Wall clock time and date at job start Sat Apr 11 2020 06:03:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86800 * 119.99576 * 2 1 4 4 H 1.48502 * 109.47496 * 269.99875 * 3 2 1 5 5 H 1.48503 * 109.47098 * 30.00010 * 3 2 1 6 6 H 1.48508 * 109.47255 * 149.99898 * 3 2 1 7 7 C 1.38812 * 120.00694 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00616 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99540 * 0.02562 * 7 2 1 10 10 C 1.46500 * 119.99917 * 179.97438 * 9 7 2 11 11 H 1.09002 * 109.47092 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47007 * 299.99756 * 10 9 7 13 13 C 1.52994 * 109.47404 * 294.99774 * 12 10 9 14 14 N 1.46507 * 109.47394 * 179.97438 * 13 12 10 15 15 C 1.34773 * 119.99864 * 179.97438 * 14 13 12 16 16 O 1.21469 * 120.00425 * 0.02562 * 15 14 13 17 17 C 1.48538 * 119.99752 * 179.97438 * 15 14 13 18 18 N 1.32456 * 119.18626 * 359.73824 * 17 15 14 19 19 C 1.32114 * 120.76834 * 179.71302 * 18 17 15 20 20 C 1.38801 * 119.16177 * 0.54416 * 19 18 17 21 21 C 1.38797 * 118.50598 * 359.72709 * 20 19 18 22 22 N 1.32103 * 119.16755 * 0.02562 * 21 20 19 23 23 C 1.53000 * 109.47023 * 59.99548 * 10 9 7 24 24 C 1.50703 * 109.46801 * 65.00116 * 23 10 9 25 25 C 1.38232 * 120.00020 * 269.72567 * 24 23 10 26 26 C 1.38243 * 119.99552 * 179.76936 * 25 24 23 27 27 C 1.38227 * 120.00161 * 0.50618 * 26 25 24 28 28 C 1.38236 * 120.00347 * 359.74476 * 27 26 25 29 29 C 1.38236 * 119.99808 * 89.99886 * 24 23 10 30 30 H 0.96997 * 120.00620 * 359.97438 * 1 2 3 31 31 H 0.96996 * 120.00098 * 359.97438 * 9 7 2 32 32 H 1.09000 * 109.47325 * 54.99943 * 12 10 9 33 33 H 1.09008 * 109.47017 * 174.99852 * 12 10 9 34 34 H 1.09000 * 109.47476 * 300.00087 * 13 12 10 35 35 H 1.09008 * 109.46970 * 60.00049 * 13 12 10 36 36 H 0.96996 * 119.99924 * 0.02562 * 14 13 12 37 37 H 1.08004 * 120.41603 * 180.27286 * 19 18 17 38 38 H 1.07999 * 120.74230 * 179.75559 * 20 19 18 39 39 H 1.08008 * 120.41717 * 180.02562 * 21 20 19 40 40 H 1.09002 * 109.47069 * 184.99840 * 23 10 9 41 41 H 1.08991 * 109.47625 * 305.00159 * 23 10 9 42 42 H 1.07997 * 120.00080 * 359.97438 * 25 24 23 43 43 H 1.07997 * 119.99635 * 180.22748 * 26 25 24 44 44 H 1.08002 * 120.00278 * 179.72704 * 27 26 25 45 45 H 1.07998 * 120.00418 * 179.97438 * 28 27 26 46 46 H 1.08010 * 120.00298 * 0.02562 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 2.4976 2.0466 -1.4001 5 1 1.4474 2.6527 0.7001 6 1 3.5477 1.4404 0.7001 7 6 2.0104 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0001 9 7 1.3257 -2.3880 0.0005 10 6 2.0583 -3.6567 0.0005 11 1 1.3500 -4.4852 0.0010 12 6 2.9378 -3.7377 -1.2487 13 6 2.0512 -3.7824 -2.4947 14 7 2.8934 -3.8593 -3.6910 15 6 2.3261 -3.9097 -4.9125 16 8 1.1164 -3.8909 -5.0216 17 6 3.1800 -3.9871 -6.1254 18 7 4.4974 -4.0004 -5.9880 19 6 5.2864 -4.0743 -7.0451 20 6 4.7186 -4.1268 -8.3106 21 6 3.3349 -4.1054 -8.4171 22 7 2.6055 -4.0355 -7.3179 23 6 2.9380 -3.7376 1.2497 24 6 2.0646 -3.7815 2.4771 25 6 1.6932 -2.6066 3.1035 26 6 0.8881 -2.6467 4.2266 27 6 0.4632 -3.8622 4.7293 28 6 0.8388 -5.0375 4.1059 29 6 1.6396 -4.9971 2.9798 30 1 -0.4851 0.8400 0.0004 31 1 0.3558 -2.3881 0.0005 32 1 3.5852 -2.8620 -1.2947 33 1 3.5489 -4.6394 -1.2051 34 1 1.4038 -4.6581 -2.4489 35 1 1.4402 -2.8807 -2.5384 36 1 3.8594 -3.8747 -3.6039 37 1 6.3598 -4.0892 -6.9263 38 1 5.3395 -4.1836 -9.1924 39 1 2.8604 -4.1453 -9.3866 40 1 3.5489 -4.6393 1.2061 41 1 3.5854 -2.8620 1.2957 42 1 2.0293 -1.6572 2.7136 43 1 0.5950 -1.7286 4.7139 44 1 -0.1622 -3.8938 5.6093 45 1 0.5071 -5.9871 4.4989 46 1 1.9337 -5.9154 2.4932 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278537918.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:44 Heat of formation + Delta-G solvation = 51.313612 kcal Electronic energy + Delta-G solvation = -28261.072461 eV Core-core repulsion = 24344.103904 eV Total energy + Delta-G solvation = -3916.968557 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 2.15 seconds Orbital eigenvalues (eV) -41.39959 -39.11611 -38.75221 -36.54721 -34.65327 -33.87911 -32.58888 -32.40726 -30.96521 -30.27806 -29.16031 -27.18753 -25.52141 -24.81282 -24.09784 -22.88932 -21.94697 -20.95016 -20.68991 -19.53548 -18.36068 -17.81236 -17.08318 -16.28359 -16.12926 -15.76595 -15.52126 -15.24332 -15.15452 -14.56139 -14.50036 -14.29609 -13.90845 -13.78566 -13.69541 -13.21251 -12.94125 -12.84286 -12.76167 -12.35484 -11.64953 -11.51754 -11.43650 -11.31636 -11.22995 -10.97081 -10.86693 -10.73375 -10.48243 -10.33757 -10.32324 -10.04252 -9.93823 -9.76669 -9.60570 -9.54287 -8.92479 -8.73278 -8.31984 -8.04650 -6.93513 -5.74176 -3.02819 0.21403 0.74887 1.94243 2.02544 2.67165 2.86657 3.42453 3.47498 3.50418 3.70084 3.71133 4.18426 4.21957 4.39690 4.58273 4.59998 4.68397 4.98586 5.34188 5.34726 5.36414 5.45168 5.49001 5.55280 5.62250 5.71355 5.85651 5.90495 6.01318 6.05899 6.14566 6.17848 6.26617 6.40392 6.45859 6.52804 6.58272 6.69646 6.70483 6.75492 6.83674 6.96252 7.00759 7.16020 7.39694 7.46972 7.65167 7.70764 7.81600 8.32092 8.42641 9.54840 10.12264 10.47144 11.47594 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011601 B = 0.002736 C = 0.002387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2413.004750 B =10232.576168 C =11725.619512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.007 4.007 3 Si 0.894 3.106 4 H -0.292 1.292 5 H -0.293 1.293 6 H -0.283 1.283 7 C -0.234 4.234 8 H 0.069 0.931 9 N -0.715 5.715 10 C 0.187 3.813 11 H 0.056 0.944 12 C -0.139 4.139 13 C 0.126 3.874 14 N -0.700 5.700 15 C 0.575 3.425 16 O -0.504 6.504 17 C 0.291 3.709 18 N -0.495 5.495 19 C 0.145 3.855 20 C -0.215 4.215 21 C 0.145 3.855 22 N -0.469 5.469 23 C -0.094 4.094 24 C -0.057 4.057 25 C -0.079 4.079 26 C -0.124 4.124 27 C -0.137 4.137 28 C -0.133 4.133 29 C -0.130 4.130 30 H 0.254 0.746 31 H 0.386 0.614 32 H 0.074 0.926 33 H 0.052 0.948 34 H 0.060 0.940 35 H 0.091 0.909 36 H 0.407 0.593 37 H 0.176 0.824 38 H 0.153 0.847 39 H 0.176 0.824 40 H 0.054 0.946 41 H 0.075 0.925 42 H 0.133 0.867 43 H 0.113 0.887 44 H 0.109 0.891 45 H 0.110 0.890 46 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.491 -11.715 -7.959 18.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.203 4.203 3 Si 0.726 3.274 4 H -0.220 1.220 5 H -0.219 1.219 6 H -0.208 1.208 7 C -0.365 4.365 8 H 0.087 0.913 9 N -0.355 5.355 10 C 0.075 3.925 11 H 0.074 0.926 12 C -0.179 4.179 13 C 0.004 3.996 14 N -0.352 5.352 15 C 0.355 3.645 16 O -0.376 6.376 17 C 0.021 3.979 18 N -0.212 5.212 19 C -0.021 4.021 20 C -0.237 4.237 21 C -0.022 4.022 22 N -0.184 5.184 23 C -0.133 4.133 24 C -0.057 4.057 25 C -0.097 4.097 26 C -0.142 4.142 27 C -0.155 4.155 28 C -0.151 4.151 29 C -0.148 4.148 30 H 0.064 0.936 31 H 0.220 0.780 32 H 0.093 0.907 33 H 0.071 0.929 34 H 0.078 0.922 35 H 0.109 0.891 36 H 0.242 0.758 37 H 0.193 0.807 38 H 0.171 0.829 39 H 0.193 0.807 40 H 0.073 0.927 41 H 0.093 0.907 42 H 0.151 0.849 43 H 0.131 0.869 44 H 0.127 0.873 45 H 0.128 0.872 46 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 10.066 -11.478 -7.164 16.864 hybrid contribution 1.235 1.043 -0.942 1.871 sum 11.301 -10.435 -8.106 17.387 Atomic orbital electron populations 1.69647 1.04964 1.25480 1.57121 1.24664 0.95283 0.97289 1.03091 0.86395 0.78757 0.84767 0.77479 1.21951 1.21932 1.20839 1.19020 0.90790 0.83922 1.42765 0.91269 1.42376 1.05679 0.99561 1.87873 1.20059 0.92440 0.90066 0.89971 0.92603 1.22274 0.99041 1.01303 0.95297 1.21501 0.93283 1.03154 0.81686 1.45911 1.11429 1.72664 1.05224 1.17246 0.86557 0.78827 0.81852 1.90832 1.13028 1.48024 1.85669 1.23146 0.87745 0.93905 0.93118 1.68345 1.05345 1.12209 1.35257 1.23321 1.00834 0.90314 0.87667 1.23174 0.97727 1.02231 1.00563 1.23418 0.90856 0.90299 0.97599 1.68293 1.41247 1.10432 0.98416 1.21150 0.97313 1.01294 0.93565 1.19798 0.97650 0.92571 0.95651 1.21285 0.95984 0.99025 0.93420 1.21142 0.98555 0.97264 0.97244 1.20972 1.01227 0.92957 1.00320 1.20925 0.99702 0.97550 0.96931 1.20966 0.99594 0.97283 0.96944 0.93582 0.78043 0.90731 0.92921 0.92174 0.89101 0.75774 0.80742 0.82916 0.80746 0.92695 0.90665 0.84864 0.86921 0.87269 0.87219 0.87039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.84 13.06 55.49 0.72 -26.11 16 2 C -0.01 -0.18 5.50 -17.43 -0.10 -0.27 16 3 Si 0.89 21.68 29.55 -169.99 -5.02 16.65 16 4 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 5 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.23 -5.77 7.90 -15.06 -0.12 -5.89 16 8 H 0.07 1.67 6.64 -52.49 -0.35 1.32 16 9 N -0.72 -16.00 4.14 -53.43 -0.22 -16.22 16 10 C 0.19 3.30 2.67 -67.93 -0.18 3.12 16 11 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 12 C -0.14 -2.19 4.73 -26.74 -0.13 -2.32 16 13 C 0.13 2.17 5.56 -4.04 -0.02 2.15 16 14 N -0.70 -10.96 5.54 -61.02 -0.34 -11.30 16 15 C 0.58 10.11 7.85 -12.01 -0.09 10.01 16 16 O -0.50 -10.78 16.86 5.39 0.09 -10.69 16 17 C 0.29 4.32 7.60 -157.07 -1.19 3.13 16 18 N -0.49 -5.90 9.58 -11.12 -0.11 -6.01 16 19 C 0.15 1.14 11.30 -17.22 -0.19 0.95 16 20 C -0.21 -1.38 10.18 -39.17 -0.40 -1.78 16 21 C 0.14 1.30 11.30 -17.23 -0.19 1.10 16 22 N -0.47 -6.65 10.13 -11.12 -0.11 -6.76 16 23 C -0.09 -1.54 4.75 -27.88 -0.13 -1.68 16 24 C -0.06 -0.99 4.95 -104.62 -0.52 -1.50 16 25 C -0.08 -1.50 9.32 -39.58 -0.37 -1.87 16 26 C -0.12 -2.15 10.05 -39.58 -0.40 -2.54 16 27 C -0.14 -2.11 10.05 -39.59 -0.40 -2.51 16 28 C -0.13 -1.98 10.05 -39.58 -0.40 -2.38 16 29 C -0.13 -2.02 9.70 -39.58 -0.38 -2.41 16 30 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 31 H 0.39 9.76 8.03 -40.82 -0.33 9.43 16 32 H 0.07 1.28 7.11 -51.93 -0.37 0.91 16 33 H 0.05 0.69 8.14 -51.92 -0.42 0.27 16 34 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.09 1.94 7.75 -51.92 -0.40 1.54 16 36 H 0.41 5.44 7.78 -40.82 -0.32 5.12 16 37 H 0.18 0.70 8.06 -52.48 -0.42 0.28 16 38 H 0.15 0.38 8.06 -52.49 -0.42 -0.04 16 39 H 0.18 0.92 8.06 -52.48 -0.42 0.50 16 40 H 0.05 0.77 8.09 -51.93 -0.42 0.35 16 41 H 0.07 1.34 7.05 -51.93 -0.37 0.98 16 42 H 0.13 2.82 7.39 -52.49 -0.39 2.44 16 43 H 0.11 1.81 8.06 -52.49 -0.42 1.38 16 44 H 0.11 1.42 8.06 -52.49 -0.42 0.99 16 45 H 0.11 1.34 8.06 -52.49 -0.42 0.92 16 46 H 0.11 1.49 8.06 -52.48 -0.42 1.07 16 LS Contribution 392.64 15.07 5.92 5.92 Total: -1.00 -32.97 392.64 -10.59 -43.56 By element: Atomic # 1 Polarization: 21.95 SS G_CDS: -6.30 Total: 15.65 kcal Atomic # 6 Polarization: 0.53 SS G_CDS: -5.22 Total: -4.69 kcal Atomic # 7 Polarization: -66.35 SS G_CDS: -0.05 Total: -66.40 kcal Atomic # 8 Polarization: -10.78 SS G_CDS: 0.09 Total: -10.69 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -32.97 -10.59 -43.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278537918.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.877 kcal (2) G-P(sol) polarization free energy of solvation -32.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.563 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.16 seconds