Wall clock time and date at job start Sat Apr 11 2020 06:04:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86794 * 120.00116 * 2 1 4 4 H 1.48508 * 109.46991 * 240.00125 * 3 2 1 5 5 H 1.48506 * 109.47508 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47596 * 119.99833 * 3 2 1 7 7 C 1.38813 * 119.99915 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00168 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99939 * 0.02562 * 7 2 1 10 10 C 1.46504 * 119.99850 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.46718 * 180.02562 * 10 9 7 12 12 H 1.08995 * 109.49836 * 55.06264 * 11 10 9 13 13 C 1.53037 * 109.52098 * 175.14452 * 11 10 9 14 14 C 1.53042 * 109.53891 * 181.33044 * 13 11 10 15 15 C 1.53626 * 109.24133 * 298.50991 * 14 13 11 16 16 N 1.46933 * 108.54250 * 54.85479 * 15 14 13 17 17 C 1.34771 * 120.62743 * 126.36626 * 16 15 14 18 18 O 1.21593 * 119.99803 * 185.51585 * 17 16 15 19 19 C 1.47510 * 120.00378 * 5.51562 * 17 16 15 20 20 C 1.38671 * 120.33969 * 53.88534 * 19 17 16 21 21 C 1.38984 * 120.63199 * 180.02562 * 20 19 17 22 22 C 1.36221 * 121.14360 * 359.95287 * 21 20 19 23 23 C 1.40691 * 120.17036 * 0.02917 * 22 21 20 24 24 N 1.33757 * 120.98125 * 179.97438 * 23 22 21 25 25 C 1.31335 * 119.72864 * 179.97438 * 24 23 22 26 26 C 1.39646 * 120.68769 * 359.97438 * 25 24 23 27 27 N 1.31446 * 120.63671 * 0.04659 * 26 25 24 28 28 C 1.33487 * 119.72477 * 359.97185 * 27 26 25 29 29 C 1.46925 * 118.73587 * 306.09761 * 16 15 14 30 30 H 0.97004 * 120.00173 * 359.97438 * 1 2 3 31 31 H 0.97007 * 119.99879 * 359.97438 * 9 7 2 32 32 H 1.08991 * 109.46952 * 60.00232 * 10 9 7 33 33 H 1.08995 * 109.46811 * 299.99567 * 10 9 7 34 34 H 1.08994 * 109.46253 * 301.35090 * 13 11 10 35 35 H 1.09007 * 109.46125 * 61.32468 * 13 11 10 36 36 H 1.09000 * 109.49613 * 58.58427 * 14 13 11 37 37 H 1.08999 * 109.49670 * 178.65257 * 14 13 11 38 38 H 1.08997 * 109.74104 * 295.11729 * 15 14 13 39 39 H 1.09000 * 109.66570 * 174.54871 * 15 14 13 40 40 H 1.07994 * 119.68101 * 359.97438 * 20 19 17 41 41 H 1.08002 * 119.42742 * 179.97438 * 21 20 19 42 42 H 1.08001 * 119.91455 * 180.02562 * 22 21 20 43 43 H 1.07998 * 119.65721 * 180.02562 * 25 24 23 44 44 H 1.07998 * 119.68183 * 180.02562 * 26 25 24 45 45 H 1.09002 * 109.58230 * 173.64652 * 29 16 15 46 46 H 1.09001 * 109.58368 * 293.92191 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6963 -1.2126 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 1.0637 -4.8197 -0.0001 12 1 0.3804 -4.7136 -0.8426 13 6 1.8237 -6.1424 -0.1222 14 6 0.8277 -7.3038 -0.1563 15 6 0.0293 -7.3247 1.1561 16 7 -0.5887 -6.0056 1.3481 17 6 -1.9146 -5.8932 1.5621 18 8 -2.4300 -4.7934 1.6195 19 6 -2.7405 -7.1042 1.7266 20 6 -2.4035 -8.0584 2.6747 21 6 -3.1771 -9.2020 2.8345 22 6 -4.2833 -9.4169 2.0692 23 6 -4.6630 -8.4753 1.0951 24 7 -5.7458 -8.6702 0.3344 25 6 -6.0779 -7.7749 -0.5673 26 6 -5.3125 -6.6198 -0.7404 27 7 -4.2443 -6.4075 -0.0044 28 6 -3.8872 -7.3040 0.9180 29 6 0.2672 -4.8120 1.3084 30 1 -0.4850 0.8401 0.0004 31 1 0.3554 -2.3880 0.0005 32 1 2.6846 -3.7145 0.8905 33 1 2.6846 -3.7145 -0.8895 34 1 2.4108 -6.1404 -1.0405 35 1 2.4887 -6.2595 0.7336 36 1 0.1465 -7.1743 -0.9973 37 1 1.3685 -8.2437 -0.2673 38 1 0.6973 -7.5401 1.9900 39 1 -0.7473 -8.0876 1.1009 40 1 -1.5312 -7.9119 3.2943 41 1 -2.8965 -9.9327 3.5787 42 1 -4.8704 -10.3123 2.2104 43 1 -6.9527 -7.9331 -1.1806 44 1 -5.6008 -5.8940 -1.4864 45 1 -0.3525 -3.9164 1.3537 46 1 0.9524 -4.8254 2.1559 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317163051.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:29 Heat of formation + Delta-G solvation = 50.861140 kcal Electronic energy + Delta-G solvation = -29323.040781 eV Core-core repulsion = 25406.052603 eV Total energy + Delta-G solvation = -3916.988178 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.77353 -40.03216 -37.83589 -37.25270 -34.98096 -34.83868 -32.91556 -31.65178 -31.17898 -31.07820 -29.59398 -26.10065 -25.56284 -25.36685 -24.46523 -23.14951 -23.05554 -21.34583 -20.23398 -19.39593 -19.06838 -18.17685 -17.19069 -17.02982 -16.60896 -15.91742 -15.44446 -15.29513 -15.00697 -14.71204 -14.62513 -14.36791 -14.31864 -13.90664 -13.52340 -13.43329 -12.94881 -12.83873 -12.62880 -12.52619 -12.25281 -12.23019 -12.12208 -11.92931 -11.83758 -11.42503 -11.06443 -10.98022 -10.78269 -10.60692 -10.37052 -10.24822 -9.98995 -9.84549 -9.55758 -9.32550 -9.25229 -8.85197 -8.79870 -8.44598 -6.83538 -5.65851 -2.95909 -0.24933 0.22603 1.47431 2.35700 2.78926 3.09775 3.49701 3.53440 3.55367 3.68913 3.71879 3.84720 3.95338 4.35186 4.39810 4.60438 4.64356 4.71203 4.77337 4.89128 4.91523 4.93141 5.03510 5.23510 5.29960 5.34550 5.43791 5.46996 5.60382 5.66654 5.67652 5.80542 5.82003 5.84056 5.88449 6.00433 6.13410 6.17496 6.23927 6.25209 6.43737 6.59143 6.69306 6.82121 6.93487 6.98382 7.44919 7.52552 7.76958 8.30767 8.51559 9.62344 10.20852 10.55142 11.56200 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014655 B = 0.002865 C = 0.002584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1910.194315 B = 9771.347404 C =10833.376599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.013 4.013 3 Si 0.906 3.094 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.243 4.243 8 H 0.069 0.931 9 N -0.733 5.733 10 C 0.161 3.839 11 C -0.107 4.107 12 H 0.074 0.926 13 C -0.111 4.111 14 C -0.133 4.133 15 C 0.104 3.896 16 N -0.606 5.606 17 C 0.560 3.440 18 O -0.501 6.501 19 C -0.080 4.080 20 C -0.070 4.070 21 C -0.103 4.103 22 C -0.068 4.068 23 C 0.074 3.926 24 N -0.426 5.426 25 C 0.078 3.922 26 C 0.081 3.919 27 N -0.404 5.404 28 C 0.108 3.892 29 C 0.122 3.878 30 H 0.256 0.744 31 H 0.386 0.614 32 H 0.019 0.981 33 H 0.021 0.979 34 H 0.066 0.934 35 H 0.064 0.936 36 H 0.065 0.935 37 H 0.072 0.928 38 H 0.070 0.930 39 H 0.079 0.921 40 H 0.143 0.857 41 H 0.143 0.857 42 H 0.143 0.857 43 H 0.177 0.823 44 H 0.178 0.822 45 H 0.104 0.896 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.633 -26.183 2.736 27.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.209 4.209 3 Si 0.737 3.263 4 H -0.214 1.214 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.374 4.374 8 H 0.087 0.913 9 N -0.378 5.378 10 C 0.033 3.967 11 C -0.127 4.127 12 H 0.093 0.907 13 C -0.150 4.150 14 C -0.171 4.171 15 C -0.020 4.020 16 N -0.340 5.340 17 C 0.346 3.654 18 O -0.374 6.374 19 C -0.085 4.085 20 C -0.090 4.090 21 C -0.122 4.122 22 C -0.088 4.088 23 C -0.050 4.050 24 N -0.140 5.140 25 C -0.098 4.098 26 C -0.094 4.094 27 N -0.117 5.117 28 C -0.017 4.017 29 C 0.001 3.999 30 H 0.066 0.934 31 H 0.220 0.780 32 H 0.037 0.963 33 H 0.039 0.961 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.090 0.910 38 H 0.088 0.912 39 H 0.097 0.903 40 H 0.161 0.839 41 H 0.161 0.839 42 H 0.161 0.839 43 H 0.194 0.806 44 H 0.195 0.805 45 H 0.123 0.877 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -7.646 -25.491 2.943 26.775 hybrid contribution 0.081 0.947 -0.155 0.963 sum -7.565 -24.544 2.789 25.835 Atomic orbital electron populations 1.69672 1.05028 1.25710 1.57257 1.24761 0.95486 0.97641 1.03023 0.86289 0.78493 0.83747 0.77744 1.21359 1.21721 1.21323 1.19152 0.90905 0.84209 1.43140 0.91320 1.42422 1.05989 0.99911 1.89466 1.20623 0.92932 0.85196 0.97932 1.21681 0.97948 0.95076 0.97954 0.90746 1.21518 0.97400 0.93747 1.02294 1.21976 0.98572 0.99123 0.97429 1.21927 0.97331 0.84662 0.98032 1.48079 1.06543 1.08172 1.71226 1.17895 0.81625 0.88251 0.77607 1.90892 1.71432 1.26715 1.48388 1.19903 0.95102 0.95947 0.97546 1.21513 0.99403 0.91974 0.96115 1.20920 0.94491 0.97440 0.99396 1.20937 0.96505 0.98230 0.93100 1.19506 0.93220 0.94804 0.97514 1.68700 1.12821 1.28902 1.03614 1.24112 0.99828 0.90812 0.95047 1.24250 0.90822 0.97056 0.97288 1.68823 1.13904 1.26679 1.02299 1.19273 0.95207 0.91837 0.95369 1.21746 0.93123 0.87819 0.97206 0.93447 0.78010 0.96280 0.96129 0.91527 0.91716 0.91628 0.90953 0.91155 0.90258 0.83950 0.83931 0.83944 0.80591 0.80488 0.87744 0.91458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.44 13.06 55.49 0.72 -28.72 16 2 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 3 Si 0.91 23.12 29.55 -169.99 -5.02 18.10 16 4 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 5 H -0.29 -7.49 7.11 56.52 0.40 -7.08 16 6 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 7 C -0.24 -7.03 9.99 -15.06 -0.15 -7.18 16 8 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 9 N -0.73 -19.36 5.38 -59.91 -0.32 -19.68 16 10 C 0.16 3.31 5.66 -4.04 -0.02 3.29 16 11 C -0.11 -1.81 2.37 -90.50 -0.21 -2.02 16 12 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 13 C -0.11 -1.39 5.17 -26.69 -0.14 -1.53 16 14 C -0.13 -1.40 6.10 -26.38 -0.16 -1.56 16 15 C 0.10 1.08 5.58 -3.48 -0.02 1.06 16 16 N -0.61 -8.98 2.97 -173.74 -0.52 -9.49 16 17 C 0.56 9.51 6.84 -12.48 -0.09 9.43 16 18 O -0.50 -11.04 16.18 5.28 0.09 -10.95 16 19 C -0.08 -1.08 4.64 -104.63 -0.49 -1.57 16 20 C -0.07 -0.64 7.74 -39.14 -0.30 -0.94 16 21 C -0.10 -0.72 9.93 -40.03 -0.40 -1.11 16 22 C -0.07 -0.58 9.97 -39.38 -0.39 -0.97 16 23 C 0.07 0.86 6.59 -84.82 -0.56 0.30 16 24 N -0.43 -4.67 10.46 -10.82 -0.11 -4.78 16 25 C 0.08 0.68 11.21 -17.24 -0.19 0.49 16 26 C 0.08 0.87 11.22 -17.19 -0.19 0.68 16 27 N -0.40 -6.13 9.67 -10.59 -0.10 -6.24 16 28 C 0.11 1.52 6.59 -84.53 -0.56 0.97 16 29 C 0.12 2.12 5.52 -3.71 -0.02 2.10 16 30 H 0.26 7.86 8.31 -40.82 -0.34 7.52 16 31 H 0.39 10.96 6.89 -40.82 -0.28 10.68 16 32 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.08 0.73 5.37 -51.93 -0.28 0.45 16 40 H 0.14 1.01 7.72 -52.49 -0.41 0.61 16 41 H 0.14 0.49 8.06 -52.49 -0.42 0.07 16 42 H 0.14 0.89 8.06 -52.49 -0.42 0.47 16 43 H 0.18 0.79 8.06 -52.49 -0.42 0.37 16 44 H 0.18 1.32 8.06 -52.49 -0.42 0.90 16 45 H 0.10 2.28 6.20 -51.93 -0.32 1.96 16 46 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 377.01 15.07 5.68 5.68 Total: -1.00 -38.30 377.01 -9.90 -48.20 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: -6.33 Total: 6.94 kcal Atomic # 6 Polarization: 4.94 SS G_CDS: -3.99 Total: 0.95 kcal Atomic # 7 Polarization: -68.59 SS G_CDS: -0.33 Total: -68.92 kcal Atomic # 8 Polarization: -11.04 SS G_CDS: 0.09 Total: -10.95 kcal Atomic # 14 Polarization: 23.12 SS G_CDS: -5.02 Total: 18.10 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -38.30 -9.90 -48.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317163051.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.062 kcal (2) G-P(sol) polarization free energy of solvation -38.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.201 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds