Wall clock time and date at job start Sat Apr 11 2020 06:06:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86810 * 119.99761 * 2 1 4 4 H 1.48498 * 109.46750 * 270.00083 * 3 2 1 5 5 H 1.48497 * 109.46959 * 29.99935 * 3 2 1 6 6 H 1.48495 * 109.46869 * 150.00248 * 3 2 1 7 7 C 1.37876 * 120.00136 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99815 * 181.99058 * 7 2 1 9 9 C 1.50696 * 120.00174 * 1.98632 * 7 2 1 10 10 H 1.09000 * 109.47401 * 175.34156 * 9 7 2 11 11 C 1.50700 * 109.46795 * 55.34004 * 9 7 2 12 12 O 1.21285 * 120.00130 * 239.99585 * 11 9 7 13 13 N 1.34776 * 120.00218 * 60.00691 * 11 9 7 14 14 C 1.46926 * 120.62480 * 359.71064 * 13 11 9 15 15 C 1.53627 * 108.54019 * 126.37582 * 14 13 11 16 16 C 1.53042 * 109.24003 * 54.85395 * 15 14 13 17 17 C 1.50706 * 109.45887 * 178.48904 * 16 15 14 18 18 N 1.33231 * 125.52886 * 240.06908 * 17 16 15 19 19 C 1.30835 * 109.82674 * 179.97438 * 18 17 16 20 20 N 1.34420 * 108.08021 * 0.02562 * 19 18 17 21 21 H 0.97008 * 126.82417 * 179.97438 * 20 19 18 22 22 N 1.30712 * 125.52011 * 59.76417 * 17 16 15 23 23 C 1.53036 * 109.53887 * 298.50986 * 16 15 14 24 24 C 1.46920 * 120.63257 * 180.02562 * 13 11 9 25 25 C 1.50707 * 109.47084 * 295.34546 * 9 7 2 26 26 C 1.38233 * 119.99815 * 167.23754 * 25 9 7 27 27 C 1.38236 * 119.99920 * 179.97438 * 26 25 9 28 28 C 1.38238 * 119.99764 * 359.97438 * 27 26 25 29 29 C 1.38234 * 120.00016 * 0.07418 * 28 27 26 30 30 C 1.38229 * 120.00232 * 359.88476 * 29 28 27 31 31 H 0.97003 * 120.00145 * 359.97438 * 1 2 3 32 32 H 1.09003 * 109.58641 * 246.20133 * 14 13 11 33 33 H 1.08996 * 109.58872 * 6.63203 * 14 13 11 34 34 H 1.09001 * 109.63261 * 294.86204 * 15 14 13 35 35 H 1.08996 * 109.46016 * 174.73626 * 15 14 13 36 36 H 1.09000 * 109.46411 * 58.53563 * 16 15 14 37 37 H 1.08005 * 125.95898 * 179.97438 * 19 18 17 38 38 H 1.08993 * 109.50065 * 301.41123 * 23 16 15 39 39 H 1.09006 * 109.52344 * 181.33728 * 23 16 15 40 40 H 1.09001 * 109.58569 * 353.36851 * 24 13 11 41 41 H 1.08999 * 109.59169 * 113.64872 * 24 13 11 42 42 H 1.08004 * 120.00579 * 359.97331 * 26 25 9 43 43 H 1.08001 * 120.00197 * 179.72207 * 27 26 25 44 44 H 1.08003 * 119.99522 * 179.97438 * 28 27 26 45 45 H 1.08003 * 119.99811 * 179.97438 * 29 28 27 46 46 H 1.07998 * 120.00441 * 180.11249 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6179 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0841 -1.1943 0.0320 9 6 1.2519 -2.4987 -0.0464 10 1 1.9596 -3.3241 -0.1233 11 6 0.3365 -2.5087 -1.2434 12 8 -0.8607 -2.6288 -1.0904 13 7 0.8481 -2.3843 -2.4841 14 6 2.2955 -2.2319 -2.6850 15 6 2.7670 -3.3068 -3.6762 16 6 1.9404 -3.2061 -4.9602 17 6 2.4237 -4.2343 -5.9504 18 7 2.9144 -3.9726 -7.1611 19 6 3.2397 -5.0899 -7.7591 20 7 2.9572 -6.1064 -6.9263 21 1 3.0910 -7.0520 -7.0966 22 7 2.4347 -5.5272 -5.7583 23 6 0.4655 -3.4598 -4.6407 24 6 -0.0316 -2.3917 -3.6608 25 6 0.4358 -2.6523 1.2113 26 6 -0.5371 -3.6313 1.2887 27 6 -1.2853 -3.7725 2.4425 28 6 -1.0602 -2.9350 3.5190 29 6 -0.0880 -1.9554 3.4412 30 6 0.6607 -1.8147 2.2878 31 1 -0.4850 0.8401 0.0004 32 1 2.5062 -1.2414 -3.0885 33 1 2.8119 -2.3586 -1.7335 34 1 2.6351 -4.2948 -3.2351 35 1 3.8203 -3.1498 -3.9083 36 1 2.0533 -2.2097 -5.3876 37 1 3.6609 -5.1798 -8.7496 38 1 0.3551 -4.4463 -4.1907 39 1 -0.1198 -3.4114 -5.5591 40 1 -1.0512 -2.6238 -3.3533 41 1 -0.0085 -1.4132 -4.1405 42 1 -0.7127 -4.2859 0.4478 43 1 -2.0484 -4.5344 2.5013 44 1 -1.6451 -3.0451 4.4202 45 1 0.0875 -1.3008 4.2821 46 1 1.4215 -1.0505 2.2276 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362999736.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:01 Heat of formation + Delta-G solvation = 79.088755 kcal Electronic energy + Delta-G solvation = -30048.982603 eV Core-core repulsion = 26133.218467 eV Total energy + Delta-G solvation = -3915.764137 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 2.16 seconds Orbital eigenvalues (eV) -42.23220 -39.36333 -37.97154 -36.45262 -33.74414 -33.31317 -32.04984 -31.03010 -30.47206 -30.34503 -29.62189 -27.29925 -25.39411 -23.82465 -22.94811 -22.72138 -21.30678 -21.17489 -20.30104 -19.55774 -18.50948 -18.07641 -16.96085 -15.71873 -15.54313 -15.38870 -15.07254 -14.95646 -14.72753 -14.32705 -14.19562 -13.73100 -13.59930 -13.45608 -13.09666 -12.66050 -12.39432 -12.24155 -12.14127 -12.07072 -11.66619 -11.61375 -11.30918 -11.02537 -10.98318 -10.78548 -10.72600 -10.59779 -10.42741 -10.22217 -10.11028 -10.08251 -10.00038 -9.64161 -9.57777 -9.32998 -8.66516 -8.22722 -7.64486 -7.56751 -7.34115 -6.09436 -4.24209 1.49005 2.53183 2.59654 2.66449 2.80461 3.22626 3.32374 3.32708 3.92525 4.10370 4.22771 4.38119 4.58411 4.76477 5.05361 5.10989 5.14901 5.20726 5.47916 5.55347 5.76448 5.86536 5.90091 6.00018 6.02675 6.07131 6.11235 6.16064 6.20944 6.23869 6.34542 6.44473 6.46460 6.59418 6.65899 6.73053 6.76382 6.84211 6.87502 6.93630 7.18580 7.25994 7.58094 7.62514 7.69224 7.73233 7.83205 7.98144 8.21180 8.31459 8.59104 8.80461 9.40099 9.72798 10.91017 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014190 B = 0.003517 C = 0.003056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1972.682819 B = 7959.355934 C = 9160.935418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.840 5.840 2 C 0.076 3.924 3 Si 0.883 3.117 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.271 1.271 7 C -0.538 4.538 8 H 0.068 0.932 9 C 0.057 3.943 10 H 0.056 0.944 11 C 0.556 3.444 12 O -0.548 6.548 13 N -0.614 5.614 14 C 0.124 3.876 15 C -0.127 4.127 16 C 0.006 3.994 17 C 0.242 3.758 18 N -0.543 5.543 19 C 0.254 3.746 20 N -0.490 5.490 21 H 0.439 0.561 22 N -0.308 5.308 23 C -0.119 4.119 24 C 0.119 3.881 25 C -0.014 4.014 26 C -0.100 4.100 27 C -0.145 4.145 28 C -0.145 4.145 29 C -0.148 4.148 30 C -0.064 4.064 31 H 0.264 0.736 32 H 0.057 0.943 33 H 0.111 0.889 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.097 0.903 37 H 0.220 0.780 38 H 0.070 0.930 39 H 0.065 0.935 40 H 0.088 0.912 41 H 0.054 0.946 42 H 0.106 0.894 43 H 0.100 0.900 44 H 0.099 0.901 45 H 0.101 0.899 46 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.329 -9.186 -11.200 15.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C -0.132 4.132 3 Si 0.710 3.290 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.196 1.196 7 C -0.576 4.576 8 H 0.086 0.914 9 C 0.036 3.964 10 H 0.074 0.926 11 C 0.347 3.653 12 O -0.425 6.425 13 N -0.348 5.348 14 C 0.000 4.000 15 C -0.166 4.166 16 C -0.015 4.015 17 C -0.041 4.041 18 N -0.270 5.270 19 C -0.045 4.045 20 N -0.208 5.208 21 H 0.284 0.716 22 N -0.136 5.136 23 C -0.158 4.158 24 C -0.005 4.005 25 C -0.015 4.015 26 C -0.118 4.118 27 C -0.163 4.163 28 C -0.164 4.164 29 C -0.166 4.166 30 C -0.082 4.082 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.129 0.871 34 H 0.089 0.911 35 H 0.086 0.914 36 H 0.115 0.885 37 H 0.236 0.764 38 H 0.089 0.911 39 H 0.084 0.916 40 H 0.106 0.894 41 H 0.073 0.927 42 H 0.125 0.875 43 H 0.118 0.882 44 H 0.117 0.883 45 H 0.119 0.881 46 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 5.258 -9.085 -10.568 14.895 hybrid contribution 0.522 0.483 -0.764 1.044 sum 5.780 -8.603 -11.332 15.357 Atomic orbital electron populations 1.70071 1.05427 1.26905 1.44837 1.25013 0.94762 0.99034 0.94387 0.86721 0.80070 0.83835 0.78365 1.20477 1.21209 1.19578 1.20646 0.92818 0.88709 1.55418 0.91369 1.17903 0.92785 0.98040 0.87698 0.92622 1.21023 0.88943 0.71941 0.83404 1.90524 1.16772 1.50078 1.85078 1.47799 1.06447 1.75139 1.05447 1.21759 0.81672 0.96349 1.00209 1.22160 0.98688 1.01415 0.94363 1.19658 0.95663 0.94715 0.91472 1.24469 0.96039 0.91164 0.92416 1.70462 1.20718 1.28038 1.07831 1.26076 0.97056 0.83195 0.98166 1.48195 1.49542 1.10710 1.12364 0.71561 1.78074 1.21733 1.09867 1.03954 1.21944 0.93636 1.00823 0.99438 1.21274 0.96008 0.96975 0.86228 1.19829 0.94561 0.92178 0.94942 1.20975 0.95969 0.98853 0.96015 1.20818 1.00591 1.00411 0.94488 1.20765 0.99652 0.97837 0.98099 1.20982 0.98267 0.99025 0.98373 1.21141 0.98472 0.97228 0.91391 0.92528 0.92418 0.87086 0.91132 0.91379 0.88493 0.76396 0.91095 0.91618 0.89351 0.92738 0.87543 0.88174 0.88287 0.88110 0.85419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.72 10.89 55.43 0.60 -22.12 16 2 C 0.08 1.89 3.99 -17.82 -0.07 1.81 16 3 Si 0.88 19.55 29.54 -169.99 -5.02 14.53 16 4 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 5 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 7 C -0.54 -12.69 4.97 -34.44 -0.17 -12.86 16 8 H 0.07 1.55 7.64 -52.48 -0.40 1.14 16 9 C 0.06 1.32 1.99 -94.07 -0.19 1.13 16 10 H 0.06 1.20 7.70 -51.93 -0.40 0.80 16 11 C 0.56 13.11 5.40 -10.99 -0.06 13.05 16 12 O -0.55 -14.61 13.37 5.55 0.07 -14.54 16 13 N -0.61 -12.26 2.97 -172.48 -0.51 -12.77 16 14 C 0.12 2.13 5.62 -3.48 -0.02 2.11 16 15 C -0.13 -1.84 5.36 -26.38 -0.14 -1.98 16 16 C 0.01 0.09 2.62 -91.73 -0.24 -0.15 16 17 C 0.24 3.35 6.65 -156.86 -1.04 2.31 16 18 N -0.54 -6.90 11.19 -11.98 -0.13 -7.04 16 19 C 0.25 2.11 13.13 -90.66 -1.19 0.92 16 20 N -0.49 -4.26 7.45 29.53 0.22 -4.04 16 21 H 0.44 2.08 8.96 -182.32 -1.63 0.44 16 22 N -0.31 -4.11 12.80 32.42 0.41 -3.69 16 23 C -0.12 -1.76 5.34 -26.59 -0.14 -1.90 16 24 C 0.12 2.11 6.43 -3.69 -0.02 2.09 16 25 C -0.01 -0.34 4.52 -104.62 -0.47 -0.81 16 26 C -0.10 -2.29 8.21 -39.58 -0.33 -2.62 16 27 C -0.14 -3.02 10.05 -39.58 -0.40 -3.42 16 28 C -0.15 -2.92 10.05 -39.58 -0.40 -3.31 16 29 C -0.15 -3.13 10.05 -39.59 -0.40 -3.52 16 30 C -0.06 -1.50 8.20 -39.59 -0.32 -1.83 16 31 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 32 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 33 H 0.11 2.01 4.84 -51.93 -0.25 1.76 16 34 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.10 1.35 8.14 -51.93 -0.42 0.93 16 37 H 0.22 0.62 8.06 -52.48 -0.42 0.20 16 38 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 39 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.09 1.73 7.00 -51.93 -0.36 1.36 16 41 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 42 H 0.11 2.44 7.01 -52.48 -0.37 2.07 16 43 H 0.10 1.81 8.06 -52.49 -0.42 1.39 16 44 H 0.10 1.68 8.06 -52.48 -0.42 1.26 16 45 H 0.10 1.87 8.06 -52.48 -0.42 1.44 16 46 H 0.13 3.06 6.02 -52.49 -0.32 2.74 16 LS Contribution 368.79 15.07 5.56 5.56 Total: -1.00 -32.86 368.79 -11.92 -44.78 By element: Atomic # 1 Polarization: 15.84 SS G_CDS: -7.52 Total: 8.32 kcal Atomic # 6 Polarization: -3.37 SS G_CDS: -5.60 Total: -8.98 kcal Atomic # 7 Polarization: -50.26 SS G_CDS: 0.59 Total: -49.67 kcal Atomic # 8 Polarization: -14.61 SS G_CDS: 0.07 Total: -14.54 kcal Atomic # 14 Polarization: 19.55 SS G_CDS: -5.02 Total: 14.53 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.86 -11.92 -44.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362999736.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.866 kcal (2) G-P(sol) polarization free energy of solvation -32.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.778 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.16 seconds