Wall clock time and date at job start Sat Apr 11 2020 06:04:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86796 * 120.00297 * 2 1 4 4 H 1.48491 * 109.47473 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47099 * 300.00549 * 3 2 1 6 6 H 1.48498 * 109.47119 * 59.99624 * 3 2 1 7 7 C 1.38817 * 120.00119 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00292 * 157.93247 * 7 2 1 9 9 N 1.36943 * 119.99408 * 337.93451 * 7 2 1 10 10 C 1.46496 * 120.00274 * 324.92321 * 9 7 2 11 11 C 1.52997 * 109.47499 * 270.00442 * 10 9 7 12 12 N 1.46500 * 109.47135 * 180.02562 * 11 10 9 13 13 C 1.34781 * 119.99786 * 180.02562 * 12 11 10 14 14 O 1.21580 * 120.00014 * 0.02562 * 13 12 11 15 15 C 1.47623 * 119.99547 * 179.97438 * 13 12 11 16 16 C 1.39756 * 120.03309 * 359.72321 * 15 13 12 17 17 C 1.37615 * 119.97417 * 179.78530 * 16 15 13 18 18 C 1.39529 * 120.02575 * 0.46945 * 17 16 15 19 19 C 1.48264 * 119.97238 * 179.76386 * 18 17 16 20 20 C 1.40939 * 126.25103 * 180.02562 * 19 18 17 21 21 N 1.30631 * 108.07786 * 179.97438 * 20 19 18 22 22 N 1.40003 * 108.56109 * 0.02562 * 21 20 19 23 23 H 0.97001 * 125.87424 * 179.97438 * 22 21 20 24 24 C 1.34716 * 108.25785 * 359.73016 * 22 21 20 25 25 C 1.39522 * 120.05661 * 359.78659 * 18 17 16 26 26 C 1.37615 * 120.02916 * 359.97438 * 25 18 17 27 27 C 1.46504 * 119.99489 * 144.93086 * 9 7 2 28 28 C 1.53000 * 117.49921 * 3.23472 * 27 9 7 29 29 C 1.52998 * 117.49703 * 294.57074 * 27 9 7 30 30 H 0.96995 * 119.99672 * 355.90991 * 1 2 3 31 31 H 1.09005 * 109.47045 * 30.00589 * 10 9 7 32 32 H 1.08998 * 109.47092 * 149.99943 * 10 9 7 33 33 H 1.09005 * 109.47091 * 300.00118 * 11 10 9 34 34 H 1.09004 * 109.46959 * 59.99639 * 11 10 9 35 35 H 0.96999 * 120.00006 * 359.97438 * 12 11 10 36 36 H 1.08002 * 120.00954 * 0.02562 * 16 15 13 37 37 H 1.07990 * 119.98507 * 180.23313 * 17 16 15 38 38 H 1.08001 * 125.96384 * 359.96820 * 20 19 18 39 39 H 1.07999 * 126.20126 * 180.28085 * 24 22 21 40 40 H 1.07997 * 119.98710 * 180.02562 * 25 18 17 41 41 H 1.07999 * 120.01875 * 179.97438 * 26 25 18 42 42 H 1.09004 * 115.54877 * 148.90350 * 27 9 7 43 43 H 1.08998 * 117.50153 * 359.97438 * 28 27 9 44 44 H 1.08995 * 117.49708 * 145.02504 * 28 27 9 45 45 H 1.08995 * 117.49988 * 214.98174 * 29 27 9 46 46 H 1.08997 * 117.49880 * 359.97438 * 29 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8915 2.3964 1.2124 7 6 2.0103 -1.2022 -0.0005 8 1 3.0309 -1.2363 -0.3519 9 7 1.4007 -2.3448 0.4445 10 6 0.4457 -2.2813 1.5535 11 6 1.1887 -2.4675 2.8779 12 7 0.2335 -2.4045 3.9868 13 6 0.6645 -2.5434 5.2563 14 8 1.8462 -2.7205 5.4811 15 6 -0.2980 -2.4795 6.3737 16 6 -1.6555 -2.2691 6.1164 17 6 -2.5523 -2.2141 7.1587 18 6 -2.1055 -2.3584 8.4726 19 6 -3.0721 -2.2937 9.5950 20 6 -2.7679 -2.4212 10.9653 21 7 -3.8807 -2.3077 11.6399 22 7 -4.9309 -2.1057 10.7363 23 1 -5.8658 -1.9901 10.9680 24 6 -4.4192 -2.0941 9.4902 25 6 -0.7498 -2.5631 8.7312 26 6 0.1484 -2.6235 7.6903 27 6 1.7039 -3.6309 -0.1884 28 6 2.7655 -3.6431 -1.2902 29 6 1.2873 -3.8149 -1.6490 30 1 -0.4849 0.8379 0.0599 31 1 -0.0520 -1.3115 1.5493 32 1 -0.2968 -3.0711 1.4393 33 1 1.6864 -3.4373 2.8821 34 1 1.9312 -1.6776 2.9921 35 1 -0.7091 -2.2622 3.8075 36 1 -2.0010 -2.1537 5.0997 37 1 -3.6018 -2.0553 6.9599 38 1 -1.7860 -2.5843 11.3845 39 1 -4.9740 -1.9544 8.5741 40 1 -0.4053 -2.6751 9.7486 41 1 1.1978 -2.7815 7.8907 42 1 1.6465 -4.5015 0.4649 43 1 3.2380 -2.6944 -1.5444 44 1 3.4061 -4.5220 -1.3619 45 1 0.9562 -4.8067 -1.9568 46 1 0.7872 -2.9795 -2.1389 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317557632.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:56 Heat of formation + Delta-G solvation = 112.648591 kcal Electronic energy + Delta-G solvation = -27634.641402 eV Core-core repulsion = 23720.332530 eV Total energy + Delta-G solvation = -3914.308873 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 2.35 seconds Orbital eigenvalues (eV) -41.63151 -39.89359 -38.15566 -37.09038 -34.78060 -33.34232 -32.85616 -31.87019 -31.18057 -30.65421 -29.09355 -27.45527 -24.69257 -23.76232 -23.34809 -21.87406 -21.51270 -21.29147 -20.85015 -20.00825 -19.73940 -18.62686 -17.71747 -16.26312 -15.78906 -15.54716 -15.46029 -15.13260 -15.11249 -14.89054 -14.70852 -14.42890 -14.29758 -13.90384 -13.66143 -13.33081 -13.08868 -13.03659 -12.65210 -12.47697 -12.19524 -11.93462 -11.57424 -11.21296 -11.08246 -11.02879 -10.75789 -10.73355 -10.32455 -10.20274 -10.13361 -9.97151 -9.86583 -9.66353 -9.62365 -9.30038 -9.12401 -8.59771 -8.50163 -8.09384 -6.66226 -5.87068 -3.47129 0.55723 1.29249 1.51617 2.34593 2.40904 3.22799 3.31642 3.41459 3.44752 3.55278 3.97498 4.20781 4.36851 4.41560 4.61160 4.78051 4.83296 4.90442 5.03942 5.05795 5.14945 5.22491 5.26704 5.30871 5.55769 5.69504 5.86564 5.88900 5.98855 6.03880 6.10083 6.18414 6.25784 6.27041 6.36247 6.37416 6.48632 6.52259 6.60507 6.74334 6.75070 6.85894 6.97202 7.05764 7.16331 7.19810 7.51174 7.75181 7.91811 8.39333 8.57211 9.06761 9.69499 10.24211 11.09263 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016274 B = 0.002066 C = 0.001996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1720.083336 B =13548.372984 C =14027.484415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.011 3.989 3 Si 0.896 3.104 4 H -0.275 1.275 5 H -0.289 1.289 6 H -0.287 1.287 7 C -0.257 4.257 8 H 0.069 0.931 9 N -0.547 5.547 10 C 0.136 3.864 11 C 0.099 3.901 12 N -0.714 5.714 13 C 0.550 3.450 14 O -0.546 6.546 15 C -0.136 4.136 16 C -0.077 4.077 17 C -0.130 4.130 18 C 0.023 3.977 19 C -0.203 4.203 20 C 0.070 3.930 21 N -0.295 5.295 22 N -0.473 5.473 23 H 0.442 0.558 24 C 0.079 3.921 25 C -0.128 4.128 26 C -0.053 4.053 27 C 0.119 3.881 28 C -0.195 4.195 29 C -0.220 4.220 30 H 0.254 0.746 31 H 0.106 0.894 32 H 0.031 0.969 33 H 0.051 0.949 34 H 0.067 0.933 35 H 0.396 0.604 36 H 0.130 0.870 37 H 0.125 0.875 38 H 0.188 0.812 39 H 0.183 0.817 40 H 0.127 0.873 41 H 0.136 0.864 42 H 0.088 0.912 43 H 0.098 0.902 44 H 0.075 0.925 45 H 0.070 0.930 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.082 -5.436 17.697 21.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.190 4.190 3 Si 0.725 3.275 4 H -0.199 1.199 5 H -0.216 1.216 6 H -0.213 1.213 7 C -0.386 4.386 8 H 0.086 0.914 9 N -0.264 5.264 10 C 0.009 3.991 11 C -0.026 4.026 12 N -0.365 5.365 13 C 0.336 3.664 14 O -0.425 6.425 15 C -0.139 4.139 16 C -0.096 4.096 17 C -0.149 4.149 18 C 0.021 3.979 19 C -0.215 4.215 20 C -0.117 4.117 21 N -0.117 5.117 22 N -0.179 5.179 23 H 0.286 0.714 24 C -0.070 4.070 25 C -0.147 4.147 26 C -0.072 4.072 27 C 0.010 3.990 28 C -0.233 4.233 29 C -0.261 4.261 30 H 0.064 0.936 31 H 0.123 0.877 32 H 0.050 0.950 33 H 0.070 0.930 34 H 0.085 0.915 35 H 0.231 0.769 36 H 0.147 0.853 37 H 0.143 0.857 38 H 0.205 0.795 39 H 0.200 0.800 40 H 0.145 0.855 41 H 0.154 0.846 42 H 0.106 0.894 43 H 0.116 0.884 44 H 0.093 0.907 45 H 0.088 0.912 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -10.872 -5.399 18.935 22.492 hybrid contribution -0.209 1.036 -0.952 1.422 sum -11.081 -4.363 17.983 21.569 Atomic orbital electron populations 1.70040 1.05493 1.25998 1.51094 1.25122 0.95042 0.98819 0.99978 0.86333 0.79972 0.83828 0.77356 1.19929 1.21618 1.21298 1.19145 0.94567 0.85376 1.39529 0.91359 1.43227 1.49190 1.01701 1.32255 1.21107 0.91004 1.03598 0.83431 1.22343 0.92711 1.01143 0.86416 1.46023 1.12137 1.72311 1.06029 1.18244 0.87925 0.77219 0.82987 1.90756 1.17229 1.49824 1.84667 1.20112 0.93695 1.05843 0.94281 1.21263 0.92140 0.96687 0.99493 1.20956 0.99609 1.02881 0.91444 1.18191 0.91993 0.96572 0.91123 1.18985 0.92485 1.16658 0.93332 1.24062 0.97818 0.98229 0.91627 1.77250 0.94827 1.23486 1.16092 1.46233 1.10207 1.57367 1.04121 0.71397 1.22717 0.94726 0.99585 0.89985 1.21010 0.91966 1.02450 0.99235 1.21189 1.00457 0.94713 0.90843 1.21243 1.00624 0.89959 0.87194 1.23044 0.91919 1.01974 1.06400 1.23361 0.97434 1.00680 1.04632 0.93579 0.87651 0.95006 0.93017 0.91456 0.76906 0.85261 0.85707 0.79511 0.80045 0.85462 0.84567 0.89437 0.88402 0.90668 0.91177 0.88975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.95 11.33 55.49 0.63 -23.32 16 2 C 0.01 0.28 4.96 -17.43 -0.09 0.19 16 3 Si 0.90 21.11 29.61 -169.99 -5.03 16.07 16 4 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 7 C -0.26 -6.70 8.63 -15.05 -0.13 -6.83 16 8 H 0.07 1.81 6.55 -52.49 -0.34 1.46 16 9 N -0.55 -12.98 2.78 -165.66 -0.46 -13.44 16 10 C 0.14 2.93 5.45 -4.05 -0.02 2.91 16 11 C 0.10 1.97 6.00 -4.04 -0.02 1.95 16 12 N -0.71 -11.88 5.51 -61.32 -0.34 -12.22 16 13 C 0.55 9.42 7.76 -12.43 -0.10 9.33 16 14 O -0.55 -11.34 16.33 5.30 0.09 -11.25 16 15 C -0.14 -1.84 5.88 -104.93 -0.62 -2.46 16 16 C -0.08 -0.84 9.52 -39.24 -0.37 -1.21 16 17 C -0.13 -1.19 9.55 -39.33 -0.38 -1.56 16 18 C 0.02 0.21 5.88 -104.81 -0.62 -0.40 16 19 C -0.20 -1.69 6.04 -105.35 -0.64 -2.32 16 20 C 0.07 0.58 11.42 -17.04 -0.19 0.39 16 21 N -0.30 -2.67 12.66 30.82 0.39 -2.28 16 22 N -0.47 -2.94 7.32 30.65 0.22 -2.72 16 23 H 0.44 1.29 8.96 -182.67 -1.64 -0.35 16 24 C 0.08 0.48 11.38 -16.88 -0.19 0.29 16 25 C -0.13 -1.26 9.56 -39.33 -0.38 -1.64 16 26 C -0.05 -0.65 9.58 -39.24 -0.38 -1.03 16 27 C 0.12 2.48 6.56 -67.93 -0.45 2.04 16 28 C -0.20 -3.81 9.80 -26.69 -0.26 -4.07 16 29 C -0.22 -4.39 10.36 -26.69 -0.28 -4.66 16 30 H 0.25 6.65 8.32 -40.82 -0.34 6.31 16 31 H 0.11 2.54 5.36 -51.93 -0.28 2.27 16 32 H 0.03 0.64 8.07 -51.93 -0.42 0.22 16 33 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.07 1.53 8.14 -51.93 -0.42 1.11 16 35 H 0.40 5.51 6.49 -40.82 -0.26 5.24 16 36 H 0.13 1.20 6.39 -52.49 -0.34 0.86 16 37 H 0.13 0.78 7.00 -52.49 -0.37 0.41 16 38 H 0.19 1.09 7.34 -52.49 -0.39 0.70 16 39 H 0.18 0.52 7.27 -52.49 -0.38 0.14 16 40 H 0.13 0.93 7.03 -52.49 -0.37 0.56 16 41 H 0.14 1.69 7.64 -52.49 -0.40 1.29 16 42 H 0.09 1.66 8.14 -51.93 -0.42 1.24 16 43 H 0.10 2.08 6.37 -51.93 -0.33 1.75 16 44 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 45 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 46 H 0.09 2.09 8.14 -51.93 -0.42 1.67 16 LS Contribution 386.82 15.07 5.83 5.83 Total: -1.00 -33.21 386.82 -10.96 -44.17 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: -7.18 Total: 8.24 kcal Atomic # 6 Polarization: -3.99 SS G_CDS: -5.10 Total: -9.09 kcal Atomic # 7 Polarization: -54.42 SS G_CDS: 0.45 Total: -53.97 kcal Atomic # 8 Polarization: -11.34 SS G_CDS: 0.09 Total: -11.25 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.03 Total: 16.07 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.21 -10.96 -44.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317557632.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.814 kcal (2) G-P(sol) polarization free energy of solvation -33.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.166 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.35 seconds