Wall clock time and date at job start Sat Apr 11 2020 06:04:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86803 * 120.00109 * 2 1 4 4 H 1.48493 * 109.47063 * 90.00480 * 3 2 1 5 5 H 1.48503 * 109.46839 * 210.00131 * 3 2 1 6 6 H 1.48498 * 109.46899 * 329.99999 * 3 2 1 7 7 C 1.38814 * 119.99920 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00069 * 161.12344 * 7 2 1 9 9 N 1.36935 * 120.00236 * 341.12471 * 7 2 1 10 10 C 1.47243 * 121.33617 * 333.73699 * 9 7 2 11 11 C 1.53273 * 107.62695 * 115.71761 * 10 9 7 12 12 C 1.50604 * 110.81441 * 47.65763 * 11 10 9 13 13 C 1.38983 * 117.60444 * 160.27195 * 12 11 10 14 14 C 1.37908 * 120.58108 * 179.39244 * 13 12 11 15 15 C 1.38265 * 119.82227 * 0.02562 * 14 13 12 16 16 C 1.37953 * 119.72115 * 0.19534 * 15 14 13 17 17 C 1.37675 * 122.87067 * 340.03594 * 12 11 10 18 18 C 1.46682 * 121.34216 * 154.01734 * 9 7 2 19 19 H 1.08998 * 109.43603 * 344.30372 * 18 9 7 20 20 C 1.52998 * 109.43035 * 104.17482 * 18 9 7 21 21 N 1.46500 * 109.47614 * 304.99697 * 20 18 9 22 22 C 1.34773 * 120.00767 * 180.02562 * 21 20 18 23 23 O 1.21281 * 119.99576 * 359.97438 * 22 21 20 24 24 C 1.50698 * 120.00231 * 180.02562 * 22 21 20 25 25 N 1.46504 * 109.46845 * 179.97438 * 24 22 21 26 26 C 1.36882 * 126.39501 * 90.00590 * 25 24 22 27 27 C 1.34676 * 106.81511 * 180.02562 * 26 25 24 28 28 N 1.34127 * 108.02138 * 359.97438 * 27 26 25 29 29 C 1.30503 * 109.25672 * 359.73069 * 28 27 26 30 30 H 0.97005 * 119.99854 * 359.97438 * 1 2 3 31 31 H 1.09000 * 109.77859 * 235.30238 * 10 9 7 32 32 H 1.09005 * 109.77603 * 356.11109 * 10 9 7 33 33 H 1.08998 * 109.31646 * 287.25219 * 11 10 9 34 34 H 1.08998 * 109.08164 * 167.91247 * 11 10 9 35 35 H 1.07995 * 119.70960 * 359.41481 * 13 12 11 36 36 H 1.07994 * 120.08948 * 180.02562 * 14 13 12 37 37 H 1.08005 * 120.13771 * 180.21908 * 15 14 13 38 38 H 1.08004 * 119.74584 * 179.97438 * 16 15 14 39 39 H 1.08993 * 109.47970 * 65.00013 * 20 18 9 40 40 H 1.09005 * 109.46985 * 185.00441 * 20 18 9 41 41 H 0.97009 * 119.99397 * 0.02562 * 21 20 18 42 42 H 1.09000 * 109.47295 * 299.99761 * 24 22 21 43 43 H 1.09004 * 109.47061 * 60.00276 * 24 22 21 44 44 H 1.08000 * 126.59559 * 0.02626 * 26 25 24 45 45 H 1.07994 * 125.98850 * 180.02562 * 27 26 25 46 46 H 1.08002 * 125.65482 * 180.29441 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 1.4000 5 1 3.5478 1.4401 -0.7001 6 1 1.4477 2.6526 -0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0467 -1.2272 -0.3031 9 7 1.3808 -2.3564 0.3826 10 6 0.2343 -2.3331 1.3061 11 6 -0.9892 -2.8488 0.5403 12 6 -0.6603 -4.1174 -0.2018 13 6 -1.7194 -4.9294 -0.5899 14 6 -1.4892 -6.0989 -1.2836 15 6 -0.1943 -6.4694 -1.5964 16 6 0.8591 -5.6676 -1.2084 17 6 0.6289 -4.4914 -0.5076 18 6 1.8254 -3.6661 -0.1057 19 1 2.4779 -3.5293 -0.9681 20 6 2.5931 -4.3889 1.0029 21 7 3.6888 -3.5376 1.4732 22 6 4.5057 -3.9708 2.4537 23 8 4.3334 -5.0653 2.9471 24 6 5.6323 -3.0949 2.9378 25 7 6.3675 -3.7870 3.9993 26 6 7.4446 -4.6153 3.8342 27 6 7.8067 -5.0332 5.0622 28 7 6.9737 -4.4748 5.9529 29 6 6.1127 -3.7222 5.3240 30 1 -0.4850 0.8401 0.0004 31 1 0.4360 -2.9786 2.1610 32 1 0.0561 -1.3132 1.6471 33 1 -1.3145 -2.0907 -0.1721 34 1 -1.7951 -3.0457 1.2473 35 1 -2.7315 -4.6418 -0.3465 36 1 -2.3181 -6.7237 -1.5816 37 1 -0.0084 -7.3824 -2.1426 38 1 1.8707 -5.9568 -1.4522 39 1 1.9186 -4.6036 1.8316 40 1 2.9997 -5.3225 0.6141 41 1 3.8263 -2.6621 1.0788 42 1 6.3069 -2.8794 2.1092 43 1 5.2254 -2.1616 3.3273 44 1 7.9140 -4.8825 2.8989 45 1 8.6249 -5.7002 5.2899 46 1 5.3251 -3.1455 5.7860 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001281777169.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:04 Heat of formation + Delta-G solvation = 82.880694 kcal Electronic energy + Delta-G solvation = -29510.972759 eV Core-core repulsion = 25595.373053 eV Total energy + Delta-G solvation = -3915.599706 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.00809 -39.75655 -39.05283 -36.42153 -34.33953 -33.90277 -32.43553 -32.11207 -29.99207 -29.49998 -28.95703 -28.06151 -26.54511 -24.21773 -22.73817 -22.18392 -21.50466 -21.29495 -21.11011 -20.26233 -18.80672 -17.66409 -17.34091 -16.73374 -15.99048 -15.64788 -15.31907 -15.24333 -14.74392 -14.56932 -14.31890 -14.21352 -13.94159 -13.80917 -13.52572 -13.28863 -13.17674 -12.95406 -12.65262 -12.54506 -12.44310 -12.12292 -11.79317 -11.35820 -11.22091 -11.19017 -10.95579 -10.80980 -10.53443 -10.27903 -10.20063 -9.98198 -9.96509 -9.66469 -9.38173 -8.76430 -8.71015 -8.45208 -8.32793 -7.99564 -6.97566 -6.04974 -3.49326 1.79428 1.87042 2.03995 2.65298 2.67357 3.19711 3.24793 3.25904 3.30087 3.50359 4.21652 4.23965 4.59407 4.76103 4.77372 4.91139 4.93209 5.11230 5.13019 5.28509 5.34136 5.37259 5.45190 5.49488 5.69977 5.70819 5.77322 5.88283 5.97883 6.11539 6.25941 6.28564 6.35415 6.45889 6.49384 6.60382 6.66186 6.72300 6.76350 6.89412 6.93783 7.15145 7.24573 7.27299 7.42173 7.51799 7.56960 7.75881 8.11607 8.14468 8.35915 8.91266 9.53770 10.12779 11.02126 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.008992 B = 0.003875 C = 0.002913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3113.262506 B = 7224.739715 C = 9610.092125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.013 3.987 3 Si 0.902 3.098 4 H -0.286 1.286 5 H -0.279 1.279 6 H -0.291 1.291 7 C -0.265 4.265 8 H 0.069 0.931 9 N -0.580 5.580 10 C 0.165 3.835 11 C -0.096 4.096 12 C -0.039 4.039 13 C -0.134 4.134 14 C -0.127 4.127 15 C -0.139 4.139 16 C -0.119 4.119 17 C -0.081 4.081 18 C 0.194 3.806 19 H 0.077 0.923 20 C 0.115 3.885 21 N -0.699 5.699 22 C 0.490 3.510 23 O -0.538 6.538 24 C 0.084 3.916 25 N -0.441 5.441 26 C -0.047 4.047 27 C -0.034 4.034 28 N -0.498 5.498 29 C 0.194 3.806 30 H 0.257 0.743 31 H 0.007 0.993 32 H 0.096 0.904 33 H 0.101 0.899 34 H 0.048 0.952 35 H 0.113 0.887 36 H 0.112 0.888 37 H 0.113 0.887 38 H 0.114 0.886 39 H 0.062 0.938 40 H 0.058 0.942 41 H 0.412 0.588 42 H 0.120 0.880 43 H 0.126 0.874 44 H 0.170 0.830 45 H 0.167 0.833 46 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.630 -5.958 0.332 8.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.187 4.187 3 Si 0.732 3.268 4 H -0.213 1.213 5 H -0.204 1.204 6 H -0.217 1.217 7 C -0.394 4.394 8 H 0.086 0.914 9 N -0.301 5.301 10 C 0.039 3.961 11 C -0.135 4.135 12 C -0.040 4.040 13 C -0.152 4.152 14 C -0.145 4.145 15 C -0.157 4.157 16 C -0.137 4.137 17 C -0.083 4.083 18 C 0.085 3.915 19 H 0.095 0.905 20 C -0.011 4.011 21 N -0.351 5.351 22 C 0.273 3.727 23 O -0.415 6.415 24 C -0.043 4.043 25 N -0.124 5.124 26 C -0.180 4.180 27 C -0.181 4.181 28 N -0.217 5.217 29 C -0.089 4.089 30 H 0.067 0.933 31 H 0.025 0.975 32 H 0.114 0.886 33 H 0.119 0.881 34 H 0.067 0.933 35 H 0.131 0.869 36 H 0.130 0.870 37 H 0.131 0.869 38 H 0.132 0.868 39 H 0.080 0.920 40 H 0.077 0.923 41 H 0.250 0.750 42 H 0.138 0.862 43 H 0.144 0.856 44 H 0.188 0.812 45 H 0.184 0.816 46 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 5.343 -6.589 1.397 8.598 hybrid contribution 0.091 1.299 -1.422 1.928 sum 5.434 -5.291 -0.026 7.584 Atomic orbital electron populations 1.69972 1.05309 1.25820 1.51935 1.25001 0.95233 0.98416 1.00092 0.86315 0.79167 0.83609 0.77742 1.21305 1.20397 1.21692 1.19017 0.93093 0.84552 1.42710 0.91366 1.44152 1.35938 0.99845 1.50134 1.20912 0.85107 1.00793 0.89246 1.21070 0.99398 0.93632 0.99366 1.19871 0.91918 0.95905 0.96268 1.21206 0.98628 0.95272 1.00105 1.20928 0.96584 0.97174 0.99828 1.20887 0.93018 0.99856 1.01948 1.21090 0.98657 0.94747 0.99246 1.20050 0.95216 0.94882 0.98149 1.19589 0.91614 0.86444 0.93845 0.90496 1.21945 0.87919 0.92656 0.98594 1.45872 1.30182 1.21776 1.37287 1.20591 0.83719 0.87665 0.80725 1.90759 1.72384 1.21431 1.56920 1.21736 0.94584 0.96062 0.91906 1.45012 1.23921 1.35998 1.07432 1.22649 0.93705 1.00461 1.01155 1.22206 1.02330 1.04748 0.88834 1.70270 1.06457 1.11479 1.33445 1.24950 1.01722 1.02597 0.79589 0.93330 0.97507 0.88617 0.88103 0.93336 0.86851 0.87000 0.86920 0.86808 0.91992 0.92338 0.75029 0.86180 0.85610 0.81229 0.81580 0.78138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.16 10.15 55.49 0.56 -21.59 16 2 C 0.01 0.31 4.93 -17.43 -0.09 0.23 16 3 Si 0.90 18.79 29.59 -169.99 -5.03 13.76 16 4 H -0.29 -6.00 7.11 56.52 0.40 -5.60 16 5 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 6 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 7 C -0.26 -5.91 8.71 -15.06 -0.13 -6.04 16 8 H 0.07 1.43 7.31 -52.49 -0.38 1.05 16 9 N -0.58 -11.99 2.30 -166.02 -0.38 -12.37 16 10 C 0.16 3.45 5.49 -3.50 -0.02 3.44 16 11 C -0.10 -1.91 5.78 -27.79 -0.16 -2.07 16 12 C -0.04 -0.73 5.76 -104.60 -0.60 -1.34 16 13 C -0.13 -2.20 9.59 -39.43 -0.38 -2.58 16 14 C -0.13 -1.87 10.04 -39.69 -0.40 -2.27 16 15 C -0.14 -2.02 10.05 -39.68 -0.40 -2.42 16 16 C -0.12 -1.87 9.34 -39.46 -0.37 -2.24 16 17 C -0.08 -1.46 5.17 -104.55 -0.54 -2.00 16 18 C 0.19 3.49 2.50 -68.93 -0.17 3.32 16 19 H 0.08 1.39 7.98 -51.93 -0.41 0.98 16 20 C 0.12 1.91 5.00 -4.04 -0.02 1.89 16 21 N -0.70 -10.38 5.39 -60.30 -0.32 -10.70 16 22 C 0.49 7.16 7.90 -10.99 -0.09 7.07 16 23 O -0.54 -10.14 16.43 5.56 0.09 -10.05 16 24 C 0.08 0.88 6.63 -5.19 -0.03 0.85 16 25 N -0.44 -5.55 2.24 -119.86 -0.27 -5.82 16 26 C -0.05 -0.57 11.58 -16.56 -0.19 -0.76 16 27 C -0.03 -0.45 11.87 -17.81 -0.21 -0.66 16 28 N -0.50 -7.64 11.25 -14.66 -0.16 -7.80 16 29 C 0.19 2.63 12.56 -90.37 -1.14 1.50 16 30 H 0.26 6.32 8.31 -40.82 -0.34 5.99 16 31 H 0.01 0.14 7.46 -51.93 -0.39 -0.25 16 32 H 0.10 2.24 5.91 -51.93 -0.31 1.93 16 33 H 0.10 2.29 7.16 -51.93 -0.37 1.91 16 34 H 0.05 0.87 8.11 -51.93 -0.42 0.45 16 35 H 0.11 1.67 8.05 -52.49 -0.42 1.24 16 36 H 0.11 1.34 8.06 -52.49 -0.42 0.92 16 37 H 0.11 1.33 8.06 -52.48 -0.42 0.91 16 38 H 0.11 1.56 8.05 -52.48 -0.42 1.13 16 39 H 0.06 1.16 7.53 -51.93 -0.39 0.77 16 40 H 0.06 0.94 8.03 -51.93 -0.42 0.52 16 41 H 0.41 5.92 6.69 -40.82 -0.27 5.65 16 42 H 0.12 0.93 8.14 -51.93 -0.42 0.50 16 43 H 0.13 1.07 8.14 -51.93 -0.42 0.65 16 44 H 0.17 1.57 8.06 -52.49 -0.42 1.15 16 45 H 0.17 1.75 8.06 -52.49 -0.42 1.32 16 46 H 0.20 2.16 8.06 -52.49 -0.42 1.73 16 LS Contribution 378.76 15.07 5.71 5.71 Total: -1.00 -30.14 378.76 -11.05 -41.19 By element: Atomic # 1 Polarization: 18.07 SS G_CDS: -6.31 Total: 11.76 kcal Atomic # 6 Polarization: 0.86 SS G_CDS: -4.94 Total: -4.07 kcal Atomic # 7 Polarization: -57.72 SS G_CDS: -0.58 Total: -58.29 kcal Atomic # 8 Polarization: -10.14 SS G_CDS: 0.09 Total: -10.05 kcal Atomic # 14 Polarization: 18.79 SS G_CDS: -5.03 Total: 13.76 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -30.14 -11.05 -41.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281777169.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.067 kcal (2) G-P(sol) polarization free energy of solvation -30.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.187 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds