Wall clock time and date at job start Sat Apr 11 2020 06:04:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86794 * 120.00116 * 2 1 4 4 H 1.48508 * 109.46991 * 240.00125 * 3 2 1 5 5 H 1.48506 * 109.47508 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47596 * 119.99833 * 3 2 1 7 7 C 1.38813 * 119.99915 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00168 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99939 * 0.02562 * 7 2 1 10 10 C 1.46504 * 119.99850 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.46718 * 180.02562 * 10 9 7 12 12 H 1.08995 * 109.49836 * 55.06264 * 11 10 9 13 13 C 1.53037 * 109.52098 * 175.14452 * 11 10 9 14 14 C 1.53042 * 109.53891 * 181.33044 * 13 11 10 15 15 C 1.53626 * 109.24133 * 298.50991 * 14 13 11 16 16 N 1.46933 * 108.54250 * 54.85479 * 15 14 13 17 17 C 1.34771 * 120.62743 * 126.36626 * 16 15 14 18 18 O 1.21593 * 119.99803 * 185.51585 * 17 16 15 19 19 C 1.47510 * 120.00378 * 5.51562 * 17 16 15 20 20 C 1.38671 * 120.33969 * 53.88534 * 19 17 16 21 21 C 1.38984 * 120.63199 * 180.02562 * 20 19 17 22 22 C 1.36221 * 121.14360 * 359.95287 * 21 20 19 23 23 C 1.40691 * 120.17036 * 0.02917 * 22 21 20 24 24 N 1.33757 * 120.98125 * 179.97438 * 23 22 21 25 25 C 1.31335 * 119.72864 * 179.97438 * 24 23 22 26 26 C 1.39646 * 120.68769 * 359.97438 * 25 24 23 27 27 N 1.31446 * 120.63671 * 0.04659 * 26 25 24 28 28 C 1.33487 * 119.72477 * 359.97185 * 27 26 25 29 29 C 1.46925 * 118.73587 * 306.09761 * 16 15 14 30 30 H 0.97004 * 120.00173 * 359.97438 * 1 2 3 31 31 H 0.97007 * 119.99879 * 359.97438 * 9 7 2 32 32 H 1.08991 * 109.46952 * 60.00232 * 10 9 7 33 33 H 1.08995 * 109.46811 * 299.99567 * 10 9 7 34 34 H 1.08994 * 109.46253 * 301.35090 * 13 11 10 35 35 H 1.09007 * 109.46125 * 61.32468 * 13 11 10 36 36 H 1.09000 * 109.49613 * 58.58427 * 14 13 11 37 37 H 1.08999 * 109.49670 * 178.65257 * 14 13 11 38 38 H 1.08997 * 109.74104 * 295.11729 * 15 14 13 39 39 H 1.09000 * 109.66570 * 174.54871 * 15 14 13 40 40 H 1.07994 * 119.68101 * 359.97438 * 20 19 17 41 41 H 1.08002 * 119.42742 * 179.97438 * 21 20 19 42 42 H 1.08001 * 119.91455 * 180.02562 * 22 21 20 43 43 H 1.07998 * 119.65721 * 180.02562 * 25 24 23 44 44 H 1.07998 * 119.68183 * 180.02562 * 26 25 24 45 45 H 1.09002 * 109.58230 * 173.64652 * 29 16 15 46 46 H 1.09001 * 109.58368 * 293.92191 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6963 -1.2126 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 1.0637 -4.8197 -0.0001 12 1 0.3804 -4.7136 -0.8426 13 6 1.8237 -6.1424 -0.1222 14 6 0.8277 -7.3038 -0.1563 15 6 0.0293 -7.3247 1.1561 16 7 -0.5887 -6.0056 1.3481 17 6 -1.9146 -5.8932 1.5621 18 8 -2.4300 -4.7934 1.6195 19 6 -2.7405 -7.1042 1.7266 20 6 -2.4035 -8.0584 2.6747 21 6 -3.1771 -9.2020 2.8345 22 6 -4.2833 -9.4169 2.0692 23 6 -4.6630 -8.4753 1.0951 24 7 -5.7458 -8.6702 0.3344 25 6 -6.0779 -7.7749 -0.5673 26 6 -5.3125 -6.6198 -0.7404 27 7 -4.2443 -6.4075 -0.0044 28 6 -3.8872 -7.3040 0.9180 29 6 0.2672 -4.8120 1.3084 30 1 -0.4850 0.8401 0.0004 31 1 0.3554 -2.3880 0.0005 32 1 2.6846 -3.7145 0.8905 33 1 2.6846 -3.7145 -0.8895 34 1 2.4108 -6.1404 -1.0405 35 1 2.4887 -6.2595 0.7336 36 1 0.1465 -7.1743 -0.9973 37 1 1.3685 -8.2437 -0.2673 38 1 0.6973 -7.5401 1.9900 39 1 -0.7473 -8.0876 1.1009 40 1 -1.5312 -7.9119 3.2943 41 1 -2.8965 -9.9327 3.5787 42 1 -4.8704 -10.3123 2.2104 43 1 -6.9527 -7.9331 -1.1806 44 1 -5.6008 -5.8940 -1.4864 45 1 -0.3525 -3.9164 1.3537 46 1 0.9524 -4.8254 2.1559 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317163051.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:28 Heat of formation + Delta-G solvation = 22.477057 kcal Electronic energy + Delta-G solvation = -29324.271607 eV Core-core repulsion = 25406.052603 eV Total energy + Delta-G solvation = -3918.219004 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 2.33 seconds Orbital eigenvalues (eV) -42.59382 -41.18695 -38.94523 -38.25359 -36.60838 -35.80951 -34.50119 -33.11479 -32.10392 -31.91482 -31.19868 -27.40843 -26.95037 -26.30829 -25.26285 -24.85888 -24.07121 -22.69277 -21.51626 -20.37940 -19.90900 -19.20401 -18.99406 -18.03461 -17.76279 -17.03846 -16.71909 -16.34106 -16.11358 -15.94297 -15.74679 -15.44104 -15.41693 -15.15754 -15.03102 -14.76722 -14.23356 -14.13465 -14.02406 -13.77890 -13.19695 -13.08820 -13.03505 -12.85522 -12.84586 -12.77765 -12.69247 -12.59738 -12.22895 -12.10186 -11.94861 -11.85943 -11.60371 -11.35237 -11.08617 -10.95651 -10.12163 -10.05030 -9.75029 -9.58400 -9.02831 -7.94832 -5.26270 -1.01483 -0.51736 0.62372 1.43568 1.48596 1.53294 1.54872 1.73438 1.99340 2.54661 2.90862 3.02377 3.10975 3.13208 3.37406 3.47848 3.68578 3.75473 3.85818 3.87169 3.92262 4.04334 4.09163 4.16702 4.24903 4.27993 4.34760 4.41710 4.54288 4.56753 4.74334 4.77251 4.80007 4.86000 4.88361 4.98671 5.01791 5.08093 5.12980 5.18225 5.20380 5.32252 5.44591 5.47925 5.50655 5.60193 6.20172 6.24649 6.34471 6.68551 7.09129 7.29786 8.06481 8.28926 9.28457 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014655 B = 0.002865 C = 0.002584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1910.194315 B = 9771.347404 C =10833.376599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.082 4.082 3 Si 0.980 3.020 4 H -0.274 1.274 5 H -0.298 1.298 6 H -0.274 1.274 7 C -0.247 4.247 8 H 0.081 0.919 9 N -0.750 5.750 10 C 0.159 3.841 11 C -0.095 4.095 12 H 0.040 0.960 13 C -0.104 4.104 14 C -0.127 4.127 15 C 0.098 3.902 16 N -0.602 5.602 17 C 0.556 3.444 18 O -0.575 6.575 19 C -0.121 4.121 20 C -0.045 4.045 21 C -0.087 4.087 22 C -0.062 4.062 23 C 0.056 3.944 24 N -0.436 5.436 25 C 0.085 3.915 26 C 0.075 3.925 27 N -0.468 5.468 28 C 0.081 3.919 29 C 0.130 3.870 30 H 0.250 0.750 31 H 0.369 0.631 32 H 0.032 0.968 33 H 0.026 0.974 34 H 0.074 0.926 35 H 0.088 0.912 36 H 0.043 0.957 37 H 0.114 0.886 38 H 0.106 0.894 39 H 0.096 0.904 40 H 0.167 0.833 41 H 0.193 0.807 42 H 0.171 0.829 43 H 0.221 0.779 44 H 0.198 0.802 45 H 0.046 0.954 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.124 -30.336 3.827 31.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.624 5.624 2 C -0.274 4.274 3 Si 0.808 3.192 4 H -0.200 1.200 5 H -0.224 1.224 6 H -0.200 1.200 7 C -0.379 4.379 8 H 0.099 0.901 9 N -0.392 5.392 10 C 0.033 3.967 11 C -0.114 4.114 12 H 0.059 0.941 13 C -0.141 4.141 14 C -0.165 4.165 15 C -0.023 4.023 16 N -0.334 5.334 17 C 0.344 3.656 18 O -0.454 6.454 19 C -0.126 4.126 20 C -0.065 4.065 21 C -0.106 4.106 22 C -0.081 4.081 23 C -0.067 4.067 24 N -0.150 5.150 25 C -0.090 4.090 26 C -0.100 4.100 27 N -0.182 5.182 28 C -0.043 4.043 29 C 0.007 3.993 30 H 0.058 0.942 31 H 0.200 0.800 32 H 0.050 0.950 33 H 0.044 0.956 34 H 0.093 0.907 35 H 0.106 0.894 36 H 0.062 0.938 37 H 0.133 0.867 38 H 0.124 0.876 39 H 0.115 0.885 40 H 0.185 0.815 41 H 0.210 0.790 42 H 0.188 0.812 43 H 0.238 0.762 44 H 0.215 0.785 45 H 0.065 0.935 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -6.055 -29.739 4.033 30.616 hybrid contribution -0.408 2.129 -0.514 2.228 sum -6.464 -27.609 3.519 28.573 Atomic orbital electron populations 1.69889 1.07007 1.26094 1.59416 1.25719 0.96350 1.01627 1.03682 0.85121 0.77053 0.78617 0.78410 1.20020 1.22405 1.19978 1.19661 0.91618 0.85268 1.41355 0.90075 1.42709 1.05498 1.01589 1.89453 1.20841 0.93488 0.84094 0.98316 1.21536 0.96933 0.96640 0.96334 0.94118 1.21502 0.97609 0.91303 1.03736 1.21979 0.97916 1.00015 0.96620 1.22332 0.98236 0.82401 0.99321 1.48164 1.05978 1.09100 1.70132 1.18594 0.82214 0.88681 0.76095 1.90835 1.72867 1.29798 1.51870 1.19729 0.95834 0.96158 1.00841 1.21904 0.99800 0.91070 0.93773 1.21407 0.92929 0.96975 0.99293 1.21388 0.96930 0.98093 0.91674 1.19888 0.93334 0.94794 0.98696 1.68793 1.12685 1.29366 1.04137 1.24722 1.00271 0.89410 0.94590 1.24763 0.90047 0.98273 0.96896 1.68753 1.16383 1.28742 1.04368 1.19544 0.96091 0.92836 0.95863 1.21416 0.92648 0.87245 0.97992 0.94171 0.79967 0.94975 0.95583 0.90726 0.89392 0.93834 0.86730 0.87597 0.88549 0.81521 0.78962 0.81151 0.76240 0.78546 0.93543 0.89955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -65.00 13.06 21.65 0.28 -64.72 16 2 C -0.08 -5.04 5.50 84.86 0.47 -4.57 16 3 Si 0.98 48.69 29.55 68.60 2.03 50.71 16 4 H -0.27 -12.95 7.11 99.48 0.71 -12.24 16 5 H -0.30 -14.97 7.11 99.48 0.71 -14.26 16 6 H -0.27 -12.93 7.11 99.48 0.71 -12.22 16 7 C -0.25 -14.69 9.99 84.03 0.84 -13.85 16 8 H 0.08 4.51 7.83 -2.91 -0.02 4.49 16 9 N -0.75 -41.61 5.38 -343.45 -1.85 -43.46 16 10 C 0.16 6.66 5.66 86.38 0.49 7.15 16 11 C -0.09 -3.31 2.37 -10.72 -0.03 -3.34 16 12 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 13 C -0.10 -2.37 5.17 30.62 0.16 -2.22 16 14 C -0.13 -2.35 6.10 30.82 0.19 -2.16 16 15 C 0.10 1.80 5.58 86.51 0.48 2.28 16 16 N -0.60 -18.37 2.97 -821.84 -2.44 -20.81 16 17 C 0.56 20.32 6.84 86.69 0.59 20.91 16 18 O -0.57 -28.42 16.18 -4.01 -0.06 -28.48 16 19 C -0.12 -3.34 4.64 -19.87 -0.09 -3.43 16 20 C -0.05 -0.71 7.74 22.55 0.17 -0.54 16 21 C -0.09 -0.82 9.93 21.98 0.22 -0.61 16 22 C -0.06 -0.84 9.97 22.40 0.22 -0.62 16 23 C 0.06 1.27 6.59 40.28 0.27 1.53 16 24 N -0.44 -9.04 10.46 -188.15 -1.97 -11.01 16 25 C 0.09 1.45 11.21 85.11 0.95 2.41 16 26 C 0.08 1.71 11.22 85.09 0.95 2.67 16 27 N -0.47 -15.51 9.67 -187.42 -1.81 -17.32 16 28 C 0.08 2.38 6.59 40.59 0.27 2.65 16 29 C 0.13 4.77 5.52 86.36 0.48 5.25 16 30 H 0.25 16.17 8.31 -92.71 -0.77 15.40 16 31 H 0.37 22.73 6.89 -92.70 -0.64 22.09 16 32 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.09 1.67 8.14 -2.38 -0.02 1.65 16 36 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.10 1.50 5.37 -2.39 -0.01 1.48 16 40 H 0.17 1.72 7.72 -2.91 -0.02 1.70 16 41 H 0.19 -0.01 8.06 -2.91 -0.02 -0.04 16 42 H 0.17 1.35 8.06 -2.91 -0.02 1.33 16 43 H 0.22 1.49 8.06 -2.91 -0.02 1.46 16 44 H 0.20 3.22 8.06 -2.91 -0.02 3.19 16 45 H 0.05 2.27 6.20 -2.39 -0.01 2.25 16 46 H 0.08 2.71 8.14 -2.39 -0.02 2.69 16 Total: -1.00 -94.70 377.01 1.18 -93.51 By element: Atomic # 1 Polarization: 27.68 SS G_CDS: 0.37 Total: 28.05 kcal Atomic # 6 Polarization: 6.89 SS G_CDS: 6.63 Total: 13.52 kcal Atomic # 7 Polarization: -149.54 SS G_CDS: -7.78 Total: -157.32 kcal Atomic # 8 Polarization: -28.42 SS G_CDS: -0.06 Total: -28.48 kcal Atomic # 14 Polarization: 48.69 SS G_CDS: 2.03 Total: 50.71 kcal Total: -94.70 1.18 -93.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317163051.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.992 kcal (2) G-P(sol) polarization free energy of solvation -94.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.514 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.33 seconds