Wall clock time and date at job start Sat Apr 11 2020 06:04:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 119.99685 * 2 1 4 4 H 1.48497 * 109.47342 * 240.00556 * 3 2 1 5 5 H 1.48506 * 109.47191 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47402 * 119.99892 * 3 2 1 7 7 C 1.38813 * 120.00558 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00048 * 195.23750 * 7 2 1 9 9 N 1.36933 * 119.99599 * 15.23862 * 7 2 1 10 10 C 1.47211 * 121.31623 * 36.61308 * 9 7 2 11 11 C 1.52780 * 107.86550 * 115.75456 * 10 9 7 12 12 C 1.50602 * 110.84526 * 47.54240 * 11 10 9 13 13 C 1.38974 * 117.61787 * 160.45392 * 12 11 10 14 14 C 1.37910 * 120.58383 * 178.89866 * 13 12 11 15 15 C 1.38259 * 119.82388 * 359.97438 * 14 13 12 16 16 C 1.37962 * 119.72006 * 0.24701 * 15 14 13 17 17 C 1.37673 * 122.86018 * 339.78505 * 12 11 10 18 18 C 1.46687 * 121.32786 * 216.65580 * 9 7 2 19 19 H 1.08998 * 109.43274 * 104.32065 * 18 9 7 20 20 C 1.52995 * 109.43186 * 344.40892 * 18 9 7 21 21 N 1.46494 * 109.47577 * 59.59841 * 20 18 9 22 22 C 1.34772 * 120.00332 * 185.61738 * 21 20 18 23 23 O 1.21276 * 120.00093 * 359.97438 * 22 21 20 24 24 C 1.50706 * 119.99838 * 179.97438 * 22 21 20 25 25 N 1.46504 * 109.46656 * 179.97438 * 24 22 21 26 26 C 1.36886 * 126.39401 * 269.99825 * 25 24 22 27 27 C 1.34677 * 106.81583 * 179.97438 * 26 25 24 28 28 N 1.34134 * 108.01711 * 359.78344 * 27 26 25 29 29 C 1.30494 * 109.25657 * 0.36562 * 28 27 26 30 30 H 0.96994 * 120.00518 * 359.97438 * 1 2 3 31 31 H 1.08994 * 109.78206 * 356.16474 * 10 9 7 32 32 H 1.09006 * 109.84781 * 235.37732 * 10 9 7 33 33 H 1.08999 * 109.20335 * 287.19513 * 11 10 9 34 34 H 1.08995 * 109.20802 * 167.89420 * 11 10 9 35 35 H 1.08003 * 119.70599 * 358.87081 * 13 12 11 36 36 H 1.08003 * 120.08540 * 179.97438 * 14 13 12 37 37 H 1.07995 * 120.14149 * 180.26596 * 15 14 13 38 38 H 1.07997 * 119.74743 * 179.97438 * 16 15 14 39 39 H 1.08991 * 109.47401 * 299.58911 * 20 18 9 40 40 H 1.09007 * 109.46889 * 179.59395 * 20 18 9 41 41 H 0.97003 * 119.99704 * 5.60956 * 21 20 18 42 42 H 1.08994 * 109.46973 * 59.99785 * 24 22 21 43 43 H 1.08997 * 109.47213 * 299.99443 * 24 22 21 44 44 H 1.07997 * 126.59535 * 359.94583 * 26 25 24 45 45 H 1.07989 * 125.98908 * 179.97438 * 27 26 25 46 46 H 1.08002 * 125.64698 * 179.89743 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6966 -1.2125 5 1 1.2850 2.7465 0.0006 6 1 3.1039 1.6966 1.2125 7 6 2.0104 -1.2021 -0.0005 8 1 3.0619 -1.2185 0.2453 9 7 1.3619 -2.3670 -0.3128 10 6 0.3113 -2.4053 -1.3433 11 6 0.8047 -3.2955 -2.4827 12 6 1.3653 -4.5875 -1.9492 13 6 1.4686 -5.6574 -2.8301 14 6 1.9943 -6.8620 -2.4123 15 6 2.4235 -7.0090 -1.1063 16 6 2.3179 -5.9501 -0.2283 17 6 1.7839 -4.7386 -0.6464 18 6 1.6856 -3.6259 0.3669 19 1 0.9028 -3.8604 1.0882 20 6 3.0230 -3.4815 1.0959 21 7 2.9301 -2.3973 2.0766 22 6 4.0254 -2.0116 2.7607 23 8 5.0879 -2.5625 2.5647 24 6 3.9298 -0.8958 3.7692 25 7 5.2455 -0.6688 4.3723 26 6 5.7399 -1.2757 5.4952 27 6 6.9759 -0.7793 5.6942 28 7 7.2310 0.1030 4.7167 29 6 6.1972 0.1779 3.9240 30 1 -0.4850 0.8400 0.0004 31 1 0.1237 -1.3986 -1.7165 32 1 -0.6051 -2.8191 -0.9224 33 1 1.5817 -2.7698 -3.0377 34 1 -0.0269 -3.5150 -3.1522 35 1 1.1339 -5.5446 -3.8507 36 1 2.0704 -7.6884 -3.1036 37 1 2.8399 -7.9487 -0.7748 38 1 2.6526 -6.0645 0.7921 39 1 3.8072 -3.2526 0.3744 40 1 3.2607 -4.4144 1.6071 41 1 2.0802 -1.9568 2.2336 42 1 3.2163 -1.1689 4.5466 43 1 3.5952 0.0150 3.2727 44 1 5.2356 -2.0109 6.1047 45 1 7.6455 -1.0472 6.4980 46 1 6.1176 0.8092 3.0513 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001281777175.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:06 Heat of formation + Delta-G solvation = 74.125793 kcal Electronic energy + Delta-G solvation = -29844.653958 eV Core-core repulsion = 25928.674611 eV Total energy + Delta-G solvation = -3915.979347 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.98639 -41.14829 -40.28635 -37.89277 -35.77393 -34.91396 -34.20972 -33.48273 -31.50953 -30.53858 -30.26993 -29.11353 -27.72411 -26.21159 -24.01804 -23.66526 -22.61169 -22.26479 -22.07187 -21.38416 -20.55921 -18.92847 -18.37094 -17.93113 -17.48826 -17.21803 -16.62002 -16.32399 -15.99169 -15.96263 -15.71685 -15.49608 -15.08839 -15.00274 -14.84926 -14.68801 -14.34729 -14.07880 -13.94447 -13.92513 -13.60113 -13.50570 -13.18125 -13.05894 -12.77413 -12.68945 -12.54391 -12.22231 -12.06266 -12.04522 -11.53864 -11.38582 -11.25965 -11.00074 -10.58140 -10.46051 -9.87801 -9.60505 -9.41752 -9.36311 -8.55144 -7.85900 -5.40067 0.54250 0.56643 1.05136 1.40747 1.52904 1.54634 1.56725 1.75041 2.23239 2.42611 2.48241 2.93251 3.29515 3.51045 3.71940 3.81308 3.84649 3.95291 3.99266 4.06508 4.09960 4.17800 4.23841 4.30982 4.40689 4.50596 4.58118 4.62172 4.64935 4.76360 4.77652 4.87385 4.96967 5.12628 5.21600 5.24281 5.31953 5.38298 5.50148 5.62291 5.66000 5.69683 5.73961 5.84440 5.92037 6.16759 6.22472 6.43972 6.62581 7.11900 7.12481 7.24215 7.78055 8.41860 9.17835 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010757 B = 0.004049 C = 0.003113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2602.260296 B = 6913.181725 C = 8993.824540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.018 4.018 3 Si 0.936 3.064 4 H -0.297 1.297 5 H -0.297 1.297 6 H -0.259 1.259 7 C -0.247 4.247 8 H 0.062 0.938 9 N -0.595 5.595 10 C 0.171 3.829 11 C -0.097 4.097 12 C -0.075 4.075 13 C -0.134 4.134 14 C -0.124 4.124 15 C -0.129 4.129 16 C -0.126 4.126 17 C -0.101 4.101 18 C 0.201 3.799 19 H 0.042 0.958 20 C 0.151 3.849 21 N -0.684 5.684 22 C 0.492 3.508 23 O -0.585 6.585 24 C 0.089 3.911 25 N -0.442 5.442 26 C -0.043 4.043 27 C -0.056 4.056 28 N -0.531 5.531 29 C 0.173 3.827 30 H 0.252 0.748 31 H 0.061 0.939 32 H 0.012 0.988 33 H 0.057 0.943 34 H 0.079 0.921 35 H 0.132 0.868 36 H 0.147 0.853 37 H 0.146 0.854 38 H 0.130 0.870 39 H 0.039 0.961 40 H 0.075 0.925 41 H 0.418 0.582 42 H 0.159 0.841 43 H 0.135 0.865 44 H 0.203 0.797 45 H 0.188 0.812 46 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.623 -9.032 4.087 9.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.217 4.217 3 Si 0.765 3.235 4 H -0.225 1.225 5 H -0.224 1.224 6 H -0.184 1.184 7 C -0.377 4.377 8 H 0.080 0.920 9 N -0.319 5.319 10 C 0.046 3.954 11 C -0.136 4.136 12 C -0.076 4.076 13 C -0.152 4.152 14 C -0.142 4.142 15 C -0.147 4.147 16 C -0.145 4.145 17 C -0.103 4.103 18 C 0.094 3.906 19 H 0.059 0.941 20 C 0.026 3.974 21 N -0.335 5.335 22 C 0.278 3.722 23 O -0.466 6.466 24 C -0.037 4.037 25 N -0.124 5.124 26 C -0.175 4.175 27 C -0.203 4.203 28 N -0.250 5.250 29 C -0.109 4.109 30 H 0.061 0.939 31 H 0.079 0.921 32 H 0.030 0.970 33 H 0.075 0.925 34 H 0.097 0.903 35 H 0.150 0.850 36 H 0.164 0.836 37 H 0.164 0.836 38 H 0.148 0.852 39 H 0.058 0.942 40 H 0.093 0.907 41 H 0.256 0.744 42 H 0.176 0.824 43 H 0.153 0.847 44 H 0.219 0.781 45 H 0.205 0.795 46 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 1.824 -8.837 3.827 9.801 hybrid contribution -0.883 0.990 -0.398 1.385 sum 0.941 -7.847 3.429 8.615 Atomic orbital electron populations 1.70082 1.06255 1.25968 1.53626 1.25608 0.95471 1.00114 1.00480 0.85864 0.78038 0.80988 0.78621 1.22454 1.22363 1.18407 1.19096 0.91737 0.84453 1.42437 0.92049 1.44073 1.43415 1.03650 1.40751 1.20598 0.89321 0.97781 0.87717 1.20975 0.99921 0.93634 0.99041 1.19744 0.98633 0.95819 0.93374 1.21425 1.00886 0.93178 0.99740 1.21356 0.98572 0.97598 0.96657 1.21345 1.00348 0.99168 0.93843 1.21311 0.99849 0.92570 1.00741 1.20138 0.99683 0.95673 0.94836 1.19539 0.93957 0.85758 0.91307 0.94100 1.21162 0.96716 0.89394 0.90103 1.45955 1.12310 1.36625 1.38562 1.21020 0.83830 0.84745 0.82641 1.90720 1.29719 1.57825 1.68353 1.21876 0.83845 0.99869 0.98110 1.45155 1.14268 1.31637 1.21375 1.23202 0.97949 1.03816 0.92574 1.22698 0.96688 0.99786 1.01113 1.70229 1.26101 1.22026 1.06629 1.25219 0.85179 0.98561 1.01936 0.93885 0.92074 0.97020 0.92472 0.90282 0.84962 0.83558 0.83615 0.85190 0.94216 0.90715 0.74363 0.82374 0.84720 0.78060 0.79479 0.77362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -46.31 11.56 21.65 0.25 -46.06 16 2 C -0.02 -0.87 4.96 84.86 0.42 -0.45 16 3 Si 0.94 39.15 29.58 68.60 2.03 41.18 16 4 H -0.30 -13.15 7.11 99.48 0.71 -12.44 16 5 H -0.30 -12.82 7.11 99.48 0.71 -12.11 16 6 H -0.26 -9.77 7.11 99.48 0.71 -9.06 16 7 C -0.25 -11.30 6.89 84.03 0.58 -10.72 16 8 H 0.06 2.89 5.94 -2.91 -0.02 2.87 16 9 N -0.60 -25.61 2.89 -680.19 -1.97 -27.58 16 10 C 0.17 7.35 5.58 86.17 0.48 7.83 16 11 C -0.10 -3.47 5.86 29.74 0.17 -3.29 16 12 C -0.08 -2.54 5.76 -19.85 -0.11 -2.65 16 13 C -0.13 -3.68 9.59 22.37 0.21 -3.47 16 14 C -0.12 -2.90 10.04 22.20 0.22 -2.67 16 15 C -0.13 -3.06 10.05 22.21 0.22 -2.84 16 16 C -0.13 -3.54 9.06 22.35 0.20 -3.34 16 17 C -0.10 -3.43 5.44 -19.82 -0.11 -3.53 16 18 C 0.20 7.34 3.06 44.24 0.14 7.47 16 19 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 20 C 0.15 5.23 4.12 86.38 0.36 5.59 16 21 N -0.68 -22.18 3.46 -463.09 -1.60 -23.79 16 22 C 0.49 15.76 7.89 87.66 0.69 16.45 16 23 O -0.59 -23.55 16.42 -3.02 -0.05 -23.60 16 24 C 0.09 2.12 6.63 85.63 0.57 2.69 16 25 N -0.44 -12.15 2.24 -533.14 -1.19 -13.34 16 26 C -0.04 -1.06 11.58 83.09 0.96 -0.10 16 27 C -0.06 -1.56 11.87 83.52 0.99 -0.57 16 28 N -0.53 -17.68 11.25 -200.31 -2.25 -19.94 16 29 C 0.17 5.36 12.56 180.26 2.26 7.62 16 30 H 0.25 12.63 8.31 -92.71 -0.77 11.86 16 31 H 0.06 2.96 6.22 -2.39 -0.01 2.95 16 32 H 0.01 0.52 8.14 -2.38 -0.02 0.50 16 33 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 34 H 0.08 2.44 8.11 -2.39 -0.02 2.42 16 35 H 0.13 3.05 8.05 -2.91 -0.02 3.03 16 36 H 0.15 2.45 8.06 -2.91 -0.02 2.43 16 37 H 0.15 2.54 8.06 -2.91 -0.02 2.51 16 38 H 0.13 3.21 6.69 -2.91 -0.02 3.19 16 39 H 0.04 1.62 7.83 -2.39 -0.02 1.60 16 40 H 0.07 2.33 6.65 -2.38 -0.02 2.31 16 41 H 0.42 13.61 7.29 -92.71 -0.68 12.94 16 42 H 0.16 2.52 8.14 -2.39 -0.02 2.50 16 43 H 0.13 3.05 8.14 -2.39 -0.02 3.03 16 44 H 0.20 3.48 8.06 -2.91 -0.02 3.46 16 45 H 0.19 4.04 8.06 -2.92 -0.02 4.01 16 46 H 0.21 5.66 8.06 -2.91 -0.02 5.63 16 Total: -1.00 -65.64 375.77 3.81 -61.83 By element: Atomic # 1 Polarization: 36.95 SS G_CDS: 0.33 Total: 37.28 kcal Atomic # 6 Polarization: 5.75 SS G_CDS: 8.27 Total: 14.01 kcal Atomic # 7 Polarization: -123.93 SS G_CDS: -6.77 Total: -130.70 kcal Atomic # 8 Polarization: -23.55 SS G_CDS: -0.05 Total: -23.60 kcal Atomic # 14 Polarization: 39.15 SS G_CDS: 2.03 Total: 41.18 kcal Total: -65.64 3.81 -61.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281777175.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.956 kcal (2) G-P(sol) polarization free energy of solvation -65.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.830 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds