Wall clock time and date at job start Sat Apr 11 2020 06:04:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 120.00106 * 2 1 4 4 H 1.48492 * 109.47407 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46898 * 300.00410 * 3 2 1 6 6 H 1.48501 * 109.46905 * 60.00118 * 3 2 1 7 7 C 1.38813 * 120.00057 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99801 * 179.97438 * 7 2 1 9 9 N 1.36933 * 120.00301 * 0.02562 * 7 2 1 10 10 C 1.46502 * 120.00367 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47192 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47010 * 180.02562 * 11 10 9 13 13 C 1.52999 * 109.46931 * 180.02562 * 12 11 10 14 14 H 1.08999 * 109.46952 * 304.99167 * 13 12 11 15 15 N 1.46496 * 109.47381 * 65.00159 * 13 12 11 16 16 C 1.34773 * 120.00030 * 205.00120 * 15 13 12 17 17 O 1.21558 * 119.99847 * 359.97438 * 16 15 13 18 18 C 1.47835 * 120.00282 * 179.97438 * 16 15 13 19 19 C 1.39948 * 120.93699 * 359.94958 * 18 16 15 20 20 N 1.32144 * 118.92292 * 180.02562 * 19 18 16 21 21 C 1.31874 * 120.96683 * 0.02562 * 20 19 18 22 22 N 1.31870 * 122.09686 * 0.02562 * 21 20 19 23 23 C 1.32145 * 120.96699 * 359.97438 * 22 21 20 24 24 C 1.50702 * 109.46653 * 184.99910 * 13 12 11 25 25 C 1.38234 * 120.00260 * 279.72229 * 24 13 12 26 26 C 1.38231 * 120.00039 * 179.79365 * 25 24 13 27 27 C 1.38229 * 120.00297 * 0.44108 * 26 25 24 28 28 C 1.38236 * 119.99665 * 359.81294 * 27 26 25 29 29 C 1.38231 * 120.00415 * 359.97438 * 28 27 26 30 30 H 0.96995 * 120.00539 * 359.97438 * 1 2 3 31 31 H 0.97004 * 119.99728 * 359.97438 * 9 7 2 32 32 H 1.08997 * 109.46903 * 59.99768 * 10 9 7 33 33 H 1.08992 * 109.47010 * 299.99982 * 10 9 7 34 34 H 1.08997 * 109.46960 * 60.00325 * 11 10 9 35 35 H 1.09004 * 109.47176 * 300.00155 * 11 10 9 36 36 H 1.09002 * 109.47010 * 59.99837 * 12 11 10 37 37 H 1.09000 * 109.46770 * 300.00167 * 12 11 10 38 38 H 0.96998 * 120.00179 * 24.99578 * 15 13 12 39 39 H 1.07995 * 120.53671 * 0.05244 * 19 18 16 40 40 H 1.07999 * 118.95094 * 179.97438 * 21 20 19 41 41 H 1.07994 * 120.53751 * 180.02562 * 23 22 21 42 42 H 1.08007 * 119.99844 * 359.97438 * 25 24 13 43 43 H 1.08000 * 119.99848 * 180.27823 * 26 25 24 44 44 H 1.08002 * 120.00091 * 179.84108 * 27 26 25 45 45 H 1.08000 * 119.99690 * 180.02562 * 28 27 26 46 46 H 1.07994 * 120.00252 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8913 2.3964 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3257 -2.3881 -0.0016 10 6 2.0582 -3.6568 -0.0016 11 6 1.0639 -4.8198 -0.0022 12 6 1.8290 -6.1447 -0.0016 13 6 0.8347 -7.3077 -0.0029 14 1 0.1498 -7.2010 0.8383 15 7 0.0751 -7.2994 -1.2555 16 6 -1.1495 -7.8600 -1.3047 17 8 -1.6235 -8.3729 -0.3098 18 6 -1.9163 -7.8512 -2.5686 19 6 -1.3900 -7.2652 -3.7254 20 7 -2.1100 -7.2794 -4.8333 21 6 -3.3063 -7.8339 -4.8581 22 7 -3.8403 -8.3959 -3.7914 23 6 -3.1900 -8.4267 -2.6415 24 6 1.5841 -8.6092 0.1216 25 6 2.1821 -9.1716 -0.9906 26 6 2.8731 -10.3633 -0.8756 27 6 2.9583 -10.9973 0.3498 28 6 2.3558 -10.4376 1.4609 29 6 1.6686 -9.2437 1.3468 30 1 -0.4851 0.8400 0.0004 31 1 0.3556 -2.3881 -0.0016 32 1 2.6841 -3.7149 0.8888 33 1 2.6855 -3.7141 -0.8911 34 1 0.4377 -4.7618 -0.8925 35 1 0.4369 -4.7622 0.8875 36 1 2.4550 -6.2024 0.8888 37 1 2.4563 -6.2025 -0.8911 38 1 0.4535 -6.8904 -2.0495 39 1 -0.4111 -6.8093 -3.7129 40 1 -3.8668 -7.8267 -5.7812 41 1 -3.6338 -8.8891 -1.7723 42 1 2.1120 -8.6783 -1.9489 43 1 3.3441 -10.8003 -1.7436 44 1 3.4960 -11.9297 0.4391 45 1 2.4228 -10.9328 2.4184 46 1 1.1976 -8.8067 2.2148 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001283433607.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:16 Heat of formation + Delta-G solvation = 44.448010 kcal Electronic energy + Delta-G solvation = -28220.877310 eV Core-core repulsion = 24303.611038 eV Total energy + Delta-G solvation = -3917.266272 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.96 seconds Orbital eigenvalues (eV) -41.55907 -40.24295 -38.92249 -36.61811 -34.94443 -34.21311 -33.17949 -32.32921 -31.39195 -31.00477 -30.15379 -27.22262 -25.54783 -24.91593 -24.13682 -22.86346 -22.39609 -21.55482 -20.86882 -20.62263 -18.51371 -18.04136 -17.62642 -17.12523 -16.95099 -16.27365 -15.73864 -15.34024 -14.98106 -14.79847 -14.73665 -14.48995 -14.23400 -14.03851 -13.93509 -13.66090 -13.56640 -13.33027 -13.05426 -12.95792 -12.29159 -12.02016 -11.88695 -11.72544 -11.29278 -11.28187 -11.18754 -10.90280 -10.87017 -10.59662 -10.52577 -10.21249 -10.12827 -10.03316 -9.74121 -9.70076 -9.40795 -9.07997 -8.89406 -8.87667 -6.93823 -5.77988 -3.06914 0.05183 0.63259 1.14824 1.23805 2.54640 2.75536 3.42189 3.44961 3.47643 3.50097 3.60722 3.65195 3.75242 4.03757 4.31066 4.44616 4.52594 4.61138 4.67348 4.79425 4.87889 4.92448 4.94923 5.07180 5.27933 5.29907 5.32523 5.41109 5.53233 5.59746 5.76469 5.79433 5.85273 5.85630 5.96157 6.09891 6.14649 6.24837 6.30101 6.33319 6.35022 6.42871 6.47955 6.80454 6.81891 6.84152 7.13409 7.58189 7.68849 7.85193 8.40912 9.51950 10.10286 10.44346 11.44995 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.007519 B = 0.003042 C = 0.002312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3722.851215 B = 9203.161662 C =12107.006562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.015 4.015 3 Si 0.907 3.093 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.240 4.240 8 H 0.071 0.929 9 N -0.735 5.735 10 C 0.153 3.847 11 C -0.126 4.126 12 C -0.118 4.118 13 C 0.187 3.813 14 H 0.102 0.898 15 N -0.712 5.712 16 C 0.573 3.427 17 O -0.524 6.524 18 C -0.240 4.240 19 C 0.186 3.814 20 N -0.519 5.519 21 C 0.314 3.686 22 N -0.522 5.522 23 C 0.209 3.791 24 C -0.090 4.090 25 C -0.106 4.106 26 C -0.122 4.122 27 C -0.123 4.123 28 C -0.120 4.120 29 C -0.103 4.103 30 H 0.255 0.745 31 H 0.383 0.617 32 H 0.018 0.982 33 H 0.017 0.983 34 H 0.061 0.939 35 H 0.064 0.936 36 H 0.084 0.916 37 H 0.071 0.929 38 H 0.401 0.599 39 H 0.172 0.828 40 H 0.202 0.798 41 H 0.182 0.818 42 H 0.117 0.883 43 H 0.119 0.881 44 H 0.119 0.881 45 H 0.121 0.879 46 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.515 -24.592 -5.337 25.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.211 4.211 3 Si 0.738 3.262 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.218 1.218 7 C -0.371 4.371 8 H 0.089 0.911 9 N -0.379 5.379 10 C 0.026 3.974 11 C -0.164 4.164 12 C -0.156 4.156 13 C 0.083 3.917 14 H 0.120 0.880 15 N -0.363 5.363 16 C 0.358 3.642 17 O -0.401 6.401 18 C -0.248 4.248 19 C 0.019 3.981 20 N -0.233 5.233 21 C 0.027 3.973 22 N -0.235 5.235 23 C 0.042 3.958 24 C -0.091 4.091 25 C -0.125 4.125 26 C -0.140 4.140 27 C -0.141 4.141 28 C -0.138 4.138 29 C -0.121 4.121 30 H 0.064 0.936 31 H 0.217 0.783 32 H 0.036 0.964 33 H 0.035 0.965 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.102 0.898 37 H 0.089 0.911 38 H 0.236 0.764 39 H 0.189 0.811 40 H 0.219 0.781 41 H 0.198 0.802 42 H 0.135 0.865 43 H 0.137 0.863 44 H 0.137 0.863 45 H 0.139 0.861 46 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -0.209 -24.815 -5.480 25.414 hybrid contribution 0.839 1.180 0.321 1.483 sum 0.630 -23.635 -5.159 24.200 Atomic orbital electron populations 1.69667 1.05131 1.25561 1.57853 1.24753 0.95531 0.97741 1.03043 0.86119 0.78784 0.84101 0.77214 1.20533 1.21852 1.21838 1.19278 0.91057 0.84198 1.42559 0.91146 1.42379 1.05878 1.00098 1.89511 1.20630 0.93469 0.85588 0.97739 1.21752 0.98882 0.93330 1.02396 1.21849 0.97279 0.92745 1.03737 1.20006 0.92688 0.91788 0.87236 0.87999 1.45914 1.17126 1.59168 1.14091 1.17726 0.81107 0.78282 0.87111 1.90807 1.69152 1.44592 1.35541 1.21827 0.99449 1.06711 0.96773 1.23509 0.98638 0.89197 0.86789 1.68493 1.08016 1.18027 1.28726 1.25310 0.88559 0.86425 0.96990 1.68590 1.36555 1.18343 1.00047 1.23528 0.88510 0.88111 0.95667 1.20199 0.98350 0.96629 0.93912 1.20894 0.97520 0.95940 0.98122 1.21107 0.99529 0.95768 0.97637 1.21139 0.99990 0.99948 0.93058 1.21130 0.98001 0.95951 0.98680 1.21032 0.98701 0.95200 0.97186 0.93551 0.78346 0.96418 0.96494 0.91998 0.91716 0.89777 0.91053 0.76368 0.81107 0.78115 0.80150 0.86470 0.86272 0.86318 0.86073 0.85807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.37 13.06 55.49 0.72 -27.65 16 2 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 3 Si 0.91 22.41 29.55 -169.99 -5.02 17.39 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 6 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 7 C -0.24 -6.73 9.99 -15.06 -0.15 -6.88 16 8 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 9 N -0.73 -18.54 5.60 -59.91 -0.34 -18.87 16 10 C 0.15 2.94 6.26 -4.04 -0.03 2.92 16 11 C -0.13 -1.83 5.22 -26.73 -0.14 -1.97 16 12 C -0.12 -1.27 4.73 -26.73 -0.13 -1.40 16 13 C 0.19 1.96 2.17 -69.08 -0.15 1.81 16 14 H 0.10 1.23 7.44 -51.93 -0.39 0.84 16 15 N -0.71 -6.79 3.72 -55.88 -0.21 -7.00 16 16 C 0.57 6.49 7.74 -12.34 -0.10 6.40 16 17 O -0.52 -7.59 16.11 5.31 0.09 -7.51 16 18 C -0.24 -2.40 5.91 -104.69 -0.62 -3.02 16 19 C 0.19 1.67 10.81 -16.78 -0.18 1.48 16 20 N -0.52 -5.11 10.42 -14.25 -0.15 -5.26 16 21 C 0.31 2.79 12.27 -92.02 -1.13 1.66 16 22 N -0.52 -5.28 10.42 -14.24 -0.15 -5.43 16 23 C 0.21 2.12 10.88 -16.78 -0.18 1.93 16 24 C -0.09 -0.93 4.91 -104.62 -0.51 -1.44 16 25 C -0.11 -1.01 9.33 -39.59 -0.37 -1.38 16 26 C -0.12 -1.09 10.05 -39.59 -0.40 -1.49 16 27 C -0.12 -1.08 10.05 -39.59 -0.40 -1.48 16 28 C -0.12 -1.11 10.05 -39.58 -0.40 -1.50 16 29 C -0.10 -1.06 9.67 -39.58 -0.38 -1.44 16 30 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 31 H 0.38 10.20 7.67 -40.82 -0.31 9.89 16 32 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 34 H 0.06 0.89 7.75 -51.93 -0.40 0.49 16 35 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 36 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.40 2.94 6.74 -40.82 -0.28 2.67 16 39 H 0.17 1.06 6.54 -52.49 -0.34 0.72 16 40 H 0.20 1.09 8.06 -52.49 -0.42 0.67 16 41 H 0.18 1.65 7.74 -52.49 -0.41 1.25 16 42 H 0.12 0.93 7.71 -52.48 -0.40 0.52 16 43 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 44 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 45 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 46 H 0.12 1.16 8.04 -52.49 -0.42 0.74 16 LS Contribution 394.44 15.07 5.94 5.94 Total: -1.00 -35.05 394.44 -10.77 -45.82 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: -6.30 Total: 8.89 kcal Atomic # 6 Polarization: -0.97 SS G_CDS: -5.35 Total: -6.33 kcal Atomic # 7 Polarization: -64.09 SS G_CDS: -0.12 Total: -64.21 kcal Atomic # 8 Polarization: -7.59 SS G_CDS: 0.09 Total: -7.51 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.39 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -35.05 -10.77 -45.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283433607.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.267 kcal (2) G-P(sol) polarization free energy of solvation -35.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.819 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.96 seconds