Wall clock time and date at job start Sat Apr 11 2020 06:05:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86810 * 119.99761 * 2 1 4 4 H 1.48498 * 109.46750 * 270.00083 * 3 2 1 5 5 H 1.48497 * 109.46959 * 29.99935 * 3 2 1 6 6 H 1.48495 * 109.46869 * 150.00248 * 3 2 1 7 7 C 1.37876 * 120.00136 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99815 * 181.99058 * 7 2 1 9 9 C 1.50696 * 120.00174 * 1.98632 * 7 2 1 10 10 H 1.09000 * 109.47401 * 175.34156 * 9 7 2 11 11 C 1.50700 * 109.46795 * 55.34004 * 9 7 2 12 12 O 1.21285 * 120.00130 * 239.99585 * 11 9 7 13 13 N 1.34776 * 120.00218 * 60.00691 * 11 9 7 14 14 C 1.46926 * 120.62480 * 359.71064 * 13 11 9 15 15 C 1.53627 * 108.54019 * 126.37582 * 14 13 11 16 16 C 1.53042 * 109.24003 * 54.85395 * 15 14 13 17 17 C 1.50706 * 109.45887 * 178.48904 * 16 15 14 18 18 N 1.33231 * 125.52886 * 240.06908 * 17 16 15 19 19 C 1.30835 * 109.82674 * 179.97438 * 18 17 16 20 20 N 1.34420 * 108.08021 * 0.02562 * 19 18 17 21 21 H 0.97008 * 126.82417 * 179.97438 * 20 19 18 22 22 N 1.30712 * 125.52011 * 59.76417 * 17 16 15 23 23 C 1.53036 * 109.53887 * 298.50986 * 16 15 14 24 24 C 1.46920 * 120.63257 * 180.02562 * 13 11 9 25 25 C 1.50707 * 109.47084 * 295.34546 * 9 7 2 26 26 C 1.38233 * 119.99815 * 167.23754 * 25 9 7 27 27 C 1.38236 * 119.99920 * 179.97438 * 26 25 9 28 28 C 1.38238 * 119.99764 * 359.97438 * 27 26 25 29 29 C 1.38234 * 120.00016 * 0.07418 * 28 27 26 30 30 C 1.38229 * 120.00232 * 359.88476 * 29 28 27 31 31 H 0.97003 * 120.00145 * 359.97438 * 1 2 3 32 32 H 1.09003 * 109.58641 * 246.20133 * 14 13 11 33 33 H 1.08996 * 109.58872 * 6.63203 * 14 13 11 34 34 H 1.09001 * 109.63261 * 294.86204 * 15 14 13 35 35 H 1.08996 * 109.46016 * 174.73626 * 15 14 13 36 36 H 1.09000 * 109.46411 * 58.53563 * 16 15 14 37 37 H 1.08005 * 125.95898 * 179.97438 * 19 18 17 38 38 H 1.08993 * 109.50065 * 301.41123 * 23 16 15 39 39 H 1.09006 * 109.52344 * 181.33728 * 23 16 15 40 40 H 1.09001 * 109.58569 * 353.36851 * 24 13 11 41 41 H 1.08999 * 109.59169 * 113.64872 * 24 13 11 42 42 H 1.08004 * 120.00579 * 359.97331 * 26 25 9 43 43 H 1.08001 * 120.00197 * 179.72207 * 27 26 25 44 44 H 1.08003 * 119.99522 * 179.97438 * 28 27 26 45 45 H 1.08003 * 119.99811 * 179.97438 * 29 28 27 46 46 H 1.07998 * 120.00441 * 180.11249 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6179 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0841 -1.1943 0.0320 9 6 1.2519 -2.4987 -0.0464 10 1 1.9596 -3.3241 -0.1233 11 6 0.3365 -2.5087 -1.2434 12 8 -0.8607 -2.6288 -1.0904 13 7 0.8481 -2.3843 -2.4841 14 6 2.2955 -2.2319 -2.6850 15 6 2.7670 -3.3068 -3.6762 16 6 1.9404 -3.2061 -4.9602 17 6 2.4237 -4.2343 -5.9504 18 7 2.9144 -3.9726 -7.1611 19 6 3.2397 -5.0899 -7.7591 20 7 2.9572 -6.1064 -6.9263 21 1 3.0910 -7.0520 -7.0966 22 7 2.4347 -5.5272 -5.7583 23 6 0.4655 -3.4598 -4.6407 24 6 -0.0316 -2.3917 -3.6608 25 6 0.4358 -2.6523 1.2113 26 6 -0.5371 -3.6313 1.2887 27 6 -1.2853 -3.7725 2.4425 28 6 -1.0602 -2.9350 3.5190 29 6 -0.0880 -1.9554 3.4412 30 6 0.6607 -1.8147 2.2878 31 1 -0.4850 0.8401 0.0004 32 1 2.5062 -1.2414 -3.0885 33 1 2.8119 -2.3586 -1.7335 34 1 2.6351 -4.2948 -3.2351 35 1 3.8203 -3.1498 -3.9083 36 1 2.0533 -2.2097 -5.3876 37 1 3.6609 -5.1798 -8.7496 38 1 0.3551 -4.4463 -4.1907 39 1 -0.1198 -3.4114 -5.5591 40 1 -1.0512 -2.6238 -3.3533 41 1 -0.0085 -1.4132 -4.1405 42 1 -0.7127 -4.2859 0.4478 43 1 -2.0484 -4.5344 2.5013 44 1 -1.6451 -3.0451 4.4202 45 1 0.0875 -1.3008 4.2821 46 1 1.4215 -1.0505 2.2276 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362999736.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:58 Heat of formation + Delta-G solvation = 60.720368 kcal Electronic energy + Delta-G solvation = -30049.779117 eV Core-core repulsion = 26133.218467 eV Total energy + Delta-G solvation = -3916.560650 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -43.05871 -41.02611 -39.54900 -38.02745 -35.57079 -34.57167 -33.01627 -32.71960 -31.88369 -31.46421 -31.31796 -29.02167 -26.83177 -25.52830 -24.10547 -23.84103 -22.92886 -22.56429 -21.74487 -20.81213 -19.67350 -19.23726 -18.72549 -17.31865 -17.13685 -16.77891 -16.48384 -16.26510 -15.89464 -15.82337 -15.50762 -15.31915 -15.20946 -14.85477 -14.53453 -14.22066 -14.04878 -13.83049 -13.72165 -13.35074 -13.06621 -13.04694 -13.00588 -12.72743 -12.51105 -12.41784 -12.18660 -12.04690 -11.77506 -11.73804 -11.54142 -11.37421 -11.12605 -11.00794 -10.99468 -10.58446 -10.55667 -10.07890 -9.35695 -9.20369 -9.06479 -8.00930 -6.18267 0.72125 0.90135 0.95640 1.44996 1.50065 1.56437 1.88502 1.93821 2.34755 2.47333 2.62574 3.13862 3.26396 3.36232 3.63797 3.92748 4.02298 4.07055 4.21851 4.34861 4.37117 4.41211 4.44977 4.49781 4.54787 4.65783 4.73663 4.81561 4.90512 4.93703 4.99073 5.03933 5.11592 5.15441 5.17747 5.19621 5.31558 5.38269 5.48102 5.49322 5.57266 5.75499 5.90945 5.96112 6.01278 6.09220 6.32143 6.45766 6.55820 6.78036 7.01852 7.17186 7.47804 7.93770 8.98384 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014190 B = 0.003517 C = 0.003056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1972.682819 B = 7959.355934 C = 9160.935418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.042 3.958 3 Si 0.935 3.065 4 H -0.278 1.278 5 H -0.298 1.298 6 H -0.259 1.259 7 C -0.525 4.525 8 H 0.076 0.924 9 C 0.050 3.950 10 H 0.064 0.936 11 C 0.551 3.449 12 O -0.588 6.588 13 N -0.614 5.614 14 C 0.123 3.877 15 C -0.111 4.111 16 C 0.011 3.989 17 C 0.229 3.771 18 N -0.579 5.579 19 C 0.274 3.726 20 N -0.478 5.478 21 H 0.457 0.543 22 N -0.342 5.342 23 C -0.102 4.102 24 C 0.119 3.881 25 C -0.036 4.036 26 C -0.119 4.119 27 C -0.148 4.148 28 C -0.142 4.142 29 C -0.152 4.152 30 C -0.085 4.085 31 H 0.254 0.746 32 H 0.060 0.940 33 H 0.101 0.899 34 H 0.061 0.939 35 H 0.085 0.915 36 H 0.100 0.900 37 H 0.274 0.726 38 H 0.057 0.943 39 H 0.081 0.919 40 H 0.064 0.936 41 H 0.061 0.939 42 H 0.095 0.905 43 H 0.128 0.872 44 H 0.137 0.863 45 H 0.127 0.873 46 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.724 -9.918 -12.265 17.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.162 4.162 3 Si 0.762 3.238 4 H -0.204 1.204 5 H -0.225 1.225 6 H -0.183 1.183 7 C -0.562 4.562 8 H 0.094 0.906 9 C 0.029 3.971 10 H 0.081 0.919 11 C 0.343 3.657 12 O -0.468 6.468 13 N -0.348 5.348 14 C 0.000 4.000 15 C -0.150 4.150 16 C -0.010 4.010 17 C -0.053 4.053 18 N -0.308 5.308 19 C -0.024 4.024 20 N -0.198 5.198 21 H 0.305 0.695 22 N -0.172 5.172 23 C -0.141 4.141 24 C -0.004 4.004 25 C -0.037 4.037 26 C -0.137 4.137 27 C -0.166 4.166 28 C -0.160 4.160 29 C -0.170 4.170 30 C -0.103 4.103 31 H 0.063 0.937 32 H 0.078 0.922 33 H 0.119 0.881 34 H 0.079 0.921 35 H 0.104 0.896 36 H 0.118 0.882 37 H 0.289 0.711 38 H 0.076 0.924 39 H 0.099 0.901 40 H 0.083 0.917 41 H 0.079 0.921 42 H 0.114 0.886 43 H 0.146 0.854 44 H 0.155 0.845 45 H 0.145 0.855 46 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 6.716 -9.856 -11.669 16.686 hybrid contribution 0.126 0.598 -0.494 0.786 sum 6.843 -9.258 -12.163 16.747 Atomic orbital electron populations 1.70250 1.06908 1.26535 1.47247 1.25519 0.94987 1.01458 0.94273 0.85891 0.79254 0.80516 0.78147 1.20357 1.22457 1.18318 1.20826 0.93069 0.88780 1.53558 0.90555 1.17993 0.93008 0.98220 0.87900 0.91853 1.21081 0.88425 0.71704 0.84511 1.90485 1.18250 1.52162 1.85873 1.47870 1.07905 1.73870 1.05107 1.21825 0.79952 0.97543 1.00635 1.21974 0.99668 0.99602 0.93800 1.19487 0.94600 0.95394 0.91528 1.24183 0.97073 0.91094 0.92986 1.70424 1.22304 1.30322 1.07781 1.27055 0.94531 0.81660 0.99132 1.48114 1.48608 1.11889 1.11159 0.69458 1.77971 1.22887 1.09924 1.06386 1.21742 0.94759 0.98714 0.98871 1.21339 0.94667 0.98385 0.86048 1.19969 0.95426 0.93003 0.95298 1.21023 0.96802 0.99094 0.96793 1.21179 1.00480 1.01046 0.93864 1.21170 0.99142 0.96582 0.99088 1.21316 0.97819 0.99539 0.98308 1.21135 0.99312 0.97352 0.92503 0.93688 0.92211 0.88099 0.92058 0.89608 0.88222 0.71105 0.92392 0.90083 0.91728 0.92105 0.88633 0.85446 0.84473 0.85543 0.86762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -48.72 10.89 21.45 0.23 -48.49 16 2 C 0.04 2.10 3.99 84.65 0.34 2.44 16 3 Si 0.94 40.43 29.54 68.60 2.03 42.46 16 4 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 5 H -0.30 -13.40 7.11 99.48 0.71 -12.69 16 6 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 7 C -0.52 -25.06 4.97 25.60 0.13 -24.93 16 8 H 0.08 3.45 7.64 -2.91 -0.02 3.43 16 9 C 0.05 2.39 1.99 -13.03 -0.03 2.36 16 10 H 0.06 2.83 7.70 -2.39 -0.02 2.81 16 11 C 0.55 27.05 5.40 87.66 0.47 27.53 16 12 O -0.59 -32.89 13.37 -3.05 -0.04 -32.93 16 13 N -0.61 -25.29 2.97 -817.99 -2.43 -27.71 16 14 C 0.12 4.27 5.62 86.51 0.49 4.76 16 15 C -0.11 -3.17 5.36 30.82 0.17 -3.00 16 16 C 0.01 0.30 2.62 -11.51 -0.03 0.27 16 17 C 0.23 6.04 6.65 138.64 0.92 6.96 16 18 N -0.58 -13.40 11.19 -191.80 -2.15 -15.55 16 19 C 0.27 3.59 13.13 180.36 2.37 5.96 16 20 N -0.48 -7.04 7.45 -60.49 -0.45 -7.49 16 21 H 0.46 3.01 8.96 -213.08 -1.91 1.10 16 22 N -0.34 -8.65 12.80 -51.33 -0.66 -9.31 16 23 C -0.10 -3.02 5.34 30.69 0.16 -2.86 16 24 C 0.12 4.35 6.43 86.38 0.56 4.91 16 25 C -0.04 -1.77 4.52 -19.86 -0.09 -1.86 16 26 C -0.12 -5.58 8.21 22.27 0.18 -5.40 16 27 C -0.15 -6.03 10.05 22.27 0.22 -5.80 16 28 C -0.14 -5.41 10.05 22.27 0.22 -5.19 16 29 C -0.15 -6.24 10.05 22.27 0.22 -6.02 16 30 C -0.09 -4.02 8.20 22.27 0.18 -3.83 16 31 H 0.25 14.15 8.31 -92.71 -0.77 13.38 16 32 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 33 H 0.10 3.69 4.84 -2.39 -0.01 3.68 16 34 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 35 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 36 H 0.10 2.69 8.14 -2.39 -0.02 2.67 16 37 H 0.27 0.13 8.06 -2.91 -0.02 0.11 16 38 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 39 H 0.08 2.16 8.14 -2.38 -0.02 2.14 16 40 H 0.06 2.67 7.00 -2.39 -0.02 2.65 16 41 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 42 H 0.10 4.58 7.01 -2.91 -0.02 4.56 16 43 H 0.13 4.39 8.06 -2.91 -0.02 4.37 16 44 H 0.14 4.15 8.06 -2.91 -0.02 4.13 16 45 H 0.13 4.43 8.06 -2.91 -0.02 4.41 16 46 H 0.11 5.59 6.02 -2.91 -0.02 5.57 16 Total: -1.00 -73.59 368.79 2.13 -71.46 By element: Atomic # 1 Polarization: 32.15 SS G_CDS: -0.90 Total: 31.25 kcal Atomic # 6 Polarization: -10.18 SS G_CDS: 6.49 Total: -3.69 kcal Atomic # 7 Polarization: -103.10 SS G_CDS: -5.45 Total: -108.54 kcal Atomic # 8 Polarization: -32.89 SS G_CDS: -0.04 Total: -32.93 kcal Atomic # 14 Polarization: 40.43 SS G_CDS: 2.03 Total: 42.46 kcal Total: -73.59 2.13 -71.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362999736.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.176 kcal (2) G-P(sol) polarization free energy of solvation -73.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.455 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds