Wall clock time and date at job start Sat Apr 11 2020 06:03:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86800 * 119.99576 * 2 1 4 4 H 1.48502 * 109.47496 * 269.99875 * 3 2 1 5 5 H 1.48503 * 109.47098 * 30.00010 * 3 2 1 6 6 H 1.48508 * 109.47255 * 149.99898 * 3 2 1 7 7 C 1.38812 * 120.00694 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00616 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99540 * 0.02562 * 7 2 1 10 10 C 1.46500 * 119.99917 * 179.97438 * 9 7 2 11 11 H 1.09002 * 109.47092 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47007 * 299.99756 * 10 9 7 13 13 C 1.52994 * 109.47404 * 294.99774 * 12 10 9 14 14 N 1.46507 * 109.47394 * 179.97438 * 13 12 10 15 15 C 1.34773 * 119.99864 * 179.97438 * 14 13 12 16 16 O 1.21469 * 120.00425 * 0.02562 * 15 14 13 17 17 C 1.48538 * 119.99752 * 179.97438 * 15 14 13 18 18 N 1.32456 * 119.18626 * 359.73824 * 17 15 14 19 19 C 1.32114 * 120.76834 * 179.71302 * 18 17 15 20 20 C 1.38801 * 119.16177 * 0.54416 * 19 18 17 21 21 C 1.38797 * 118.50598 * 359.72709 * 20 19 18 22 22 N 1.32103 * 119.16755 * 0.02562 * 21 20 19 23 23 C 1.53000 * 109.47023 * 59.99548 * 10 9 7 24 24 C 1.50703 * 109.46801 * 65.00116 * 23 10 9 25 25 C 1.38232 * 120.00020 * 269.72567 * 24 23 10 26 26 C 1.38243 * 119.99552 * 179.76936 * 25 24 23 27 27 C 1.38227 * 120.00161 * 0.50618 * 26 25 24 28 28 C 1.38236 * 120.00347 * 359.74476 * 27 26 25 29 29 C 1.38236 * 119.99808 * 89.99886 * 24 23 10 30 30 H 0.96997 * 120.00620 * 359.97438 * 1 2 3 31 31 H 0.96996 * 120.00098 * 359.97438 * 9 7 2 32 32 H 1.09000 * 109.47325 * 54.99943 * 12 10 9 33 33 H 1.09008 * 109.47017 * 174.99852 * 12 10 9 34 34 H 1.09000 * 109.47476 * 300.00087 * 13 12 10 35 35 H 1.09008 * 109.46970 * 60.00049 * 13 12 10 36 36 H 0.96996 * 119.99924 * 0.02562 * 14 13 12 37 37 H 1.08004 * 120.41603 * 180.27286 * 19 18 17 38 38 H 1.07999 * 120.74230 * 179.75559 * 20 19 18 39 39 H 1.08008 * 120.41717 * 180.02562 * 21 20 19 40 40 H 1.09002 * 109.47069 * 184.99840 * 23 10 9 41 41 H 1.08991 * 109.47625 * 305.00159 * 23 10 9 42 42 H 1.07997 * 120.00080 * 359.97438 * 25 24 23 43 43 H 1.07997 * 119.99635 * 180.22748 * 26 25 24 44 44 H 1.08002 * 120.00278 * 179.72704 * 27 26 25 45 45 H 1.07998 * 120.00418 * 179.97438 * 28 27 26 46 46 H 1.08010 * 120.00298 * 0.02562 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 2.4976 2.0466 -1.4001 5 1 1.4474 2.6527 0.7001 6 1 3.5477 1.4404 0.7001 7 6 2.0104 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0001 9 7 1.3257 -2.3880 0.0005 10 6 2.0583 -3.6567 0.0005 11 1 1.3500 -4.4852 0.0010 12 6 2.9378 -3.7377 -1.2487 13 6 2.0512 -3.7824 -2.4947 14 7 2.8934 -3.8593 -3.6910 15 6 2.3261 -3.9097 -4.9125 16 8 1.1164 -3.8909 -5.0216 17 6 3.1800 -3.9871 -6.1254 18 7 4.4974 -4.0004 -5.9880 19 6 5.2864 -4.0743 -7.0451 20 6 4.7186 -4.1268 -8.3106 21 6 3.3349 -4.1054 -8.4171 22 7 2.6055 -4.0355 -7.3179 23 6 2.9380 -3.7376 1.2497 24 6 2.0646 -3.7815 2.4771 25 6 1.6932 -2.6066 3.1035 26 6 0.8881 -2.6467 4.2266 27 6 0.4632 -3.8622 4.7293 28 6 0.8388 -5.0375 4.1059 29 6 1.6396 -4.9971 2.9798 30 1 -0.4851 0.8400 0.0004 31 1 0.3558 -2.3881 0.0005 32 1 3.5852 -2.8620 -1.2947 33 1 3.5489 -4.6394 -1.2051 34 1 1.4038 -4.6581 -2.4489 35 1 1.4402 -2.8807 -2.5384 36 1 3.8594 -3.8747 -3.6039 37 1 6.3598 -4.0892 -6.9263 38 1 5.3395 -4.1836 -9.1924 39 1 2.8604 -4.1453 -9.3866 40 1 3.5489 -4.6393 1.2061 41 1 3.5854 -2.8620 1.2957 42 1 2.0293 -1.6572 2.7136 43 1 0.5950 -1.7286 4.7139 44 1 -0.1622 -3.8938 5.6093 45 1 0.5071 -5.9871 4.4989 46 1 1.9337 -5.9154 2.4932 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278537918.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:43 Heat of formation + Delta-G solvation = 29.039517 kcal Electronic energy + Delta-G solvation = -28262.038338 eV Core-core repulsion = 24344.103904 eV Total energy + Delta-G solvation = -3917.934434 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.24617 -40.41810 -40.05347 -38.05115 -36.00367 -34.82530 -34.23112 -33.35220 -32.35255 -31.55842 -30.81953 -28.58363 -26.54761 -25.96671 -25.51521 -24.19068 -23.23425 -22.16257 -22.03356 -21.03704 -19.54616 -18.85508 -18.64074 -17.41888 -17.14041 -16.98825 -16.77874 -16.69090 -16.04221 -15.98321 -15.81425 -15.70599 -15.31388 -15.01331 -14.89322 -14.50253 -14.35701 -14.22804 -14.08443 -13.77608 -13.09241 -13.00764 -12.87568 -12.76421 -12.48237 -12.33523 -12.31597 -12.16518 -12.06588 -11.72286 -11.66830 -11.54843 -11.29859 -11.21457 -10.81938 -10.76091 -10.39815 -10.13388 -9.61573 -9.38203 -8.83429 -7.81973 -5.06547 -0.61419 0.08791 0.66551 0.73315 1.45334 1.46634 1.53080 1.54954 1.74280 2.61461 2.79539 2.87792 3.09243 3.30499 3.53311 3.66213 3.89265 3.94960 4.01415 4.10521 4.17826 4.23151 4.32224 4.38379 4.40018 4.45984 4.62228 4.68731 4.77148 4.79848 4.85483 4.87854 4.99631 5.12318 5.16573 5.26402 5.28982 5.38715 5.40660 5.46425 5.54390 5.66134 5.74936 5.83535 5.89817 6.06446 6.32919 6.36213 6.38691 6.87692 7.07003 7.45912 8.22677 8.44826 9.41825 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011601 B = 0.002736 C = 0.002387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2413.004750 B =10232.576168 C =11725.619512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.073 4.073 3 Si 0.945 3.055 4 H -0.300 1.300 5 H -0.305 1.305 6 H -0.267 1.267 7 C -0.196 4.196 8 H 0.078 0.922 9 N -0.722 5.722 10 C 0.182 3.818 11 H 0.065 0.935 12 C -0.124 4.124 13 C 0.136 3.864 14 N -0.688 5.688 15 C 0.569 3.431 16 O -0.559 6.559 17 C 0.259 3.741 18 N -0.504 5.504 19 C 0.135 3.865 20 C -0.178 4.178 21 C 0.127 3.873 22 N -0.512 5.512 23 C -0.084 4.084 24 C -0.072 4.072 25 C -0.108 4.108 26 C -0.143 4.143 27 C -0.137 4.137 28 C -0.130 4.130 29 C -0.129 4.129 30 H 0.242 0.758 31 H 0.368 0.632 32 H 0.062 0.938 33 H 0.096 0.904 34 H 0.061 0.939 35 H 0.041 0.959 36 H 0.420 0.580 37 H 0.219 0.781 38 H 0.205 0.795 39 H 0.207 0.793 40 H 0.093 0.907 41 H 0.056 0.944 42 H 0.097 0.903 43 H 0.113 0.887 44 H 0.136 0.864 45 H 0.145 0.855 46 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.912 -14.679 -8.961 22.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.265 4.265 3 Si 0.777 3.223 4 H -0.228 1.228 5 H -0.233 1.233 6 H -0.191 1.191 7 C -0.329 4.329 8 H 0.096 0.904 9 N -0.360 5.360 10 C 0.072 3.928 11 H 0.084 0.916 12 C -0.164 4.164 13 C 0.013 3.987 14 N -0.340 5.340 15 C 0.351 3.649 16 O -0.435 6.435 17 C -0.011 4.011 18 N -0.221 5.221 19 C -0.030 4.030 20 C -0.199 4.199 21 C -0.038 4.038 22 N -0.228 5.228 23 C -0.124 4.124 24 C -0.072 4.072 25 C -0.126 4.126 26 C -0.161 4.161 27 C -0.155 4.155 28 C -0.147 4.147 29 C -0.147 4.147 30 H 0.051 0.949 31 H 0.199 0.801 32 H 0.081 0.919 33 H 0.114 0.886 34 H 0.079 0.921 35 H 0.060 0.940 36 H 0.258 0.742 37 H 0.236 0.764 38 H 0.222 0.778 39 H 0.224 0.776 40 H 0.111 0.889 41 H 0.075 0.925 42 H 0.115 0.885 43 H 0.131 0.869 44 H 0.154 0.846 45 H 0.163 0.837 46 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 13.602 -14.484 -8.164 21.481 hybrid contribution 0.301 1.798 -0.728 1.963 sum 13.903 -12.685 -8.893 20.816 Atomic orbital electron populations 1.69799 1.06347 1.24952 1.60859 1.25242 0.95823 0.99993 1.05470 0.85544 0.78222 0.81805 0.76737 1.22849 1.23291 1.19136 1.19291 0.91072 0.84531 1.37981 0.90402 1.42511 1.05009 1.00814 1.87659 1.20348 0.92950 0.88026 0.91481 0.91647 1.22132 0.98301 1.02831 0.93131 1.21231 0.93510 1.00796 0.83192 1.45750 1.11830 1.71931 1.04484 1.17830 0.86439 0.77444 0.83175 1.90778 1.15433 1.50600 1.86679 1.22363 0.88577 0.97993 0.92175 1.68278 1.04124 1.12449 1.37291 1.24188 1.02351 0.89135 0.87341 1.23729 0.96883 0.97454 1.01810 1.24117 0.92379 0.89978 0.97281 1.68166 1.43418 1.11761 0.99472 1.21047 0.96827 1.02288 0.92193 1.19939 0.98310 0.92854 0.96078 1.21134 0.98039 0.98367 0.95051 1.21289 0.98951 0.98583 0.97262 1.21304 1.00894 0.92331 1.01005 1.21379 0.98434 0.98710 0.96221 1.21305 0.98937 0.97409 0.97029 0.94891 0.80092 0.91894 0.88606 0.92078 0.94034 0.74244 0.76445 0.77767 0.77590 0.88896 0.92485 0.88464 0.86929 0.84613 0.83738 0.84061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.57 13.06 21.65 0.28 -59.29 16 2 C -0.07 -4.14 5.50 84.86 0.47 -3.67 16 3 Si 0.94 46.52 29.55 68.60 2.03 48.55 16 4 H -0.30 -15.00 7.11 99.48 0.71 -14.29 16 5 H -0.31 -15.54 7.11 99.48 0.71 -14.83 16 6 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 7 C -0.20 -10.03 7.90 84.03 0.66 -9.36 16 8 H 0.08 3.80 6.64 -2.91 -0.02 3.78 16 9 N -0.72 -33.45 4.14 -322.94 -1.34 -34.79 16 10 C 0.18 6.31 2.67 44.99 0.12 6.43 16 11 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 12 C -0.12 -3.77 4.73 30.59 0.14 -3.63 16 13 C 0.14 4.81 5.56 86.38 0.48 5.29 16 14 N -0.69 -21.96 5.54 -465.29 -2.58 -24.53 16 15 C 0.57 20.97 7.85 86.99 0.68 21.65 16 16 O -0.56 -25.67 16.86 -3.62 -0.06 -25.74 16 17 C 0.26 7.75 7.60 137.68 1.05 8.80 16 18 N -0.50 -11.22 9.58 -189.09 -1.81 -13.03 16 19 C 0.14 1.61 11.30 84.79 0.96 2.57 16 20 C -0.18 -1.48 10.18 22.54 0.23 -1.25 16 21 C 0.13 1.98 11.30 84.79 0.96 2.94 16 22 N -0.51 -14.54 10.13 -189.09 -1.92 -16.45 16 23 C -0.08 -2.64 4.75 29.85 0.14 -2.50 16 24 C -0.07 -2.43 4.95 -19.87 -0.10 -2.53 16 25 C -0.11 -4.21 9.32 22.27 0.21 -4.00 16 26 C -0.14 -5.02 10.05 22.27 0.22 -4.79 16 27 C -0.14 -4.00 10.05 22.27 0.22 -3.78 16 28 C -0.13 -3.43 10.05 22.27 0.22 -3.21 16 29 C -0.13 -3.63 9.70 22.27 0.22 -3.42 16 30 H 0.24 14.87 8.31 -92.71 -0.77 14.10 16 31 H 0.37 19.62 8.03 -92.71 -0.74 18.88 16 32 H 0.06 2.09 7.11 -2.39 -0.02 2.07 16 33 H 0.10 2.15 8.14 -2.38 -0.02 2.13 16 34 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 35 H 0.04 1.89 7.75 -2.38 -0.02 1.87 16 36 H 0.42 10.96 7.78 -92.71 -0.72 10.24 16 37 H 0.22 0.57 8.06 -2.91 -0.02 0.54 16 38 H 0.21 -0.40 8.06 -2.91 -0.02 -0.42 16 39 H 0.21 1.57 8.06 -2.91 -0.02 1.55 16 40 H 0.09 2.22 8.09 -2.39 -0.02 2.20 16 41 H 0.06 1.99 7.05 -2.39 -0.02 1.98 16 42 H 0.10 4.41 7.39 -2.91 -0.02 4.39 16 43 H 0.11 3.78 8.06 -2.91 -0.02 3.76 16 44 H 0.14 3.16 8.06 -2.91 -0.02 3.14 16 45 H 0.14 2.83 8.06 -2.91 -0.02 2.81 16 46 H 0.14 3.11 8.06 -2.91 -0.02 3.09 16 Total: -1.00 -81.03 392.64 1.05 -79.98 By element: Atomic # 1 Polarization: 40.20 SS G_CDS: -0.45 Total: 39.76 kcal Atomic # 6 Polarization: -1.34 SS G_CDS: 6.89 Total: 5.55 kcal Atomic # 7 Polarization: -140.74 SS G_CDS: -7.36 Total: -148.10 kcal Atomic # 8 Polarization: -25.67 SS G_CDS: -0.06 Total: -25.74 kcal Atomic # 14 Polarization: 46.52 SS G_CDS: 2.03 Total: 48.55 kcal Total: -81.03 1.05 -79.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278537918.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.023 kcal (2) G-P(sol) polarization free energy of solvation -81.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.983 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds