Wall clock time and date at job start Sat Apr 11 2020 06:04:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 119.99685 * 2 1 4 4 H 1.48497 * 109.47342 * 240.00556 * 3 2 1 5 5 H 1.48506 * 109.47191 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47402 * 119.99892 * 3 2 1 7 7 C 1.38813 * 120.00558 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00048 * 195.23750 * 7 2 1 9 9 N 1.36933 * 119.99599 * 15.23862 * 7 2 1 10 10 C 1.47211 * 121.31623 * 36.61308 * 9 7 2 11 11 C 1.52780 * 107.86550 * 115.75456 * 10 9 7 12 12 C 1.50602 * 110.84526 * 47.54240 * 11 10 9 13 13 C 1.38974 * 117.61787 * 160.45392 * 12 11 10 14 14 C 1.37910 * 120.58383 * 178.89866 * 13 12 11 15 15 C 1.38259 * 119.82388 * 359.97438 * 14 13 12 16 16 C 1.37962 * 119.72006 * 0.24701 * 15 14 13 17 17 C 1.37673 * 122.86018 * 339.78505 * 12 11 10 18 18 C 1.46687 * 121.32786 * 216.65580 * 9 7 2 19 19 H 1.08998 * 109.43274 * 104.32065 * 18 9 7 20 20 C 1.52995 * 109.43186 * 344.40892 * 18 9 7 21 21 N 1.46494 * 109.47577 * 59.59841 * 20 18 9 22 22 C 1.34772 * 120.00332 * 185.61738 * 21 20 18 23 23 O 1.21276 * 120.00093 * 359.97438 * 22 21 20 24 24 C 1.50706 * 119.99838 * 179.97438 * 22 21 20 25 25 N 1.46504 * 109.46656 * 179.97438 * 24 22 21 26 26 C 1.36886 * 126.39401 * 269.99825 * 25 24 22 27 27 C 1.34677 * 106.81583 * 179.97438 * 26 25 24 28 28 N 1.34134 * 108.01711 * 359.78344 * 27 26 25 29 29 C 1.30494 * 109.25657 * 0.36562 * 28 27 26 30 30 H 0.96994 * 120.00518 * 359.97438 * 1 2 3 31 31 H 1.08994 * 109.78206 * 356.16474 * 10 9 7 32 32 H 1.09006 * 109.84781 * 235.37732 * 10 9 7 33 33 H 1.08999 * 109.20335 * 287.19513 * 11 10 9 34 34 H 1.08995 * 109.20802 * 167.89420 * 11 10 9 35 35 H 1.08003 * 119.70599 * 358.87081 * 13 12 11 36 36 H 1.08003 * 120.08540 * 179.97438 * 14 13 12 37 37 H 1.07995 * 120.14149 * 180.26596 * 15 14 13 38 38 H 1.07997 * 119.74743 * 179.97438 * 16 15 14 39 39 H 1.08991 * 109.47401 * 299.58911 * 20 18 9 40 40 H 1.09007 * 109.46889 * 179.59395 * 20 18 9 41 41 H 0.97003 * 119.99704 * 5.60956 * 21 20 18 42 42 H 1.08994 * 109.46973 * 59.99785 * 24 22 21 43 43 H 1.08997 * 109.47213 * 299.99443 * 24 22 21 44 44 H 1.07997 * 126.59535 * 359.94583 * 26 25 24 45 45 H 1.07989 * 125.98908 * 179.97438 * 27 26 25 46 46 H 1.08002 * 125.64698 * 179.89743 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6966 -1.2125 5 1 1.2850 2.7465 0.0006 6 1 3.1039 1.6966 1.2125 7 6 2.0104 -1.2021 -0.0005 8 1 3.0619 -1.2185 0.2453 9 7 1.3619 -2.3670 -0.3128 10 6 0.3113 -2.4053 -1.3433 11 6 0.8047 -3.2955 -2.4827 12 6 1.3653 -4.5875 -1.9492 13 6 1.4686 -5.6574 -2.8301 14 6 1.9943 -6.8620 -2.4123 15 6 2.4235 -7.0090 -1.1063 16 6 2.3179 -5.9501 -0.2283 17 6 1.7839 -4.7386 -0.6464 18 6 1.6856 -3.6259 0.3669 19 1 0.9028 -3.8604 1.0882 20 6 3.0230 -3.4815 1.0959 21 7 2.9301 -2.3973 2.0766 22 6 4.0254 -2.0116 2.7607 23 8 5.0879 -2.5625 2.5647 24 6 3.9298 -0.8958 3.7692 25 7 5.2455 -0.6688 4.3723 26 6 5.7399 -1.2757 5.4952 27 6 6.9759 -0.7793 5.6942 28 7 7.2310 0.1030 4.7167 29 6 6.1972 0.1779 3.9240 30 1 -0.4850 0.8400 0.0004 31 1 0.1237 -1.3986 -1.7165 32 1 -0.6051 -2.8191 -0.9224 33 1 1.5817 -2.7698 -3.0377 34 1 -0.0269 -3.5150 -3.1522 35 1 1.1339 -5.5446 -3.8507 36 1 2.0704 -7.6884 -3.1036 37 1 2.8399 -7.9487 -0.7748 38 1 2.6526 -6.0645 0.7921 39 1 3.8072 -3.2526 0.3744 40 1 3.2607 -4.4144 1.6071 41 1 2.0802 -1.9568 2.2336 42 1 3.2163 -1.1689 4.5466 43 1 3.5952 0.0150 3.2727 44 1 5.2356 -2.0109 6.1047 45 1 7.6455 -1.0472 6.4980 46 1 6.1176 0.8092 3.0513 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001281777175.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:08 Heat of formation + Delta-G solvation = 88.377858 kcal Electronic energy + Delta-G solvation = -29844.035942 eV Core-core repulsion = 25928.674611 eV Total energy + Delta-G solvation = -3915.361331 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.87743 -39.82085 -38.97769 -36.46432 -34.33737 -33.74053 -32.59563 -32.16830 -30.02003 -29.39599 -29.05256 -27.86164 -26.28072 -24.70158 -22.66457 -22.22916 -21.40121 -21.16368 -20.80094 -20.11170 -19.12934 -17.59816 -17.18488 -16.40456 -16.12699 -15.87843 -15.30073 -14.97521 -14.68992 -14.52082 -14.42068 -14.17365 -13.81821 -13.71089 -13.52091 -13.42912 -13.08231 -12.97391 -12.74384 -12.56515 -12.30932 -12.08272 -11.84522 -11.54434 -11.32357 -11.08662 -10.96174 -10.85314 -10.64025 -10.34442 -10.11814 -9.99118 -9.84749 -9.73549 -9.22193 -8.83647 -8.44859 -8.39929 -8.32871 -8.13800 -6.82314 -6.06725 -3.59441 1.69523 1.74033 2.16905 2.81324 2.86825 3.12224 3.25335 3.28598 3.36439 3.68343 4.10024 4.21016 4.77552 4.89282 4.93340 5.02994 5.08177 5.08745 5.14732 5.19727 5.24009 5.29911 5.43362 5.55688 5.56810 5.72933 5.81796 5.88287 5.90306 6.08289 6.11509 6.18707 6.30063 6.39297 6.40167 6.56798 6.60763 6.77130 6.78916 6.87648 6.90640 7.02301 7.19172 7.28303 7.29869 7.43435 7.58294 7.96440 8.21102 8.23779 8.57070 8.90560 9.51163 10.16618 10.99170 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010757 B = 0.004049 C = 0.003113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2602.260296 B = 6913.181725 C = 8993.824540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.015 3.985 3 Si 0.895 3.105 4 H -0.281 1.281 5 H -0.289 1.289 6 H -0.282 1.282 7 C -0.260 4.260 8 H 0.069 0.931 9 N -0.582 5.582 10 C 0.166 3.834 11 C -0.108 4.108 12 C -0.048 4.048 13 C -0.131 4.131 14 C -0.129 4.129 15 C -0.133 4.133 16 C -0.120 4.120 17 C -0.078 4.078 18 C 0.196 3.804 19 H 0.045 0.955 20 C 0.140 3.860 21 N -0.686 5.686 22 C 0.491 3.509 23 O -0.545 6.545 24 C 0.083 3.917 25 N -0.439 5.439 26 C -0.048 4.048 27 C -0.035 4.035 28 N -0.500 5.500 29 C 0.195 3.805 30 H 0.258 0.742 31 H 0.091 0.909 32 H 0.024 0.976 33 H 0.070 0.930 34 H 0.059 0.941 35 H 0.114 0.886 36 H 0.113 0.887 37 H 0.115 0.885 38 H 0.118 0.882 39 H 0.070 0.930 40 H 0.058 0.942 41 H 0.417 0.583 42 H 0.119 0.881 43 H 0.126 0.874 44 H 0.170 0.830 45 H 0.166 0.834 46 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.407 -6.933 3.468 7.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.186 4.186 3 Si 0.724 3.276 4 H -0.207 1.207 5 H -0.214 1.214 6 H -0.208 1.208 7 C -0.390 4.390 8 H 0.087 0.913 9 N -0.306 5.306 10 C 0.041 3.959 11 C -0.147 4.147 12 C -0.048 4.048 13 C -0.149 4.149 14 C -0.147 4.147 15 C -0.151 4.151 16 C -0.139 4.139 17 C -0.080 4.080 18 C 0.089 3.911 19 H 0.063 0.937 20 C 0.016 3.984 21 N -0.338 5.338 22 C 0.274 3.726 23 O -0.423 6.423 24 C -0.044 4.044 25 N -0.121 5.121 26 C -0.181 4.181 27 C -0.183 4.183 28 N -0.218 5.218 29 C -0.087 4.087 30 H 0.068 0.932 31 H 0.109 0.891 32 H 0.043 0.957 33 H 0.089 0.911 34 H 0.077 0.923 35 H 0.132 0.868 36 H 0.131 0.869 37 H 0.133 0.867 38 H 0.136 0.864 39 H 0.088 0.912 40 H 0.076 0.924 41 H 0.256 0.744 42 H 0.137 0.863 43 H 0.144 0.856 44 H 0.187 0.813 45 H 0.183 0.817 46 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 1.607 -6.727 3.193 7.618 hybrid contribution -0.841 0.467 -0.163 0.976 sum 0.766 -6.260 3.030 6.997 Atomic orbital electron populations 1.69978 1.05280 1.26105 1.51766 1.25219 0.95155 0.98323 0.99865 0.86539 0.79067 0.83500 0.78524 1.20722 1.21426 1.20847 1.19095 0.92145 0.83785 1.43943 0.91338 1.43922 1.43604 1.02948 1.40088 1.20790 0.89521 0.98870 0.86730 1.21179 0.99696 0.93616 1.00206 1.19690 0.97047 0.95466 0.92635 1.21208 1.01098 0.93354 0.99237 1.20941 1.00273 0.97360 0.96090 1.20936 1.01595 0.98546 0.94066 1.21136 1.00123 0.92957 0.99644 1.20153 0.97857 0.95144 0.94850 1.19538 0.93946 0.86597 0.91022 0.93750 1.21323 0.98216 0.88423 0.90456 1.45984 1.12124 1.36827 1.38885 1.20464 0.84839 0.84606 0.82687 1.90737 1.28396 1.56200 1.66974 1.21758 0.83629 1.01110 0.97868 1.45023 1.14015 1.31875 1.21193 1.22626 0.98181 1.04200 0.93050 1.22186 0.95539 0.99815 1.00750 1.70267 1.25175 1.20783 1.05558 1.24937 0.84770 0.97655 1.01371 0.93205 0.89128 0.95742 0.91149 0.92255 0.86789 0.86866 0.86734 0.86450 0.91203 0.92388 0.74447 0.86325 0.85574 0.81291 0.81657 0.78273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -21.95 11.56 55.49 0.64 -21.30 16 2 C 0.02 0.36 4.96 -17.43 -0.09 0.27 16 3 Si 0.89 18.94 29.58 -169.99 -5.03 13.92 16 4 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 5 H -0.29 -6.29 7.11 56.52 0.40 -5.89 16 6 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 7 C -0.26 -5.86 6.89 -15.06 -0.10 -5.96 16 8 H 0.07 1.59 5.94 -52.49 -0.31 1.28 16 9 N -0.58 -12.27 2.89 -166.34 -0.48 -12.75 16 10 C 0.17 3.45 5.58 -3.77 -0.02 3.43 16 11 C -0.11 -1.91 5.86 -28.04 -0.16 -2.08 16 12 C -0.05 -0.83 5.76 -104.60 -0.60 -1.43 16 13 C -0.13 -1.95 9.59 -39.43 -0.38 -2.33 16 14 C -0.13 -1.74 10.04 -39.69 -0.40 -2.14 16 15 C -0.13 -1.82 10.05 -39.67 -0.40 -2.22 16 16 C -0.12 -1.81 9.06 -39.46 -0.36 -2.17 16 17 C -0.08 -1.34 5.44 -104.55 -0.57 -1.91 16 18 C 0.20 3.57 3.06 -68.93 -0.21 3.36 16 19 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 20 C 0.14 2.44 4.12 -4.05 -0.02 2.42 16 21 N -0.69 -11.34 3.46 -60.30 -0.21 -11.55 16 22 C 0.49 8.12 7.89 -10.98 -0.09 8.03 16 23 O -0.54 -11.11 16.42 5.56 0.09 -11.02 16 24 C 0.08 1.08 6.63 -5.19 -0.03 1.05 16 25 N -0.44 -6.41 2.24 -119.86 -0.27 -6.68 16 26 C -0.05 -0.65 11.58 -16.56 -0.19 -0.84 16 27 C -0.04 -0.51 11.87 -17.81 -0.21 -0.73 16 28 N -0.50 -8.44 11.25 -14.67 -0.16 -8.60 16 29 C 0.20 3.08 12.56 -90.38 -1.14 1.94 16 30 H 0.26 6.30 8.31 -40.82 -0.34 5.96 16 31 H 0.09 2.10 6.22 -51.93 -0.32 1.78 16 32 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 34 H 0.06 0.92 8.11 -51.93 -0.42 0.50 16 35 H 0.11 1.47 8.05 -52.48 -0.42 1.05 16 36 H 0.11 1.23 8.06 -52.48 -0.42 0.81 16 37 H 0.11 1.27 8.06 -52.49 -0.42 0.85 16 38 H 0.12 1.58 6.69 -52.49 -0.35 1.23 16 39 H 0.07 1.41 7.83 -51.93 -0.41 1.00 16 40 H 0.06 0.93 6.65 -51.92 -0.35 0.59 16 41 H 0.42 6.92 7.29 -40.82 -0.30 6.63 16 42 H 0.12 1.16 8.14 -51.93 -0.42 0.73 16 43 H 0.13 1.57 8.14 -51.93 -0.42 1.15 16 44 H 0.17 1.76 8.06 -52.49 -0.42 1.34 16 45 H 0.17 1.91 8.06 -52.49 -0.42 1.49 16 46 H 0.20 2.72 8.06 -52.49 -0.42 2.30 16 LS Contribution 375.77 15.07 5.66 5.66 Total: -1.00 -29.54 375.77 -10.96 -40.50 By element: Atomic # 1 Polarization: 19.34 SS G_CDS: -6.24 Total: 13.10 kcal Atomic # 6 Polarization: 3.69 SS G_CDS: -4.97 Total: -1.27 kcal Atomic # 7 Polarization: -60.41 SS G_CDS: -0.48 Total: -60.89 kcal Atomic # 8 Polarization: -11.11 SS G_CDS: 0.09 Total: -11.02 kcal Atomic # 14 Polarization: 18.94 SS G_CDS: -5.03 Total: 13.92 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -29.54 -10.96 -40.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281777175.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.881 kcal (2) G-P(sol) polarization free energy of solvation -29.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.503 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds