Wall clock time and date at job start Sat Apr 11 2020 06:05:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86803 * 119.99773 * 2 1 4 4 H 1.48496 * 109.46993 * 239.99634 * 3 2 1 5 5 H 1.48499 * 109.47129 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47057 * 119.99893 * 3 2 1 7 7 C 1.37872 * 119.99996 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00065 * 180.02562 * 7 2 1 9 9 C 1.50707 * 120.00213 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47182 * 174.85220 * 9 7 2 11 11 H 1.09002 * 109.47085 * 54.19553 * 10 9 7 12 12 N 1.46496 * 109.47017 * 174.19643 * 10 9 7 13 13 C 1.34771 * 120.00217 * 278.68596 * 12 10 9 14 14 O 1.21538 * 120.00078 * 355.02696 * 13 12 10 15 15 C 1.47924 * 120.00252 * 175.02997 * 13 12 10 16 16 C 1.33747 * 125.55306 * 179.97438 * 15 13 12 17 17 C 1.50977 * 130.87702 * 359.11841 * 16 15 13 18 18 C 1.53854 * 106.39873 * 204.15659 * 17 16 15 19 19 C 1.52641 * 110.20825 * 306.81861 * 18 17 16 20 20 N 1.46655 * 111.73791 * 61.04374 * 19 18 17 21 21 C 1.30351 * 119.17387 * 326.11852 * 20 19 18 22 22 N 1.37108 * 131.39725 * 183.28868 * 21 20 19 23 23 N 1.38663 * 125.55339 * 359.97398 * 15 13 12 24 24 C 1.50701 * 109.47002 * 294.19694 * 10 9 7 25 25 C 1.38232 * 119.99746 * 279.73198 * 24 10 9 26 26 C 1.38234 * 119.99904 * 179.81553 * 25 24 10 27 27 C 1.38239 * 120.00250 * 0.38505 * 26 25 24 28 28 C 1.38236 * 119.99406 * 359.86716 * 27 26 25 29 29 C 1.38232 * 120.00072 * 99.99758 * 24 10 9 30 30 H 0.96995 * 119.99687 * 359.97438 * 1 2 3 31 31 H 1.09000 * 109.46703 * 54.84658 * 9 7 2 32 32 H 1.09000 * 109.46915 * 294.85092 * 9 7 2 33 33 H 0.97002 * 120.00182 * 98.67677 * 12 10 9 34 34 H 1.08994 * 110.06344 * 323.37769 * 17 16 15 35 35 H 1.09005 * 110.06094 * 84.93517 * 17 16 15 36 36 H 1.08995 * 109.34343 * 67.04644 * 18 17 16 37 37 H 1.09001 * 109.34794 * 186.59581 * 18 17 16 38 38 H 1.08997 * 109.02680 * 181.61809 * 19 18 17 39 39 H 1.08994 * 109.03059 * 300.53413 * 19 18 17 40 40 H 0.96993 * 126.23226 * 357.61304 * 22 21 20 41 41 H 0.97003 * 125.32944 * 359.68077 * 23 15 13 42 42 H 1.07999 * 120.00611 * 359.97438 * 25 24 10 43 43 H 1.08009 * 120.00320 * 180.22934 * 26 25 24 44 44 H 1.07991 * 120.00365 * 179.84089 * 27 26 25 45 45 H 1.08003 * 120.00108 * 179.97438 * 28 27 26 46 46 H 1.07999 * 120.00023 * 359.97438 * 29 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6964 -1.2124 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2404 -3.6592 -0.1283 11 1 2.9960 -3.5808 0.6534 12 7 1.5241 -4.9295 0.0106 13 6 1.2205 -5.4015 1.2360 14 8 1.6189 -4.8210 2.2267 15 6 0.4025 -6.6262 1.3751 16 6 0.0373 -7.1902 2.5316 17 6 0.3351 -6.7991 3.9591 18 6 0.2020 -8.0821 4.7977 19 6 -1.1533 -8.7378 4.5466 20 7 -1.3186 -9.1223 3.1410 21 6 -0.7813 -8.3819 2.2124 22 7 -0.8258 -8.4687 0.8448 23 7 -0.1105 -7.3764 0.3279 24 6 2.9069 -3.6034 -1.4787 25 6 2.2513 -4.0909 -2.5937 26 6 2.8611 -4.0362 -3.8331 27 6 4.1298 -3.5012 -3.9562 28 6 4.7875 -3.0185 -2.8402 29 6 4.1761 -3.0696 -1.6015 30 1 -0.4849 0.8400 0.0004 31 1 0.5574 -2.5181 -0.8400 32 1 0.6951 -2.5977 0.9329 33 1 1.2681 -5.4309 -0.7793 34 1 1.3489 -6.4061 4.0354 35 1 -0.3829 -6.0532 4.3000 36 1 0.9957 -8.7768 4.5233 37 1 0.2923 -7.8333 5.8551 38 1 -1.2387 -9.6274 5.1706 39 1 -1.9429 -8.0370 4.8174 40 1 -1.2697 -9.1593 0.3283 41 1 0.0069 -7.1782 -0.6144 42 1 1.2615 -4.5122 -2.4971 43 1 2.3474 -4.4138 -4.7049 44 1 4.6073 -3.4609 -4.9240 45 1 5.7789 -2.6009 -2.9362 46 1 4.6899 -2.6923 -0.7297 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362333172.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:36 Heat of formation + Delta-G solvation = 83.018043 kcal Electronic energy + Delta-G solvation = -29137.466822 eV Core-core repulsion = 25221.873072 eV Total energy + Delta-G solvation = -3915.593750 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 3.42 seconds Orbital eigenvalues (eV) -41.13700 -39.60007 -38.49323 -36.77054 -35.33510 -33.17244 -32.83922 -31.34592 -30.56970 -30.35695 -29.87619 -28.68454 -25.64749 -25.06335 -23.29255 -22.57297 -22.44861 -22.11311 -20.08795 -19.68587 -18.88718 -18.47739 -17.28656 -16.73655 -16.10824 -15.73895 -15.57654 -15.12155 -14.98643 -14.80131 -14.58081 -14.25003 -14.13116 -13.70070 -13.60942 -13.21057 -13.08323 -13.02324 -12.89473 -12.58753 -12.23200 -12.07832 -11.63536 -11.45600 -11.25044 -11.04939 -10.90426 -10.83387 -10.74791 -10.54065 -10.17446 -10.07423 -9.97684 -9.29821 -9.25388 -8.84333 -8.72726 -8.58223 -8.40471 -8.18163 -7.15909 -6.05295 -4.07374 1.13608 1.64530 1.70261 1.74502 2.79680 3.19011 3.31237 3.35765 3.38325 3.44698 3.73704 4.15493 4.40926 4.48008 4.83313 5.00700 5.11106 5.13061 5.15853 5.21063 5.26555 5.32693 5.33736 5.40519 5.68887 5.75832 5.79869 5.87371 5.90622 5.96396 6.05188 6.07403 6.23528 6.26411 6.32814 6.37592 6.52641 6.57164 6.63283 6.74169 6.80535 7.01730 7.12394 7.31994 7.46550 7.57674 7.59535 7.75637 7.90897 8.23209 8.25361 8.33804 8.95787 9.56145 11.06237 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011245 B = 0.003313 C = 0.002787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2489.454668 B = 8449.213214 C =10044.538402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.062 3.938 3 Si 0.890 3.110 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.514 4.514 8 H 0.058 0.942 9 C 0.025 3.975 10 C 0.181 3.819 11 H 0.091 0.909 12 N -0.715 5.715 13 C 0.579 3.421 14 O -0.499 6.499 15 C 0.127 3.873 16 C -0.203 4.203 17 C -0.040 4.040 18 C -0.147 4.147 19 C 0.078 3.922 20 N -0.614 5.614 21 C 0.422 3.578 22 N -0.498 5.498 23 N -0.518 5.518 24 C -0.048 4.048 25 C -0.122 4.122 26 C -0.121 4.121 27 C -0.133 4.133 28 C -0.119 4.119 29 C -0.096 4.096 30 H 0.261 0.739 31 H 0.024 0.976 32 H 0.026 0.974 33 H 0.388 0.612 34 H 0.090 0.910 35 H 0.079 0.921 36 H 0.063 0.937 37 H 0.073 0.927 38 H 0.077 0.923 39 H 0.058 0.942 40 H 0.446 0.554 41 H 0.440 0.560 42 H 0.113 0.887 43 H 0.115 0.885 44 H 0.114 0.886 45 H 0.117 0.883 46 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.685 -15.870 -2.946 16.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.140 4.140 3 Si 0.718 3.282 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.553 4.553 8 H 0.076 0.924 9 C -0.013 4.013 10 C 0.079 3.921 11 H 0.109 0.891 12 N -0.366 5.366 13 C 0.361 3.639 14 O -0.371 6.371 15 C 0.014 3.986 16 C -0.220 4.220 17 C -0.078 4.078 18 C -0.186 4.186 19 C -0.053 4.053 20 N -0.347 5.347 21 C 0.148 3.852 22 N -0.233 5.233 23 N -0.247 5.247 24 C -0.049 4.049 25 C -0.140 4.140 26 C -0.139 4.139 27 C -0.151 4.151 28 C -0.137 4.137 29 C -0.115 4.115 30 H 0.071 0.929 31 H 0.042 0.958 32 H 0.044 0.956 33 H 0.222 0.778 34 H 0.108 0.892 35 H 0.097 0.903 36 H 0.081 0.919 37 H 0.091 0.909 38 H 0.095 0.905 39 H 0.076 0.924 40 H 0.293 0.707 41 H 0.285 0.715 42 H 0.131 0.869 43 H 0.133 0.867 44 H 0.132 0.868 45 H 0.135 0.865 46 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 2.287 -16.088 -2.231 16.402 hybrid contribution 0.403 1.284 -1.239 1.830 sum 2.690 -14.804 -3.471 15.442 Atomic orbital electron populations 1.69947 1.06049 1.26802 1.50389 1.24932 0.94778 0.99134 0.95127 0.86675 0.79656 0.83178 0.78674 1.20219 1.21307 1.20090 1.20967 0.92950 0.90264 1.51136 0.92384 1.19438 0.93488 0.90335 0.98047 1.20449 0.95557 0.82670 0.93430 0.89061 1.46254 1.58960 1.24573 1.06764 1.17246 0.80063 0.82230 0.84351 1.90858 1.51839 1.57251 1.37194 1.19970 0.97626 0.93089 0.87894 1.21570 1.05897 0.99011 0.95525 1.20229 1.03321 0.96628 0.87668 1.22045 0.98616 0.97521 1.00389 1.21733 0.95764 0.99078 0.88700 1.72174 1.32085 1.31102 0.99342 1.19867 0.91183 0.90157 0.83997 1.42865 1.55638 1.22113 1.02726 1.43812 1.54350 1.19971 1.06524 1.19843 0.93785 0.96377 0.94879 1.20794 0.99135 1.01520 0.92569 1.20974 0.95461 1.00498 0.96933 1.21001 0.95542 1.00394 0.98203 1.21065 0.99868 0.99964 0.92828 1.20979 0.94468 0.98249 0.97763 0.92902 0.95801 0.95575 0.77792 0.89151 0.90275 0.91870 0.90866 0.90466 0.92388 0.70700 0.71456 0.86914 0.86671 0.86787 0.86496 0.85899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.16 13.29 55.43 0.74 -25.42 16 2 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 3 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.51 -13.70 8.53 -34.44 -0.29 -13.99 16 8 H 0.06 1.48 6.79 -52.49 -0.36 1.13 16 9 C 0.02 0.60 4.68 -27.88 -0.13 0.47 16 10 C 0.18 3.41 2.19 -69.08 -0.15 3.26 16 11 H 0.09 1.85 7.49 -51.93 -0.39 1.46 16 12 N -0.71 -10.84 5.04 -55.86 -0.28 -11.12 16 13 C 0.58 9.51 7.69 -12.30 -0.09 9.42 16 14 O -0.50 -9.99 15.04 5.33 0.08 -9.91 16 15 C 0.13 1.76 7.01 -82.38 -0.58 1.19 16 16 C -0.20 -2.95 6.06 -102.03 -0.62 -3.57 16 17 C -0.04 -0.56 5.74 -27.30 -0.16 -0.72 16 18 C -0.15 -1.72 5.96 -26.47 -0.16 -1.88 16 19 C 0.08 0.96 6.93 -4.14 -0.03 0.93 16 20 N -0.61 -8.79 11.06 -58.71 -0.65 -9.43 16 21 C 0.42 5.79 8.35 -154.86 -1.29 4.49 16 22 N -0.50 -5.18 7.49 32.37 0.24 -4.93 16 23 N -0.52 -5.27 7.34 33.19 0.24 -5.03 16 24 C -0.05 -0.82 4.50 -104.63 -0.47 -1.29 16 25 C -0.12 -1.80 9.02 -39.58 -0.36 -2.16 16 26 C -0.12 -1.61 10.05 -39.58 -0.40 -2.00 16 27 C -0.13 -1.76 10.05 -39.58 -0.40 -2.16 16 28 C -0.12 -1.70 10.05 -39.58 -0.40 -2.10 16 29 C -0.10 -1.58 8.83 -39.58 -0.35 -1.93 16 30 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 31 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.03 0.71 8.08 -51.93 -0.42 0.29 16 33 H 0.39 4.50 5.97 -40.82 -0.24 4.25 16 34 H 0.09 1.32 7.23 -51.93 -0.38 0.94 16 35 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.45 3.23 8.96 -182.36 -1.63 1.60 16 41 H 0.44 3.01 8.16 -182.35 -1.49 1.53 16 42 H 0.11 1.43 6.95 -52.49 -0.36 1.07 16 43 H 0.12 1.22 8.06 -52.48 -0.42 0.80 16 44 H 0.11 1.21 8.06 -52.49 -0.42 0.79 16 45 H 0.12 1.40 8.06 -52.48 -0.42 0.97 16 46 H 0.12 1.98 7.84 -52.49 -0.41 1.57 16 LS Contribution 380.02 15.07 5.73 5.73 Total: -1.00 -33.82 380.02 -13.52 -47.33 By element: Atomic # 1 Polarization: 15.59 SS G_CDS: -8.62 Total: 6.96 kcal Atomic # 6 Polarization: -4.45 SS G_CDS: -5.97 Total: -10.42 kcal Atomic # 7 Polarization: -56.22 SS G_CDS: 0.29 Total: -55.93 kcal Atomic # 8 Polarization: -9.99 SS G_CDS: 0.08 Total: -9.91 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.82 -13.52 -47.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362333172.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.351 kcal (2) G-P(sol) polarization free energy of solvation -33.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.333 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.42 seconds