Wall clock time and date at job start Sat Apr 11 2020 06:05:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 119.99764 * 2 1 4 4 H 1.48497 * 109.47447 * 89.98205 * 3 2 1 5 5 H 1.48503 * 109.47259 * 209.98363 * 3 2 1 6 6 H 1.48500 * 109.47006 * 329.98455 * 3 2 1 7 7 C 1.37871 * 120.00182 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00416 * 357.61607 * 7 2 1 9 9 C 1.50699 * 119.99896 * 177.61107 * 7 2 1 10 10 H 1.08998 * 109.47427 * 27.71694 * 9 7 2 11 11 C 1.50706 * 109.47364 * 147.71916 * 9 7 2 12 12 O 1.21272 * 119.99725 * 97.04579 * 11 9 7 13 13 N 1.34780 * 119.99571 * 277.05068 * 11 9 7 14 14 C 1.46926 * 120.63208 * 359.71450 * 13 11 9 15 15 C 1.53624 * 108.53928 * 126.37003 * 14 13 11 16 16 C 1.53046 * 109.24390 * 54.85777 * 15 14 13 17 17 N 1.46492 * 109.45797 * 178.48625 * 16 15 14 18 18 C 1.35315 * 125.87051 * 34.78664 * 17 16 15 19 19 C 1.35355 * 106.17419 * 179.89853 * 18 17 16 20 20 N 1.33773 * 106.49475 * 0.35376 * 19 18 17 21 21 N 1.28627 * 108.89047 * 359.76981 * 20 19 18 22 22 C 1.53038 * 109.53404 * 298.50948 * 16 15 14 23 23 C 1.46931 * 120.62550 * 179.97438 * 13 11 9 24 24 C 1.50704 * 109.47324 * 267.71963 * 9 7 2 25 25 C 1.38235 * 119.99764 * 304.79527 * 24 9 7 26 26 C 1.38241 * 119.99895 * 179.81019 * 25 24 9 27 27 C 1.38234 * 119.99731 * 0.39629 * 26 25 24 28 28 C 1.38234 * 120.00156 * 359.86130 * 27 26 25 29 29 C 1.38230 * 120.00327 * 125.06978 * 24 9 7 30 30 H 0.97005 * 120.00497 * 0.02562 * 1 2 3 31 31 H 1.08999 * 109.58343 * 246.20139 * 14 13 11 32 32 H 1.09000 * 109.58593 * 6.62696 * 14 13 11 33 33 H 1.08994 * 109.63929 * 294.86244 * 15 14 13 34 34 H 1.09001 * 109.45477 * 174.73800 * 15 14 13 35 35 H 1.09003 * 109.45727 * 58.52511 * 16 15 14 36 36 H 1.07997 * 126.90915 * 0.02562 * 18 17 16 37 37 H 1.07993 * 126.75194 * 180.12556 * 19 18 17 38 38 H 1.09000 * 109.49797 * 301.41003 * 22 16 15 39 39 H 1.09001 * 109.52031 * 181.32910 * 22 16 15 40 40 H 1.08999 * 109.58814 * 353.36860 * 23 13 11 41 41 H 1.08995 * 109.58555 * 113.79677 * 23 13 11 42 42 H 1.07995 * 120.00057 * 359.97438 * 25 24 9 43 43 H 1.07999 * 119.99868 * 180.22953 * 26 25 24 44 44 H 1.08004 * 119.99714 * 179.83511 * 27 26 25 45 45 H 1.07999 * 120.00040 * 179.97438 * 28 27 26 46 46 H 1.08001 * 119.99912 * 359.97438 * 29 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4962 2.0468 1.4000 5 1 3.5468 1.4402 -0.6997 6 1 1.4466 2.6526 -0.7004 7 6 2.0045 -1.1940 0.0005 8 1 1.4653 -2.1289 0.0399 9 6 3.5105 -1.1945 -0.0539 10 1 3.8905 -0.2749 0.3912 11 6 4.0405 -2.3795 0.7117 12 8 4.3427 -3.3958 0.1231 13 7 4.1785 -2.3097 2.0506 14 6 3.8224 -1.0832 2.7770 15 6 2.8353 -1.4475 3.8964 16 6 3.4488 -2.5414 4.7735 17 7 2.5264 -2.8670 5.8640 18 6 1.1755 -2.8687 5.7860 19 6 0.7275 -3.2268 7.0120 20 7 1.8118 -3.4164 7.7722 21 7 2.8617 -3.1954 7.0627 22 6 3.7021 -3.7924 3.9292 23 6 4.6933 -3.4568 2.8109 24 6 3.9614 -1.2814 -1.4893 25 6 3.5181 -2.3162 -2.2915 26 6 3.9285 -2.3938 -3.6092 27 6 4.7887 -1.4411 -4.1224 28 6 5.2362 -0.4093 -3.3187 29 6 4.8226 -0.3296 -2.0021 30 1 -0.4851 0.8400 -0.0004 31 1 4.7202 -0.6399 3.2077 32 1 3.3553 -0.3754 2.0921 33 1 1.9046 -1.8102 3.4603 34 1 2.6331 -0.5651 4.5035 35 1 4.3920 -2.1869 5.1895 36 1 0.5757 -2.6339 4.9192 37 1 -0.3027 -3.3344 7.3175 38 1 2.7632 -4.1330 3.4928 39 1 4.1171 -4.5791 4.5592 40 1 4.8009 -4.3156 2.1483 41 1 5.6607 -3.2034 3.2442 42 1 2.8490 -3.0626 -1.8894 43 1 3.5792 -3.2002 -4.2370 44 1 5.1114 -1.5032 -5.1512 45 1 5.9085 0.3348 -3.7195 46 1 5.1721 0.4767 -1.3742 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362271513.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:16 Heat of formation + Delta-G solvation = 76.593620 kcal Electronic energy + Delta-G solvation = -30037.943599 eV Core-core repulsion = 26122.071266 eV Total energy + Delta-G solvation = -3915.872334 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 3.92 seconds Orbital eigenvalues (eV) -44.25581 -41.39677 -39.83326 -38.54486 -35.74876 -35.41273 -33.45111 -32.34407 -32.31112 -31.75991 -31.60238 -29.46047 -26.91682 -25.41217 -24.59276 -23.79064 -23.38298 -23.18448 -22.34051 -21.39293 -19.93507 -19.02538 -18.84540 -17.92192 -17.54108 -17.27557 -16.81556 -16.47022 -15.99141 -15.85675 -15.78309 -15.43814 -15.12316 -15.09488 -14.91996 -14.67894 -14.37494 -14.21484 -13.99109 -13.75893 -13.38928 -13.28719 -13.11062 -12.90167 -12.79119 -12.68085 -12.39166 -12.23116 -12.10490 -12.08930 -11.91716 -11.77828 -11.59793 -11.44647 -11.02856 -10.74264 -10.51026 -10.35361 -9.66216 -9.60624 -9.35292 -8.31236 -6.39922 0.62512 0.65083 0.72289 1.33088 1.33974 1.44143 1.50823 1.59811 1.82818 2.13701 2.33861 2.99755 3.16688 3.22678 3.44878 3.60966 3.79480 3.83880 3.96882 4.12536 4.14213 4.21613 4.22456 4.24135 4.32955 4.36112 4.42569 4.44457 4.49235 4.53900 4.64970 4.76763 4.79136 4.83570 4.86190 4.91081 4.92673 5.12114 5.22534 5.25272 5.34867 5.42898 5.62742 5.65140 5.72074 5.77215 5.97814 6.19879 6.30483 6.46005 6.63210 7.24295 7.35085 7.49689 8.83107 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014942 B = 0.003641 C = 0.003226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1873.512459 B = 7688.013674 C = 8678.431143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.040 3.960 3 Si 0.905 3.095 4 H -0.242 1.242 5 H -0.225 1.225 6 H -0.297 1.297 7 C -0.493 4.493 8 H 0.027 0.973 9 C 0.038 3.962 10 H 0.076 0.924 11 C 0.535 3.465 12 O -0.583 6.583 13 N -0.614 5.614 14 C 0.110 3.890 15 C -0.135 4.135 16 C 0.150 3.850 17 N -0.279 5.279 18 C -0.043 4.043 19 C -0.058 4.058 20 N -0.308 5.308 21 N -0.115 5.115 22 C -0.131 4.131 23 C 0.118 3.882 24 C -0.067 4.067 25 C -0.096 4.096 26 C -0.140 4.140 27 C -0.135 4.135 28 C -0.129 4.129 29 C -0.145 4.145 30 H 0.269 0.731 31 H 0.107 0.893 32 H 0.088 0.912 33 H 0.069 0.931 34 H 0.101 0.899 35 H 0.137 0.863 36 H 0.204 0.796 37 H 0.216 0.784 38 H 0.058 0.942 39 H 0.096 0.904 40 H 0.081 0.919 41 H 0.102 0.898 42 H 0.087 0.913 43 H 0.129 0.871 44 H 0.147 0.853 45 H 0.148 0.852 46 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.138 1.098 5.002 10.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.160 4.160 3 Si 0.727 3.273 4 H -0.166 1.166 5 H -0.148 1.148 6 H -0.224 1.224 7 C -0.531 4.531 8 H 0.046 0.954 9 C 0.016 3.984 10 H 0.094 0.906 11 C 0.326 3.674 12 O -0.463 6.463 13 N -0.346 5.346 14 C -0.013 4.013 15 C -0.175 4.175 16 C 0.050 3.950 17 N -0.073 5.073 18 C -0.194 4.194 19 C -0.216 4.216 20 N -0.173 5.173 21 N -0.093 5.093 22 C -0.170 4.170 23 C -0.004 4.004 24 C -0.068 4.068 25 C -0.115 4.115 26 C -0.158 4.158 27 C -0.153 4.153 28 C -0.147 4.147 29 C -0.162 4.162 30 H 0.078 0.922 31 H 0.125 0.875 32 H 0.107 0.893 33 H 0.088 0.912 34 H 0.120 0.880 35 H 0.154 0.846 36 H 0.221 0.779 37 H 0.233 0.767 38 H 0.077 0.923 39 H 0.114 0.886 40 H 0.099 0.901 41 H 0.120 0.880 42 H 0.105 0.895 43 H 0.147 0.853 44 H 0.165 0.835 45 H 0.166 0.834 46 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 10.335 0.410 5.708 11.814 hybrid contribution -1.730 0.559 -0.927 2.041 sum 8.604 0.969 4.781 9.891 Atomic orbital electron populations 1.69998 1.08223 1.28350 1.50341 1.25665 0.95183 1.02105 0.93071 0.86387 0.81133 0.78981 0.80767 1.16625 1.14767 1.22410 1.20269 0.87641 0.93089 1.52099 0.95445 1.18316 0.96163 0.94141 0.89776 0.90617 1.21087 0.74457 0.89584 0.82315 1.90561 1.52305 1.34077 1.69354 1.48103 1.65107 1.15570 1.05867 1.21966 0.99095 0.86513 0.93686 1.22299 0.99951 0.98539 0.96665 1.21867 0.92940 0.96629 0.83587 1.47816 1.07019 1.42671 1.09778 1.24095 0.84735 1.07648 1.02965 1.24124 1.00911 1.05776 0.90759 1.75029 0.96578 1.18602 1.27072 1.78206 1.22251 1.18769 0.90107 1.22214 1.01028 0.96807 0.96995 1.21558 0.96784 0.89801 0.92306 1.20201 0.94837 0.94775 0.96990 1.20844 0.98762 0.97603 0.94259 1.21351 0.99226 1.00297 0.94938 1.21338 0.98278 0.94919 1.00771 1.21366 1.00705 0.99143 0.93459 1.21325 0.98577 0.99198 0.97149 0.92200 0.87462 0.89347 0.91194 0.88045 0.84559 0.77923 0.76729 0.92309 0.88604 0.90094 0.87999 0.89498 0.85270 0.83495 0.83440 0.85433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -51.73 13.96 21.44 0.30 -51.43 16 2 C 0.04 2.00 5.47 84.65 0.46 2.47 16 3 Si 0.90 36.06 26.17 68.60 1.80 37.86 16 4 H -0.24 -8.49 7.11 99.48 0.71 -7.78 16 5 H -0.22 -8.08 4.52 99.48 0.45 -7.63 16 6 H -0.30 -12.60 7.11 99.48 0.71 -11.89 16 7 C -0.49 -24.62 7.71 25.60 0.20 -24.43 16 8 H 0.03 1.62 8.06 -2.91 -0.02 1.59 16 9 C 0.04 1.57 1.01 -13.03 -0.01 1.56 16 10 H 0.08 2.84 3.76 -2.39 -0.01 2.83 16 11 C 0.53 21.39 6.80 87.66 0.60 21.99 16 12 O -0.58 -26.65 14.39 -3.00 -0.04 -26.69 16 13 N -0.61 -18.56 2.97 -818.14 -2.43 -20.99 16 14 C 0.11 2.74 6.21 86.51 0.54 3.28 16 15 C -0.14 -3.03 4.98 30.82 0.15 -2.88 16 16 C 0.15 3.05 3.08 45.02 0.14 3.19 16 17 N -0.28 -6.73 3.25 -327.04 -1.06 -7.80 16 18 C -0.04 -0.98 10.69 83.49 0.89 -0.09 16 19 C -0.06 -1.36 12.05 83.73 1.01 -0.35 16 20 N -0.31 -9.01 12.41 -58.26 -0.72 -9.73 16 21 N -0.11 -3.28 13.17 37.02 0.49 -2.79 16 22 C -0.13 -2.87 5.68 30.66 0.17 -2.69 16 23 C 0.12 2.85 6.43 86.35 0.55 3.41 16 24 C -0.07 -2.82 4.41 -19.87 -0.09 -2.91 16 25 C -0.10 -4.19 7.99 22.27 0.18 -4.01 16 26 C -0.14 -5.01 10.05 22.27 0.22 -4.79 16 27 C -0.14 -4.09 10.05 22.27 0.22 -3.87 16 28 C -0.13 -3.92 10.05 22.27 0.22 -3.69 16 29 C -0.14 -5.16 8.67 22.27 0.19 -4.96 16 30 H 0.27 14.09 8.31 -92.70 -0.77 13.32 16 31 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.09 2.66 4.44 -2.39 -0.01 2.65 16 33 H 0.07 1.93 7.25 -2.39 -0.02 1.91 16 34 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.14 2.21 8.14 -2.39 -0.02 2.19 16 36 H 0.20 4.01 7.34 -2.91 -0.02 3.99 16 37 H 0.22 3.43 8.06 -2.91 -0.02 3.41 16 38 H 0.06 1.55 8.14 -2.39 -0.02 1.54 16 39 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 40 H 0.08 2.32 7.01 -2.39 -0.02 2.30 16 41 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 42 H 0.09 4.23 7.63 -2.91 -0.02 4.21 16 43 H 0.13 3.97 8.06 -2.91 -0.02 3.94 16 44 H 0.15 3.30 8.06 -2.91 -0.02 3.28 16 45 H 0.15 3.33 8.06 -2.91 -0.02 3.30 16 46 H 0.13 4.02 6.93 -2.91 -0.02 4.00 16 Total: -1.00 -70.53 368.18 4.72 -65.81 By element: Atomic # 1 Polarization: 33.80 SS G_CDS: 0.74 Total: 34.54 kcal Atomic # 6 Polarization: -24.43 SS G_CDS: 5.66 Total: -18.77 kcal Atomic # 7 Polarization: -89.31 SS G_CDS: -3.43 Total: -92.74 kcal Atomic # 8 Polarization: -26.65 SS G_CDS: -0.04 Total: -26.69 kcal Atomic # 14 Polarization: 36.06 SS G_CDS: 1.80 Total: 37.86 kcal Total: -70.53 4.72 -65.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362271513.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.400 kcal (2) G-P(sol) polarization free energy of solvation -70.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.806 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.92 seconds