Wall clock time and date at job start Sat Apr 11 2020 06:04:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 120.00106 * 2 1 4 4 H 1.48492 * 109.47407 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46898 * 300.00410 * 3 2 1 6 6 H 1.48501 * 109.46905 * 60.00118 * 3 2 1 7 7 C 1.38813 * 120.00057 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99801 * 179.97438 * 7 2 1 9 9 N 1.36933 * 120.00301 * 0.02562 * 7 2 1 10 10 C 1.46502 * 120.00367 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47192 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47010 * 180.02562 * 11 10 9 13 13 C 1.52999 * 109.46931 * 180.02562 * 12 11 10 14 14 H 1.08999 * 109.46952 * 304.99167 * 13 12 11 15 15 N 1.46496 * 109.47381 * 65.00159 * 13 12 11 16 16 C 1.34773 * 120.00030 * 205.00120 * 15 13 12 17 17 O 1.21558 * 119.99847 * 359.97438 * 16 15 13 18 18 C 1.47835 * 120.00282 * 179.97438 * 16 15 13 19 19 C 1.39948 * 120.93699 * 359.94958 * 18 16 15 20 20 N 1.32144 * 118.92292 * 180.02562 * 19 18 16 21 21 C 1.31874 * 120.96683 * 0.02562 * 20 19 18 22 22 N 1.31870 * 122.09686 * 0.02562 * 21 20 19 23 23 C 1.32145 * 120.96699 * 359.97438 * 22 21 20 24 24 C 1.50702 * 109.46653 * 184.99910 * 13 12 11 25 25 C 1.38234 * 120.00260 * 279.72229 * 24 13 12 26 26 C 1.38231 * 120.00039 * 179.79365 * 25 24 13 27 27 C 1.38229 * 120.00297 * 0.44108 * 26 25 24 28 28 C 1.38236 * 119.99665 * 359.81294 * 27 26 25 29 29 C 1.38231 * 120.00415 * 359.97438 * 28 27 26 30 30 H 0.96995 * 120.00539 * 359.97438 * 1 2 3 31 31 H 0.97004 * 119.99728 * 359.97438 * 9 7 2 32 32 H 1.08997 * 109.46903 * 59.99768 * 10 9 7 33 33 H 1.08992 * 109.47010 * 299.99982 * 10 9 7 34 34 H 1.08997 * 109.46960 * 60.00325 * 11 10 9 35 35 H 1.09004 * 109.47176 * 300.00155 * 11 10 9 36 36 H 1.09002 * 109.47010 * 59.99837 * 12 11 10 37 37 H 1.09000 * 109.46770 * 300.00167 * 12 11 10 38 38 H 0.96998 * 120.00179 * 24.99578 * 15 13 12 39 39 H 1.07995 * 120.53671 * 0.05244 * 19 18 16 40 40 H 1.07999 * 118.95094 * 179.97438 * 21 20 19 41 41 H 1.07994 * 120.53751 * 180.02562 * 23 22 21 42 42 H 1.08007 * 119.99844 * 359.97438 * 25 24 13 43 43 H 1.08000 * 119.99848 * 180.27823 * 26 25 24 44 44 H 1.08002 * 120.00091 * 179.84108 * 27 26 25 45 45 H 1.08000 * 119.99690 * 180.02562 * 28 27 26 46 46 H 1.07994 * 120.00252 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8913 2.3964 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3257 -2.3881 -0.0016 10 6 2.0582 -3.6568 -0.0016 11 6 1.0639 -4.8198 -0.0022 12 6 1.8290 -6.1447 -0.0016 13 6 0.8347 -7.3077 -0.0029 14 1 0.1498 -7.2010 0.8383 15 7 0.0751 -7.2994 -1.2555 16 6 -1.1495 -7.8600 -1.3047 17 8 -1.6235 -8.3729 -0.3098 18 6 -1.9163 -7.8512 -2.5686 19 6 -1.3900 -7.2652 -3.7254 20 7 -2.1100 -7.2794 -4.8333 21 6 -3.3063 -7.8339 -4.8581 22 7 -3.8403 -8.3959 -3.7914 23 6 -3.1900 -8.4267 -2.6415 24 6 1.5841 -8.6092 0.1216 25 6 2.1821 -9.1716 -0.9906 26 6 2.8731 -10.3633 -0.8756 27 6 2.9583 -10.9973 0.3498 28 6 2.3558 -10.4376 1.4609 29 6 1.6686 -9.2437 1.3468 30 1 -0.4851 0.8400 0.0004 31 1 0.3556 -2.3881 -0.0016 32 1 2.6841 -3.7149 0.8888 33 1 2.6855 -3.7141 -0.8911 34 1 0.4377 -4.7618 -0.8925 35 1 0.4369 -4.7622 0.8875 36 1 2.4550 -6.2024 0.8888 37 1 2.4563 -6.2025 -0.8911 38 1 0.4535 -6.8904 -2.0495 39 1 -0.4111 -6.8093 -3.7129 40 1 -3.8668 -7.8267 -5.7812 41 1 -3.6338 -8.8891 -1.7723 42 1 2.1120 -8.6783 -1.9489 43 1 3.3441 -10.8003 -1.7436 44 1 3.4960 -11.9297 0.4391 45 1 2.4228 -10.9328 2.4184 46 1 1.1976 -8.8067 2.2148 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001283433607.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:15 Heat of formation + Delta-G solvation = 23.299027 kcal Electronic energy + Delta-G solvation = -28221.794399 eV Core-core repulsion = 24303.611038 eV Total energy + Delta-G solvation = -3918.183361 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.31518 -41.04661 -39.70780 -37.74728 -36.44886 -35.01380 -34.30644 -33.63433 -32.28564 -31.72810 -31.60617 -28.46676 -26.51691 -25.79053 -25.43532 -23.87319 -23.49782 -22.40384 -22.19870 -21.44615 -19.32354 -19.10665 -18.77182 -18.32931 -17.77316 -17.15745 -16.66395 -16.52379 -16.11449 -15.90501 -15.77658 -15.43978 -15.30157 -15.25830 -14.90676 -14.72259 -14.58068 -14.28337 -14.17681 -13.89184 -13.49355 -13.21697 -12.93232 -12.81326 -12.73537 -12.56072 -12.16435 -12.07499 -12.03616 -11.92495 -11.87446 -11.73685 -11.64471 -11.13476 -10.94193 -10.90931 -10.43768 -10.27579 -9.78002 -9.61121 -8.99975 -7.95900 -5.24773 -0.68799 -0.10468 0.43441 0.53911 1.47487 1.48145 1.58387 1.70098 1.93744 2.55724 2.70321 2.89440 3.00643 3.06863 3.31942 3.38382 3.54886 3.59063 3.78333 3.91132 3.99540 4.08635 4.14496 4.20032 4.29495 4.31684 4.43395 4.55985 4.59745 4.65234 4.72945 4.75401 4.85377 4.89645 5.07021 5.11601 5.15036 5.17243 5.26631 5.42398 5.42733 5.51015 5.59551 5.65177 5.70572 5.73612 6.13977 6.26952 6.34196 6.86685 7.02154 7.32786 8.10277 8.31708 9.27991 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.007519 B = 0.003042 C = 0.002312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3722.851215 B = 9203.161662 C =12107.006562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.078 4.078 3 Si 0.973 3.027 4 H -0.264 1.264 5 H -0.293 1.293 6 H -0.294 1.294 7 C -0.244 4.244 8 H 0.077 0.923 9 N -0.750 5.750 10 C 0.150 3.850 11 C -0.112 4.112 12 C -0.103 4.103 13 C 0.195 3.805 14 H 0.082 0.918 15 N -0.701 5.701 16 C 0.574 3.426 17 O -0.562 6.562 18 C -0.249 4.249 19 C 0.191 3.809 20 N -0.534 5.534 21 C 0.313 3.687 22 N -0.536 5.536 23 C 0.201 3.799 24 C -0.102 4.102 25 C -0.114 4.114 26 C -0.129 4.129 27 C -0.128 4.128 28 C -0.129 4.129 29 C -0.123 4.123 30 H 0.251 0.749 31 H 0.372 0.628 32 H 0.018 0.982 33 H 0.028 0.972 34 H 0.064 0.936 35 H 0.049 0.951 36 H 0.087 0.913 37 H 0.091 0.909 38 H 0.413 0.587 39 H 0.198 0.802 40 H 0.233 0.767 41 H 0.182 0.818 42 H 0.133 0.867 43 H 0.140 0.860 44 H 0.140 0.860 45 H 0.137 0.863 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.264 -25.432 -6.634 26.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.270 4.270 3 Si 0.802 3.198 4 H -0.188 1.188 5 H -0.220 1.220 6 H -0.222 1.222 7 C -0.376 4.376 8 H 0.095 0.905 9 N -0.393 5.393 10 C 0.024 3.976 11 C -0.150 4.150 12 C -0.141 4.141 13 C 0.091 3.909 14 H 0.100 0.900 15 N -0.352 5.352 16 C 0.361 3.639 17 O -0.442 6.442 18 C -0.256 4.256 19 C 0.024 3.976 20 N -0.247 5.247 21 C 0.028 3.972 22 N -0.250 5.250 23 C 0.035 3.965 24 C -0.103 4.103 25 C -0.132 4.132 26 C -0.147 4.147 27 C -0.146 4.146 28 C -0.146 4.146 29 C -0.141 4.141 30 H 0.059 0.941 31 H 0.203 0.797 32 H 0.036 0.964 33 H 0.046 0.954 34 H 0.082 0.918 35 H 0.068 0.932 36 H 0.106 0.894 37 H 0.109 0.891 38 H 0.251 0.749 39 H 0.214 0.786 40 H 0.249 0.751 41 H 0.199 0.801 42 H 0.151 0.849 43 H 0.158 0.842 44 H 0.158 0.842 45 H 0.155 0.845 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 1.596 -25.679 -6.797 26.611 hybrid contribution 0.320 1.350 0.715 1.561 sum 1.916 -24.329 -6.082 25.151 Atomic orbital electron populations 1.69823 1.06687 1.25997 1.59697 1.25590 0.96397 1.01212 1.03787 0.85073 0.78328 0.79732 0.76649 1.18838 1.21972 1.22160 1.19698 0.91565 0.85420 1.40928 0.90515 1.42648 1.05647 1.01517 1.89441 1.20844 0.94200 0.84717 0.97860 1.21591 0.97980 0.93574 1.01834 1.21712 0.96991 0.90521 1.04916 1.19791 0.92150 0.92050 0.86927 0.90020 1.45817 1.16560 1.58522 1.14336 1.17900 0.81321 0.77685 0.87040 1.90788 1.70056 1.46422 1.36901 1.21703 0.99469 1.07837 0.96597 1.23915 0.99406 0.88225 0.86067 1.68590 1.08529 1.18636 1.28938 1.25969 0.88480 0.85135 0.97638 1.68650 1.36873 1.19116 1.00314 1.23650 0.88800 0.88088 0.95978 1.20176 0.99034 0.96624 0.94458 1.21125 0.97369 0.96357 0.98391 1.21434 0.99199 0.95540 0.98498 1.21476 0.99630 1.00665 0.92841 1.21391 0.97751 0.95679 0.99822 1.21211 0.99456 0.96044 0.97402 0.94051 0.79652 0.96416 0.95444 0.91776 0.93178 0.89441 0.89054 0.74893 0.78573 0.75111 0.80066 0.84940 0.84201 0.84184 0.84530 0.85967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.78 13.06 21.65 0.28 -59.49 16 2 C -0.08 -4.48 5.50 84.86 0.47 -4.01 16 3 Si 0.97 46.00 29.55 68.60 2.03 48.03 16 4 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 5 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 6 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 7 C -0.24 -13.61 9.99 84.03 0.84 -12.77 16 8 H 0.08 4.09 7.83 -2.91 -0.02 4.07 16 9 N -0.75 -37.83 5.60 -343.46 -1.92 -39.75 16 10 C 0.15 5.61 6.26 86.38 0.54 6.15 16 11 C -0.11 -3.17 5.22 30.59 0.16 -3.01 16 12 C -0.10 -2.08 4.73 30.59 0.14 -1.93 16 13 C 0.20 3.96 2.17 44.25 0.10 4.06 16 14 H 0.08 2.02 7.44 -2.39 -0.02 2.00 16 15 N -0.70 -12.65 3.72 -448.99 -1.67 -14.32 16 16 C 0.57 12.92 7.74 86.78 0.67 13.60 16 17 O -0.56 -16.72 16.11 -3.90 -0.06 -16.79 16 18 C -0.25 -4.84 5.91 -19.91 -0.12 -4.95 16 19 C 0.19 3.13 10.81 85.06 0.92 4.05 16 20 N -0.53 -9.62 10.42 -198.98 -2.07 -11.70 16 21 C 0.31 5.13 12.27 180.84 2.22 7.35 16 22 N -0.54 -10.49 10.42 -198.98 -2.07 -12.57 16 23 C 0.20 4.08 10.88 85.06 0.93 5.01 16 24 C -0.10 -2.02 4.91 -19.86 -0.10 -2.11 16 25 C -0.11 -1.95 9.33 22.27 0.21 -1.74 16 26 C -0.13 -2.01 10.05 22.27 0.22 -1.78 16 27 C -0.13 -1.99 10.05 22.27 0.22 -1.77 16 28 C -0.13 -2.23 10.05 22.27 0.22 -2.01 16 29 C -0.12 -2.48 9.67 22.27 0.22 -2.26 16 30 H 0.25 14.93 8.31 -92.71 -0.77 14.16 16 31 H 0.37 20.10 7.67 -92.71 -0.71 19.39 16 32 H 0.02 0.67 8.14 -2.39 -0.02 0.66 16 33 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.06 1.79 7.75 -2.39 -0.02 1.77 16 35 H 0.05 1.57 8.14 -2.38 -0.02 1.55 16 36 H 0.09 1.75 8.14 -2.39 -0.02 1.74 16 37 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.41 5.22 6.74 -92.71 -0.62 4.59 16 39 H 0.20 1.96 6.54 -2.91 -0.02 1.94 16 40 H 0.23 2.03 8.06 -2.91 -0.02 2.00 16 41 H 0.18 3.47 7.74 -2.91 -0.02 3.45 16 42 H 0.13 1.74 7.71 -2.91 -0.02 1.72 16 43 H 0.14 1.53 8.06 -2.91 -0.02 1.51 16 44 H 0.14 1.50 8.06 -2.91 -0.02 1.48 16 45 H 0.14 1.82 8.06 -2.91 -0.02 1.80 16 46 H 0.12 2.37 8.04 -2.91 -0.02 2.35 16 Total: -1.00 -75.40 394.44 2.05 -73.35 By element: Atomic # 1 Polarization: 31.72 SS G_CDS: -0.32 Total: 31.39 kcal Atomic # 6 Polarization: -6.02 SS G_CDS: 7.86 Total: 1.84 kcal Atomic # 7 Polarization: -130.37 SS G_CDS: -7.46 Total: -137.83 kcal Atomic # 8 Polarization: -16.72 SS G_CDS: -0.06 Total: -16.79 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 2.03 Total: 48.03 kcal Total: -75.40 2.05 -73.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283433607.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.651 kcal (2) G-P(sol) polarization free energy of solvation -75.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.352 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds