Wall clock time and date at job start Sat Apr 11 2020 06:04:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86792 * 119.99811 * 2 1 4 4 H 1.48503 * 109.47056 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47635 * 299.99861 * 3 2 1 6 6 H 1.48494 * 109.47325 * 60.00314 * 3 2 1 7 7 C 1.38813 * 119.99629 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99550 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00503 * 359.97438 * 7 2 1 10 10 C 1.46501 * 120.00156 * 180.02562 * 9 7 2 11 11 C 1.52994 * 109.46995 * 180.02562 * 10 9 7 12 12 H 1.09002 * 110.92053 * 51.09556 * 11 10 9 13 13 C 1.55158 * 111.00517 * 175.00296 * 11 10 9 14 14 C 1.54315 * 102.94569 * 153.57734 * 13 11 10 15 15 N 1.47026 * 107.27422 * 337.80404 * 14 13 11 16 16 C 1.34774 * 125.65319 * 178.90550 * 15 14 13 17 17 O 1.21588 * 120.00004 * 185.80199 * 16 15 14 18 18 C 1.47577 * 119.99845 * 5.80265 * 16 15 14 19 19 C 1.39816 * 120.00407 * 172.83540 * 18 16 15 20 20 C 1.36585 * 119.99610 * 180.02562 * 19 18 16 21 21 C 1.39777 * 120.00350 * 359.97438 * 20 19 18 22 22 C 1.47657 * 119.99616 * 180.02562 * 21 20 19 23 23 C 1.36243 * 126.77564 * 0.02562 * 22 21 20 24 24 N 1.33685 * 107.85789 * 180.02562 * 23 22 21 25 25 C 1.30651 * 109.57931 * 0.02562 * 24 23 22 26 26 N 1.34956 * 109.03029 * 359.73027 * 25 24 23 27 27 H 0.96996 * 126.46167 * 180.26428 * 26 25 24 28 28 C 1.39777 * 120.00959 * 0.29201 * 21 20 19 29 29 C 1.36586 * 120.00249 * 359.44694 * 28 21 20 30 30 C 1.47431 * 108.69791 * 359.17025 * 15 14 13 31 31 H 0.96997 * 119.99815 * 359.97438 * 1 2 3 32 32 H 0.97001 * 119.99346 * 359.97438 * 9 7 2 33 33 H 1.09002 * 109.47048 * 59.99928 * 10 9 7 34 34 H 1.08995 * 109.47120 * 300.00253 * 10 9 7 35 35 H 1.08998 * 110.72044 * 35.20571 * 13 11 10 36 36 H 1.09009 * 110.86814 * 272.01037 * 13 11 10 37 37 H 1.09004 * 109.88447 * 218.39014 * 14 13 11 38 38 H 1.08998 * 110.01461 * 97.29569 * 14 13 11 39 39 H 1.08003 * 120.00027 * 0.04506 * 19 18 16 40 40 H 1.07996 * 119.99563 * 180.02562 * 20 19 18 41 41 H 1.08001 * 126.07134 * 359.97438 * 23 22 21 42 42 H 1.08002 * 125.48784 * 179.97438 * 25 24 23 43 43 H 1.08007 * 120.00088 * 179.70526 * 28 21 20 44 44 H 1.08004 * 119.99850 * 180.27881 * 29 28 21 45 45 H 1.08999 * 110.36356 * 142.74192 * 30 15 14 46 46 H 1.08996 * 110.36370 * 265.06031 * 30 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 6 1.0638 -4.8197 -0.0012 12 1 0.3252 -4.6998 -0.7938 13 6 1.7992 -6.1801 -0.1274 14 6 0.8245 -7.1644 0.5527 15 7 -0.0337 -6.3782 1.4511 16 6 -1.0314 -6.8688 2.2128 17 8 -1.7464 -6.1112 2.8399 18 6 -1.2561 -8.3255 2.2859 19 6 -2.1898 -8.8446 3.1879 20 6 -2.3973 -10.1929 3.2557 21 6 -1.6766 -11.0537 2.4230 22 6 -1.9014 -12.5113 2.4960 23 6 -2.7715 -13.1622 3.3179 24 7 -2.6674 -14.4718 3.0705 25 6 -1.7761 -14.6714 2.1363 26 7 -1.2761 -13.4810 1.7436 27 1 -0.6018 -13.3357 1.0617 28 6 -0.7391 -10.5355 1.5251 29 6 -0.5353 -9.1868 1.4532 30 6 0.3739 -4.9634 1.3759 31 1 -0.4850 0.8400 0.0004 32 1 0.3556 -2.3880 0.0002 33 1 2.6847 -3.7146 0.8895 34 1 2.6847 -3.7146 -0.8905 35 1 2.7521 -6.1539 0.4011 36 1 1.9476 -6.4457 -1.1742 37 1 1.3839 -7.9030 1.1268 38 1 0.2142 -7.6644 -0.1994 39 1 -2.7472 -8.1794 3.8308 40 1 -3.1187 -10.5938 3.9522 41 1 -3.4281 -12.7020 4.0414 42 1 -1.4888 -15.6338 1.7391 43 1 -0.1790 -11.2011 0.8850 44 1 0.1859 -8.7861 0.7562 45 1 -0.4993 -4.3136 1.4329 46 1 1.0759 -4.7279 2.1758 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317338759.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:45 Heat of formation + Delta-G solvation = 62.711208 kcal Electronic energy + Delta-G solvation = -27793.534448 eV Core-core repulsion = 23877.060127 eV Total energy + Delta-G solvation = -3916.474320 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 2.17 seconds Orbital eigenvalues (eV) -42.98386 -41.66726 -39.70473 -38.73167 -36.53001 -34.34218 -33.80400 -33.09500 -32.15789 -31.95802 -30.25613 -29.34342 -27.19131 -25.83770 -24.43232 -24.06925 -23.29404 -22.25831 -21.59026 -21.43500 -21.00545 -19.43491 -19.18076 -18.40505 -17.53573 -16.96515 -16.61483 -16.49902 -16.02357 -15.94089 -15.84901 -15.31308 -15.15767 -15.06575 -14.85242 -14.71479 -14.66452 -14.36697 -14.16013 -13.98098 -13.65932 -13.49149 -13.28414 -13.09643 -12.82497 -12.75502 -12.28721 -12.12039 -11.96171 -11.77570 -11.62230 -11.41872 -11.17956 -11.16458 -10.98695 -10.93332 -10.62132 -10.14883 -9.76736 -9.00386 -8.87321 -7.95504 -5.24767 -0.56778 0.38070 1.06368 1.46729 1.48047 1.58023 1.82664 1.85775 2.12308 2.19010 2.55651 2.86981 3.29781 3.39133 3.52065 3.57927 3.66180 3.79137 3.86949 3.88048 3.99877 4.18504 4.21059 4.25249 4.30242 4.39536 4.47800 4.50457 4.54026 4.61965 4.71233 4.79331 4.83398 4.89944 4.97379 5.01978 5.05247 5.15308 5.20790 5.24425 5.36192 5.41848 5.44974 5.50598 5.64288 5.77469 6.26430 6.42112 6.49701 7.00178 7.04543 7.32344 8.09252 8.30023 9.28455 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.034277 B = 0.001785 C = 0.001712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.674379 B =15683.726274 C =16353.325205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.080 4.080 3 Si 0.975 3.025 4 H -0.262 1.262 5 H -0.293 1.293 6 H -0.297 1.297 7 C -0.242 4.242 8 H 0.081 0.919 9 N -0.749 5.749 10 C 0.163 3.837 11 C -0.097 4.097 12 H 0.075 0.925 13 C -0.114 4.114 14 C 0.083 3.917 15 N -0.611 5.611 16 C 0.558 3.442 17 O -0.593 6.593 18 C -0.150 4.150 19 C -0.065 4.065 20 C -0.114 4.114 21 C 0.016 3.984 22 C -0.004 4.004 23 C -0.012 4.012 24 N -0.540 5.540 25 C 0.210 3.790 26 N -0.551 5.551 27 H 0.438 0.562 28 C -0.122 4.122 29 C -0.106 4.106 30 C 0.117 3.883 31 H 0.250 0.750 32 H 0.371 0.629 33 H 0.025 0.975 34 H 0.038 0.962 35 H 0.093 0.907 36 H 0.115 0.885 37 H 0.109 0.891 38 H 0.104 0.896 39 H 0.124 0.876 40 H 0.150 0.850 41 H 0.179 0.821 42 H 0.251 0.749 43 H 0.160 0.840 44 H 0.187 0.813 45 H 0.040 0.960 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.736 -34.615 -0.433 34.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.624 5.624 2 C -0.272 4.272 3 Si 0.804 3.196 4 H -0.186 1.186 5 H -0.221 1.221 6 H -0.224 1.224 7 C -0.374 4.374 8 H 0.099 0.901 9 N -0.392 5.392 10 C 0.037 3.963 11 C -0.117 4.117 12 H 0.094 0.906 13 C -0.152 4.152 14 C -0.037 4.037 15 N -0.343 5.343 16 C 0.350 3.650 17 O -0.475 6.475 18 C -0.153 4.153 19 C -0.085 4.085 20 C -0.133 4.133 21 C 0.014 3.986 22 C -0.119 4.119 23 C -0.161 4.161 24 N -0.259 5.259 25 C -0.073 4.073 26 N -0.155 5.155 27 H 0.280 0.720 28 C -0.141 4.141 29 C -0.124 4.124 30 C -0.006 4.006 31 H 0.058 0.942 32 H 0.202 0.798 33 H 0.043 0.957 34 H 0.056 0.944 35 H 0.112 0.888 36 H 0.133 0.867 37 H 0.127 0.873 38 H 0.121 0.879 39 H 0.142 0.858 40 H 0.168 0.832 41 H 0.196 0.804 42 H 0.267 0.733 43 H 0.177 0.823 44 H 0.204 0.796 45 H 0.059 0.941 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.048 -34.807 0.331 34.868 hybrid contribution 0.112 2.436 -0.236 2.450 sum 2.160 -32.371 0.095 32.443 Atomic orbital electron populations 1.69847 1.06825 1.25945 1.59760 1.25626 0.96356 1.01368 1.03875 0.85046 0.78394 0.79669 0.76495 1.18571 1.22050 1.22449 1.19720 0.91674 0.85286 1.40748 0.90107 1.42661 1.05600 1.01502 1.89425 1.20784 0.93325 0.83667 0.98566 1.22375 0.97882 0.96269 0.95168 0.90613 1.22767 0.98189 0.90622 1.03597 1.22940 0.92707 0.94982 0.93063 1.48489 1.33103 1.09456 1.43212 1.18580 0.78947 0.89092 0.78376 1.90776 1.47938 1.61249 1.47544 1.19873 1.02253 0.90967 1.02240 1.20964 0.95288 0.95825 0.96378 1.20928 1.00626 0.91679 1.00023 1.18275 0.95839 0.88653 0.95848 1.19572 1.02479 0.89016 1.00829 1.22764 1.01521 0.89656 1.02191 1.70187 1.20163 1.18071 1.17502 1.25875 0.94210 0.91765 0.95489 1.43288 1.33952 1.06391 1.31902 0.71995 1.21155 0.98379 0.95411 0.99120 1.22648 0.98463 0.93444 0.97806 1.22099 0.98288 0.81708 0.98456 0.94150 0.79771 0.95663 0.94377 0.88798 0.86652 0.87304 0.87851 0.85786 0.83219 0.80411 0.73337 0.82274 0.79644 0.94091 0.91941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.34 13.06 21.65 0.28 -61.06 16 2 C -0.08 -4.69 5.50 84.86 0.47 -4.23 16 3 Si 0.97 46.71 29.55 68.60 2.03 48.74 16 4 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 5 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 6 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 7 C -0.24 -13.55 9.99 84.03 0.84 -12.71 16 8 H 0.08 4.27 7.83 -2.91 -0.02 4.24 16 9 N -0.75 -38.00 5.55 -343.47 -1.90 -39.90 16 10 C 0.16 6.02 5.72 86.38 0.49 6.51 16 11 C -0.10 -2.82 3.03 -9.48 -0.03 -2.85 16 12 H 0.08 2.37 8.14 -2.39 -0.02 2.36 16 13 C -0.11 -1.87 6.42 31.78 0.20 -1.66 16 14 C 0.08 1.27 4.87 86.73 0.42 1.69 16 15 N -0.61 -16.68 3.33 -832.81 -2.77 -19.45 16 16 C 0.56 17.63 7.80 86.71 0.68 18.31 16 17 O -0.59 -24.86 16.58 -3.99 -0.07 -24.93 16 18 C -0.15 -3.45 5.88 -20.05 -0.12 -3.57 16 19 C -0.07 -1.44 9.53 22.26 0.21 -1.23 16 20 C -0.11 -1.86 9.52 22.26 0.21 -1.65 16 21 C 0.02 0.21 5.88 -20.05 -0.12 0.09 16 22 C 0.00 -0.05 6.96 40.24 0.28 0.23 16 23 C -0.01 -0.18 11.28 83.95 0.95 0.76 16 24 N -0.54 -8.96 11.22 -199.42 -2.24 -11.20 16 25 C 0.21 1.71 13.02 180.25 2.35 4.06 16 26 N -0.55 -3.52 6.06 -187.62 -1.14 -4.66 16 27 H 0.44 -0.41 8.20 -92.71 -0.76 -1.17 16 28 C -0.12 -1.27 9.65 22.26 0.21 -1.05 16 29 C -0.11 -1.50 8.55 22.26 0.19 -1.31 16 30 C 0.12 3.96 6.35 86.78 0.55 4.51 16 31 H 0.25 15.28 8.31 -92.71 -0.77 14.51 16 32 H 0.37 20.55 7.67 -92.71 -0.71 19.84 16 33 H 0.03 0.93 7.97 -2.39 -0.02 0.91 16 34 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.09 1.37 8.04 -2.39 -0.02 1.35 16 36 H 0.12 1.28 8.14 -2.38 -0.02 1.26 16 37 H 0.11 1.04 6.73 -2.38 -0.02 1.03 16 38 H 0.10 1.09 6.72 -2.39 -0.02 1.07 16 39 H 0.12 3.04 7.65 -2.91 -0.02 3.02 16 40 H 0.15 1.85 7.04 -2.91 -0.02 1.83 16 41 H 0.18 2.33 7.30 -2.91 -0.02 2.31 16 42 H 0.25 -0.32 8.06 -2.91 -0.02 -0.34 16 43 H 0.16 0.37 7.27 -2.91 -0.02 0.35 16 44 H 0.19 1.67 2.71 -9.39 -0.03 1.64 16 45 H 0.04 1.73 7.99 -2.39 -0.02 1.71 16 46 H 0.06 2.20 7.90 -2.39 -0.02 2.18 16 Total: -1.00 -86.52 378.42 1.54 -84.98 By element: Atomic # 1 Polarization: 22.02 SS G_CDS: -0.44 Total: 21.58 kcal Atomic # 6 Polarization: -1.89 SS G_CDS: 7.79 Total: 5.90 kcal Atomic # 7 Polarization: -128.50 SS G_CDS: -7.77 Total: -136.27 kcal Atomic # 8 Polarization: -24.86 SS G_CDS: -0.07 Total: -24.93 kcal Atomic # 14 Polarization: 46.71 SS G_CDS: 2.03 Total: 48.74 kcal Total: -86.52 1.54 -84.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317338759.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.691 kcal (2) G-P(sol) polarization free energy of solvation -86.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.980 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.17 seconds