.94466 0.95564 1.19418 0.90684 1.05196 0.94545 1.70526 1.20966 1.19728 1.13315 1.26412 0.88305 0.96281 0.89897 1.43292 1.11786 1.52129 1.13170 0.72609 1.18731 0.92694 1.01700 0.91044 0.92534 0.97269 0.96621 0.96309 0.89331 0.89781 0.89033 0.89489 0.90275 0.97763 0.90683 0.84384 0.81300 0.82581 0.71794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.63 13.29 21.45 0.28 -53.35 16 2 C 0.02 1.14 5.46 84.65 0.46 1.61 16 3 Si 0.94 44.48 29.54 68.60 2.03 46.50 16 4 H -0.28 -13.20 7.11 99.48 0.71 -12.50 16 5 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 6 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 7 C -0.55 -30.26 7.59 25.60 0.19 -30.06 16 8 H 0.05 2.53 5.89 -2.91 -0.02 2.51 16 9 C 0.20 10.03 5.13 85.55 0.44 10.47 16 10 N -0.52 -20.20 3.90 -892.89 -3.48 -23.68 16 11 C 0.05 1.73 4.44 87.29 0.39 2.12 16 12 C 0.12 3.22 3.15 46.20 0.15 3.37 16 13 H 0.13 2.74 5.64 -2.39 -0.01 2.73 16 14 C -0.11 -2.29 6.14 31.44 0.19 -2.10 16 15 C -0.10 -2.44 6.13 31.44 0.19 -2.25 16 16 C 0.13 4.08 4.14 45.44 0.19 4.27 16 17 H 0.09 2.93 7.98 -2.38 -0.02 2.91 16 18 C 0.06 2.29 4.84 86.54 0.42 2.71 16 19 N -0.61 -18.78 2.74 -755.57 -2.07 -20.86 16 20 C 0.57 19.44 7.55 86.69 0.65 20.10 16 21 O -0.59 -23.25 16.92 -3.98 -0.07 -23.32 16 22 C -0.14 -4.02 5.57 -20.07 -0.11 -4.13 16 23 C -0.07 -1.81 7.78 22.57 0.18 -1.63 16 24 C -0.13 -2.46 9.99 22.20 0.22 -2.24 16 25 C -0.04 -0.88 10.09 22.53 0.23 -0.65 16 26 C 0.02 0.49 7.22 39.41 0.28 0.77 16 27 N -0.53 -12.42 11.28 -192.02 -2.17 -14.58 16 28 C 0.28 4.70 12.97 180.03 2.34 7.04 16 29 N -0.59 -12.71 6.15 -190.49 -1.17 -13.88 16 30 H 0.43 8.41 8.65 -92.71 -0.80 7.61 16 31 C 0.07 1.95 6.89 39.26 0.27 2.22 16 32 H 0.27 14.66 8.31 -92.71 -0.77 13.89 16 33 H 0.01 0.50 8.13 -2.39 -0.02 0.48 16 34 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.02 0.76 5.73 -2.39 -0.01 0.74 16 36 H 0.09 2.82 8.14 -2.39 -0.02 2.80 16 37 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.09 2.01 7.88 -2.39 -0.02 1.99 16 39 H 0.09 2.13 7.84 -2.39 -0.02 2.11 16 40 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 41 H 0.00 0.19 6.86 -2.39 -0.02 0.17 16 42 H 0.07 2.85 8.14 -2.39 -0.02 2.83 16 43 H 0.14 3.53 5.22 -2.91 -0.02 3.52 16 44 H 0.17 2.21 8.06 -2.91 -0.02 2.18 16 45 H 0.16 2.46 8.06 -2.91 -0.02 2.44 16 46 H 0.27 1.32 8.06 -2.91 -0.02 1.30 16 Total: -1.00 -74.07 363.23 0.26 -73.81 By element: Atomic # 1 Polarization: 17.52 SS G_CDS: 0.23 Total: 17.75 kcal Atomic # 6 Polarization: 4.92 SS G_CDS: 6.68 Total: 11.60 kcal Atomic # 7 Polarization: -117.74 SS G_CDS: -8.61 Total: -126.35 kcal Atomic # 8 Polarization: -23.25 SS G_CDS: -0.07 Total: -23.32 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.50 kcal Total: -74.07 0.26 -73.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277936728.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.566 kcal (2) G-P(sol) polarization free energy of solvation -74.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.812 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.58 seconds