Wall clock time and date at job start Sat Apr 11 2020 06:05:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86808 * 119.99460 * 2 1 4 4 H 1.48498 * 109.46652 * 179.97438 * 3 2 1 5 5 H 1.48492 * 109.47205 * 300.00093 * 3 2 1 6 6 H 1.48499 * 109.46816 * 59.99771 * 3 2 1 7 7 C 1.37874 * 120.00160 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99590 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00261 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.47038 * 180.02562 * 9 7 2 11 11 H 1.08997 * 109.47208 * 305.00107 * 10 9 7 12 12 N 1.46504 * 109.46999 * 65.00171 * 10 9 7 13 13 C 1.34777 * 119.99811 * 204.99578 * 12 10 9 14 14 O 1.21283 * 120.00070 * 0.02562 * 13 12 10 15 15 C 1.50695 * 120.00254 * 179.97438 * 13 12 10 16 16 H 1.09006 * 109.74986 * 299.38114 * 15 13 12 17 17 C 1.53298 * 109.76256 * 178.85710 * 15 13 12 18 18 C 1.53157 * 109.37807 * 191.87429 * 17 15 13 19 19 C 1.53306 * 109.48242 * 69.05257 * 18 17 15 20 20 N 1.46302 * 108.76841 * 309.85604 * 19 18 17 21 21 N 1.39763 * 128.30857 * 197.08369 * 20 19 18 22 22 C 1.30970 * 106.58153 * 179.85821 * 21 20 19 23 23 N 1.33469 * 109.00866 * 0.03404 * 22 21 20 24 24 C 1.30334 * 109.72579 * 0.02562 * 23 22 21 25 25 C 1.50704 * 109.47130 * 184.99903 * 10 9 7 26 26 C 1.38236 * 120.00117 * 279.72850 * 25 10 9 27 27 C 1.38229 * 120.00180 * 179.80716 * 26 25 10 28 28 C 1.38242 * 119.99690 * 0.41851 * 27 26 25 29 29 C 1.38231 * 120.00203 * 359.81594 * 28 27 26 30 30 C 1.38237 * 119.99576 * 99.99916 * 25 10 9 31 31 H 0.97003 * 120.00488 * 0.02562 * 1 2 3 32 32 H 1.08997 * 109.46919 * 59.99854 * 9 7 2 33 33 H 1.09004 * 109.46682 * 300.00277 * 9 7 2 34 34 H 0.96994 * 119.99990 * 25.00031 * 12 10 9 35 35 H 1.09000 * 109.55881 * 71.83162 * 17 15 13 36 36 H 1.08999 * 109.33106 * 311.77977 * 17 15 13 37 37 H 1.08993 * 109.47506 * 309.04715 * 18 17 15 38 38 H 1.09002 * 109.46888 * 189.04816 * 18 17 15 39 39 H 1.08996 * 109.59173 * 190.06601 * 19 18 17 40 40 H 1.09001 * 109.59012 * 69.63788 * 19 18 17 41 41 H 1.08004 * 125.50099 * 180.02562 * 22 21 20 42 42 H 1.08004 * 119.99789 * 359.97438 * 26 25 10 43 43 H 1.07994 * 120.00594 * 180.21045 * 27 26 25 44 44 H 1.08005 * 119.99976 * 179.78909 * 28 27 26 45 45 H 1.07995 * 120.00305 * 179.97438 * 29 28 27 46 46 H 1.07995 * 120.00193 * 359.97438 * 30 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.7090 1.3466 0.0006 5 1 1.8902 2.3965 -1.2124 6 1 1.8901 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0001 9 6 1.2512 -2.4992 -0.0017 10 6 2.2455 -3.6619 -0.0015 11 1 2.9302 -3.5546 -0.8426 12 7 3.0055 -3.6543 1.2510 13 6 4.2302 -4.2149 1.2995 14 8 4.7032 -4.7253 0.3062 15 6 5.0122 -4.2066 2.5876 16 1 5.1933 -3.1786 2.9019 17 6 6.3506 -4.9263 2.3860 18 6 7.0040 -5.1754 3.7487 19 6 6.1931 -6.2227 4.5207 20 7 4.7832 -5.8325 4.5038 21 7 3.7489 -6.2855 5.3275 22 6 2.6651 -5.6564 4.9469 23 7 2.9686 -4.8407 3.9350 24 6 4.2385 -4.9374 3.6577 25 6 1.4963 -4.9636 -0.1264 26 6 0.8986 -5.5266 0.9856 27 6 0.2080 -6.7185 0.8702 28 6 0.1224 -7.3518 -0.3556 29 6 0.7242 -6.7912 -1.4667 30 6 1.4115 -5.5973 -1.3521 31 1 -0.4851 0.8400 -0.0004 32 1 0.6249 -2.5563 -0.8919 33 1 0.6241 -2.5574 0.8880 34 1 2.6273 -3.2458 2.0453 35 1 7.0085 -4.3089 1.7743 36 1 6.1762 -5.8792 1.8863 37 1 7.0285 -4.2448 4.3155 38 1 8.0212 -5.5389 3.6028 39 1 6.5464 -6.2719 5.5506 40 1 6.3083 -7.1970 4.0458 41 1 1.6840 -5.7779 5.3817 42 1 0.9689 -5.0339 1.9441 43 1 -0.2618 -7.1567 1.7383 44 1 -0.4142 -8.2848 -0.4451 45 1 0.6577 -7.2862 -2.4242 46 1 1.8818 -5.1594 -2.2200 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362516547.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:51 Heat of formation + Delta-G solvation = 67.571098 kcal Electronic energy + Delta-G solvation = -30144.752520 eV Core-core repulsion = 26228.488941 eV Total energy + Delta-G solvation = -3916.263580 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 2.01 seconds Orbital eigenvalues (eV) -42.44351 -39.66842 -38.51868 -36.86030 -35.10453 -33.44164 -32.63695 -31.11522 -30.57313 -30.34320 -29.73918 -28.68152 -25.54707 -24.46336 -23.01043 -22.20073 -22.08978 -21.85857 -20.75620 -19.68834 -19.27685 -17.32901 -16.96685 -16.42504 -16.12682 -16.06237 -15.62387 -15.25018 -15.02687 -14.71825 -14.52975 -14.45397 -14.07709 -13.62917 -13.34983 -13.12453 -12.91071 -12.67967 -12.46615 -12.35977 -12.29476 -12.05060 -11.85181 -11.46773 -11.45866 -11.12770 -11.08443 -10.86331 -10.67270 -10.54496 -10.39785 -10.04835 -9.86981 -9.72808 -9.72646 -9.29316 -9.19186 -8.46552 -8.39744 -8.32911 -8.09462 -6.04642 -4.07723 1.50749 1.86581 1.90917 2.13430 2.85276 3.03869 3.28450 3.36842 3.40107 3.65447 3.94263 4.08030 4.28293 4.30709 4.42665 4.46888 4.78601 4.84332 5.01207 5.05427 5.17393 5.30257 5.32390 5.34290 5.37690 5.42251 5.46274 5.52697 5.65973 5.69735 5.95269 6.02394 6.03616 6.24136 6.25071 6.37460 6.44802 6.53799 6.63132 6.66030 6.93261 6.96629 6.98924 7.21678 7.50697 7.56525 7.68593 7.92032 8.05581 8.18939 8.31083 8.76275 8.97868 9.56769 11.06017 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.008240 B = 0.004772 C = 0.003633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3397.429490 B = 5866.497738 C = 7705.708276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.060 3.940 3 Si 0.890 3.110 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.518 4.518 8 H 0.058 0.942 9 C 0.023 3.977 10 C 0.184 3.816 11 H 0.086 0.914 12 N -0.679 5.679 13 C 0.525 3.475 14 O -0.547 6.547 15 C -0.033 4.033 16 H 0.129 0.871 17 C -0.109 4.109 18 C -0.137 4.137 19 C 0.126 3.874 20 N -0.373 5.373 21 N -0.320 5.320 22 C 0.201 3.799 23 N -0.525 5.525 24 C 0.287 3.713 25 C -0.073 4.073 26 C -0.100 4.100 27 C -0.127 4.127 28 C -0.135 4.135 29 C -0.126 4.126 30 C -0.109 4.109 31 H 0.261 0.739 32 H 0.034 0.966 33 H 0.027 0.973 34 H 0.411 0.589 35 H 0.095 0.905 36 H 0.084 0.916 37 H 0.079 0.921 38 H 0.100 0.900 39 H 0.095 0.905 40 H 0.088 0.912 41 H 0.218 0.782 42 H 0.126 0.874 43 H 0.112 0.888 44 H 0.111 0.889 45 H 0.114 0.886 46 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.081 -12.864 8.216 18.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.141 4.141 3 Si 0.718 3.282 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.556 4.556 8 H 0.076 0.924 9 C -0.014 4.014 10 C 0.080 3.920 11 H 0.104 0.896 12 N -0.327 5.327 13 C 0.308 3.692 14 O -0.426 6.426 15 C -0.057 4.057 16 H 0.146 0.854 17 C -0.147 4.147 18 C -0.175 4.175 19 C 0.004 3.996 20 N -0.164 5.164 21 N -0.148 5.148 22 C -0.102 4.102 23 N -0.252 5.252 24 C 0.010 3.990 25 C -0.074 4.074 26 C -0.118 4.118 27 C -0.145 4.145 28 C -0.154 4.154 29 C -0.145 4.145 30 C -0.128 4.128 31 H 0.070 0.930 32 H 0.052 0.948 33 H 0.045 0.955 34 H 0.248 0.752 35 H 0.113 0.887 36 H 0.103 0.897 37 H 0.098 0.902 38 H 0.119 0.881 39 H 0.114 0.886 40 H 0.106 0.894 41 H 0.234 0.766 42 H 0.144 0.856 43 H 0.130 0.870 44 H 0.129 0.871 45 H 0.132 0.868 46 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 10.098 -13.446 7.959 18.604 hybrid contribution 0.185 1.137 0.442 1.234 sum 10.283 -12.309 8.401 18.107 Atomic orbital electron populations 1.69970 1.05999 1.26602 1.50420 1.24980 0.94773 0.99148 0.95219 0.86563 0.80127 0.83902 0.77573 1.19762 1.21053 1.21072 1.21157 0.93050 0.90390 1.51003 0.92384 1.19392 0.93270 0.90067 0.98660 1.20268 0.93406 0.92093 0.86207 0.89608 1.45937 1.15962 1.56239 1.14549 1.19645 0.82354 0.78922 0.88319 1.90676 1.69679 1.46255 1.35973 1.20199 0.94177 1.00917 0.90446 0.85364 1.21547 0.93670 1.02740 0.96736 1.22044 0.99866 0.99353 0.96283 1.21909 0.75137 0.99575 1.02936 1.50227 1.09105 1.31724 1.25388 1.77933 0.95902 1.23950 1.16995 1.26079 0.98662 0.92201 0.93224 1.70275 1.11534 1.25748 1.17617 1.23715 0.89907 0.91929 0.93412 1.20538 0.97053 0.96536 0.93305 1.21060 0.96547 0.95304 0.98920 1.21037 1.00111 0.96212 0.97179 1.20981 1.01116 0.99952 0.93312 1.21000 0.98944 0.96334 0.98179 1.21008 0.99227 0.95102 0.97416 0.92973 0.94793 0.95519 0.75219 0.88663 0.89734 0.90226 0.88136 0.88625 0.89354 0.76589 0.85632 0.86974 0.87051 0.86779 0.86309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.68 13.29 55.43 0.74 -24.94 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 20.94 29.54 -169.99 -5.02 15.92 16 4 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.52 -13.68 8.84 -34.44 -0.30 -13.99 16 8 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 9 C 0.02 0.57 4.50 -27.89 -0.13 0.44 16 10 C 0.18 3.83 2.12 -69.08 -0.15 3.68 16 11 H 0.09 1.91 7.44 -51.93 -0.39 1.52 16 12 N -0.68 -12.63 3.70 -54.93 -0.20 -12.84 16 13 C 0.53 9.10 7.10 -10.99 -0.08 9.02 16 14 O -0.55 -10.91 15.48 5.55 0.09 -10.83 16 15 C -0.03 -0.43 2.93 -92.66 -0.27 -0.70 16 16 H 0.13 1.45 8.14 -51.93 -0.42 1.03 16 17 C -0.11 -1.09 4.75 -26.50 -0.13 -1.21 16 18 C -0.14 -0.91 5.95 -26.49 -0.16 -1.07 16 19 C 0.13 1.03 7.30 -3.99 -0.03 1.00 16 20 N -0.37 -4.61 4.04 -58.29 -0.24 -4.84 16 21 N -0.32 -4.34 12.74 29.38 0.37 -3.97 16 22 C 0.20 2.64 13.04 -91.40 -1.19 1.44 16 23 N -0.52 -7.78 9.93 -11.83 -0.12 -7.90 16 24 C 0.29 3.95 7.01 -155.78 -1.09 2.86 16 25 C -0.07 -1.42 4.91 -104.62 -0.51 -1.93 16 26 C -0.10 -1.81 9.33 -39.59 -0.37 -2.18 16 27 C -0.13 -2.04 10.05 -39.58 -0.40 -2.44 16 28 C -0.14 -2.06 10.05 -39.58 -0.40 -2.46 16 29 C -0.13 -2.00 10.05 -39.58 -0.40 -2.40 16 30 C -0.11 -1.97 9.67 -39.58 -0.38 -2.35 16 31 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 32 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.41 7.61 7.66 -40.82 -0.31 7.30 16 35 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.08 0.98 7.71 -51.93 -0.40 0.58 16 37 H 0.08 0.50 8.12 -51.93 -0.42 0.08 16 38 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 41 H 0.22 2.07 8.06 -52.48 -0.42 1.65 16 42 H 0.13 2.27 7.71 -52.48 -0.40 1.86 16 43 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 44 H 0.11 1.38 8.06 -52.48 -0.42 0.95 16 45 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 46 H 0.12 2.04 8.04 -52.49 -0.42 1.61 16 LS Contribution 385.01 15.07 5.80 5.80 Total: -1.00 -33.27 385.01 -11.20 -44.46 By element: Atomic # 1 Polarization: 16.40 SS G_CDS: -6.54 Total: 9.86 kcal Atomic # 6 Polarization: -4.65 SS G_CDS: -6.08 Total: -10.72 kcal Atomic # 7 Polarization: -55.04 SS G_CDS: 0.55 Total: -54.49 kcal Atomic # 8 Polarization: -10.91 SS G_CDS: 0.09 Total: -10.83 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.27 -11.20 -44.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362516547.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.032 kcal (2) G-P(sol) polarization free energy of solvation -33.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.461 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.01 seconds