Wall clock time and date at job start Sat Apr 11 2020 06:06:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86804 * 119.99868 * 2 1 4 4 H 1.48501 * 109.47377 * 264.80972 * 3 2 1 5 5 H 1.48497 * 109.46961 * 24.81370 * 3 2 1 6 6 H 1.48506 * 109.46936 * 144.81351 * 3 2 1 7 7 C 1.37877 * 120.00459 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99451 * 4.08574 * 7 2 1 9 9 C 1.50696 * 120.00620 * 184.08484 * 7 2 1 10 10 H 1.09007 * 109.46737 * 35.09058 * 9 7 2 11 11 C 1.50699 * 109.47588 * 155.09119 * 9 7 2 12 12 O 1.21276 * 120.00265 * 120.00297 * 11 9 7 13 13 N 1.34775 * 119.99903 * 300.00722 * 11 9 7 14 14 C 1.46925 * 120.63294 * 179.97438 * 13 11 9 15 15 C 1.53193 * 108.89565 * 233.56023 * 14 13 11 16 16 C 1.53073 * 109.29311 * 305.57373 * 15 14 13 17 17 C 1.50694 * 109.45541 * 181.24344 * 16 15 14 18 18 N 1.33237 * 125.53161 * 119.78640 * 17 16 15 19 19 C 1.30827 * 109.83563 * 180.02562 * 18 17 16 20 20 N 1.34433 * 108.07364 * 0.02562 * 19 18 17 21 21 H 0.97002 * 126.82385 * 180.02562 * 20 19 18 22 22 N 1.30722 * 125.52499 * 299.48795 * 17 16 15 23 23 C 1.53040 * 109.65626 * 61.15245 * 16 15 14 24 24 C 1.46926 * 120.63216 * 0.02562 * 13 11 9 25 25 C 1.50697 * 109.47481 * 275.09565 * 9 7 2 26 26 C 1.38238 * 119.99873 * 306.17780 * 25 9 7 27 27 C 1.38235 * 119.99993 * 179.80829 * 26 25 9 28 28 C 1.38236 * 119.99736 * 0.40024 * 27 26 25 29 29 C 1.38233 * 120.00371 * 359.85162 * 28 27 26 30 30 C 1.38238 * 119.99959 * 359.95815 * 29 28 27 31 31 H 0.96999 * 120.00600 * 0.02562 * 1 2 3 32 32 H 1.09001 * 109.58633 * 353.41518 * 14 13 11 33 33 H 1.09001 * 109.59043 * 113.69435 * 14 13 11 34 34 H 1.09002 * 109.49575 * 65.38183 * 15 14 13 35 35 H 1.09002 * 109.49948 * 185.48366 * 15 14 13 36 36 H 1.08999 * 109.33689 * 301.14101 * 16 15 14 37 37 H 1.07999 * 125.96582 * 179.97438 * 19 18 17 38 38 H 1.09002 * 109.49881 * 178.74689 * 23 16 15 39 39 H 1.08997 * 109.49760 * 58.65187 * 23 16 15 40 40 H 1.09002 * 109.58659 * 246.15756 * 24 13 11 41 41 H 1.08996 * 109.58759 * 6.44134 * 24 13 11 42 42 H 1.07999 * 119.99557 * 359.97438 * 26 25 9 43 43 H 1.07993 * 119.99850 * 180.22785 * 27 26 25 44 44 H 1.08003 * 119.99907 * 179.83544 * 28 27 26 45 45 H 1.08004 * 120.00206 * 179.97438 * 29 28 27 46 46 H 1.08002 * 120.00120 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.6063 1.9832 -1.3943 5 1 1.3960 2.6818 0.5876 6 1 3.4875 1.4743 0.8068 7 6 2.0045 -1.1940 -0.0005 8 1 1.4666 -2.1281 -0.0676 9 6 3.5086 -1.1957 0.0924 10 1 3.8339 -0.3771 0.7345 11 6 3.9746 -2.5057 0.6738 12 8 4.7119 -3.2251 0.0338 13 7 3.5718 -2.8778 1.9049 14 6 4.0171 -4.1521 2.4850 15 6 2.7880 -4.9515 2.9289 16 6 1.9384 -4.0925 3.8689 17 6 0.7440 -4.8862 4.3320 18 7 0.4590 -5.1887 5.5979 19 6 -0.6462 -5.8869 5.6494 20 7 -1.0970 -6.0475 4.3931 21 1 -1.8972 -6.5222 4.1188 22 7 -0.1833 -5.3849 3.5573 23 6 1.4626 -2.8388 3.1314 24 6 2.6781 -2.0173 2.6921 25 6 4.0972 -1.0192 -1.2836 26 6 3.7230 -1.8669 -2.3094 27 6 4.2599 -1.7024 -3.5725 28 6 5.1773 -0.6955 -3.8079 29 6 5.5555 0.1489 -2.7808 30 6 5.0156 -0.0130 -1.5186 31 1 -0.4851 0.8400 -0.0004 32 1 4.5718 -4.7197 1.7378 33 1 4.6572 -3.9580 3.3457 34 1 2.1967 -5.2249 2.0549 35 1 3.1093 -5.8543 3.4484 36 1 2.5374 -3.8009 4.7316 37 1 -1.1143 -6.2684 6.5448 38 1 0.8397 -2.2401 3.7960 39 1 0.8845 -3.1299 2.2544 40 1 3.2066 -1.6487 3.5713 41 1 2.3513 -1.1750 2.0824 42 1 3.0091 -2.6559 -2.1245 43 1 3.9648 -2.3624 -4.3748 44 1 5.5989 -0.5687 -4.7941 45 1 6.2726 0.9353 -2.9646 46 1 5.3114 0.6464 -0.7160 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362999738.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:05 Heat of formation + Delta-G solvation = 76.111394 kcal Electronic energy + Delta-G solvation = -29972.800771 eV Core-core repulsion = 26056.907527 eV Total energy + Delta-G solvation = -3915.893245 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.98 seconds Orbital eigenvalues (eV) -42.12217 -39.71025 -38.27264 -36.78456 -33.92562 -33.36873 -32.01344 -31.51536 -30.66485 -30.37966 -30.09314 -27.74730 -25.55664 -23.56338 -22.87353 -22.80651 -21.83571 -21.42575 -20.49774 -19.59014 -18.39620 -18.16120 -17.09475 -16.35316 -16.03334 -15.45651 -15.13537 -15.05065 -14.67644 -14.34778 -14.33837 -14.12000 -13.81210 -13.33602 -13.26102 -12.88012 -12.67624 -12.60862 -12.30243 -12.10449 -12.05038 -11.81085 -11.72781 -11.14293 -11.12594 -10.90611 -10.79302 -10.58719 -10.45036 -10.26396 -10.21059 -10.02855 -9.99547 -9.88970 -9.53743 -9.48202 -8.90507 -8.61744 -8.09450 -7.95811 -7.77155 -6.28890 -4.30271 1.61359 2.18666 2.25259 2.65220 2.90466 3.18524 3.26153 3.32097 3.57657 3.78676 4.07504 4.24217 4.65563 4.67788 4.84497 5.00828 5.12307 5.23115 5.43734 5.57424 5.59906 5.62599 5.66452 5.74473 5.83807 5.91306 5.98200 6.04847 6.09337 6.13848 6.26774 6.31336 6.35723 6.36714 6.43211 6.48476 6.52190 6.73297 6.77469 6.86875 6.89715 6.99262 7.19834 7.26909 7.29552 7.33287 7.63464 7.83734 8.08551 8.15579 8.26679 8.71893 9.11566 9.27482 10.80963 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014900 B = 0.003595 C = 0.003235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1878.802870 B = 7787.119918 C = 8652.425449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.087 3.913 3 Si 0.859 3.141 4 H -0.265 1.265 5 H -0.287 1.287 6 H -0.261 1.261 7 C -0.505 4.505 8 H 0.084 0.916 9 C 0.020 3.980 10 H 0.069 0.931 11 C 0.541 3.459 12 O -0.562 6.562 13 N -0.607 5.607 14 C 0.114 3.886 15 C -0.120 4.120 16 C 0.005 3.995 17 C 0.240 3.760 18 N -0.544 5.544 19 C 0.252 3.748 20 N -0.489 5.489 21 H 0.440 0.560 22 N -0.300 5.300 23 C -0.114 4.114 24 C 0.101 3.899 25 C -0.030 4.030 26 C -0.070 4.070 27 C -0.130 4.130 28 C -0.143 4.143 29 C -0.130 4.130 30 C -0.138 4.138 31 H 0.268 0.732 32 H 0.090 0.910 33 H 0.060 0.940 34 H 0.074 0.926 35 H 0.067 0.933 36 H 0.094 0.906 37 H 0.219 0.781 38 H 0.069 0.931 39 H 0.084 0.916 40 H 0.050 0.950 41 H 0.133 0.867 42 H 0.118 0.882 43 H 0.110 0.890 44 H 0.108 0.892 45 H 0.109 0.891 46 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.916 -7.405 8.818 11.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.118 4.118 3 Si 0.686 3.314 4 H -0.190 1.190 5 H -0.213 1.213 6 H -0.186 1.186 7 C -0.542 4.542 8 H 0.102 0.898 9 C -0.002 4.002 10 H 0.087 0.913 11 C 0.331 3.669 12 O -0.441 6.441 13 N -0.340 5.340 14 C -0.010 4.010 15 C -0.160 4.160 16 C -0.016 4.016 17 C -0.043 4.043 18 N -0.272 5.272 19 C -0.047 4.047 20 N -0.207 5.207 21 H 0.285 0.715 22 N -0.128 5.128 23 C -0.154 4.154 24 C -0.022 4.022 25 C -0.031 4.031 26 C -0.088 4.088 27 C -0.148 4.148 28 C -0.161 4.161 29 C -0.148 4.148 30 C -0.156 4.156 31 H 0.079 0.921 32 H 0.108 0.892 33 H 0.078 0.922 34 H 0.093 0.907 35 H 0.086 0.914 36 H 0.112 0.888 37 H 0.235 0.765 38 H 0.087 0.913 39 H 0.103 0.897 40 H 0.068 0.932 41 H 0.151 0.849 42 H 0.136 0.864 43 H 0.129 0.871 44 H 0.126 0.874 45 H 0.127 0.873 46 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 1.349 -7.463 8.003 11.026 hybrid contribution -0.653 0.458 0.166 0.815 sum 0.696 -7.005 8.169 10.784 Atomic orbital electron populations 1.69854 1.06070 1.27428 1.48054 1.24901 0.94656 0.98536 0.93703 0.87126 0.80270 0.84067 0.79970 1.19028 1.21263 1.18578 1.20477 0.86060 0.95348 1.52326 0.89754 1.18591 0.98357 0.92601 0.90635 0.91298 1.20973 0.77921 0.88423 0.79537 1.90580 1.37847 1.55854 1.59808 1.47926 1.49073 1.20130 1.16899 1.21421 0.95334 0.85817 0.98394 1.21918 0.97024 0.97610 0.99402 1.19681 0.89408 0.93860 0.98657 1.24377 0.96470 0.97010 0.86454 1.70426 1.15547 1.19072 1.22166 1.26041 0.92440 0.95978 0.90222 1.48207 1.23493 1.43266 1.05725 0.71532 1.78151 1.02821 1.15263 1.16608 1.21821 0.98566 0.94295 1.00687 1.22084 0.89033 0.95316 0.95727 1.20103 0.92492 0.93496 0.96981 1.20855 0.97881 0.98289 0.91786 1.21037 0.98232 0.98530 0.97031 1.20859 0.99783 0.97152 0.98296 1.20877 1.00735 0.99636 0.93522 1.20999 0.98236 0.99531 0.96835 0.92144 0.89180 0.92188 0.90695 0.91409 0.88802 0.76452 0.91256 0.89731 0.93181 0.84929 0.86402 0.87149 0.87370 0.87314 0.87380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.09 13.96 55.43 0.77 -23.32 16 2 C 0.09 2.23 5.25 -17.82 -0.09 2.14 16 3 Si 0.86 19.72 25.95 -169.99 -4.41 15.31 16 4 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.26 -5.57 6.14 56.52 0.35 -5.22 16 7 C -0.50 -12.47 5.68 -34.44 -0.20 -12.67 16 8 H 0.08 2.33 8.05 -52.48 -0.42 1.91 16 9 C 0.02 0.44 1.10 -94.08 -0.10 0.34 16 10 H 0.07 1.52 5.25 -51.92 -0.27 1.25 16 11 C 0.54 11.80 6.98 -10.99 -0.08 11.72 16 12 O -0.56 -13.38 14.84 5.56 0.08 -13.30 16 13 N -0.61 -11.30 2.98 -172.80 -0.51 -11.81 16 14 C 0.11 1.78 6.43 -3.71 -0.02 1.76 16 15 C -0.12 -1.76 5.35 -26.59 -0.14 -1.90 16 16 C 0.01 0.08 2.61 -91.72 -0.24 -0.16 16 17 C 0.24 3.61 6.65 -156.85 -1.04 2.57 16 18 N -0.54 -7.38 11.19 -11.98 -0.13 -7.52 16 19 C 0.25 2.38 13.13 -90.65 -1.19 1.19 16 20 N -0.49 -5.03 7.45 29.53 0.22 -4.81 16 21 H 0.44 2.82 8.96 -182.34 -1.63 1.18 16 22 N -0.30 -4.58 12.80 32.42 0.41 -4.16 16 23 C -0.11 -1.93 5.34 -26.64 -0.14 -2.07 16 24 C 0.10 1.76 5.88 -3.74 -0.02 1.74 16 25 C -0.03 -0.67 3.59 -104.62 -0.38 -1.04 16 26 C -0.07 -1.55 8.31 -39.58 -0.33 -1.88 16 27 C -0.13 -2.51 10.05 -39.58 -0.40 -2.91 16 28 C -0.14 -2.56 10.05 -39.58 -0.40 -2.96 16 29 C -0.13 -2.39 10.05 -39.58 -0.40 -2.79 16 30 C -0.14 -2.85 8.57 -39.58 -0.34 -3.19 16 31 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 32 H 0.09 1.52 7.01 -51.93 -0.36 1.15 16 33 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 35 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 37 H 0.22 0.83 8.06 -52.49 -0.42 0.41 16 38 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 39 H 0.08 1.69 8.14 -51.93 -0.42 1.27 16 40 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.13 2.70 4.39 -51.93 -0.23 2.47 16 42 H 0.12 2.70 7.89 -52.49 -0.41 2.29 16 43 H 0.11 1.82 8.06 -52.49 -0.42 1.40 16 44 H 0.11 1.59 8.06 -52.48 -0.42 1.17 16 45 H 0.11 1.67 8.06 -52.48 -0.42 1.24 16 46 H 0.11 2.08 7.94 -52.49 -0.42 1.66 16 LS Contribution 371.54 15.07 5.60 5.60 Total: -1.00 -32.71 371.54 -11.07 -43.79 By element: Atomic # 1 Polarization: 17.94 SS G_CDS: -7.59 Total: 10.35 kcal Atomic # 6 Polarization: -4.60 SS G_CDS: -5.51 Total: -10.11 kcal Atomic # 7 Polarization: -52.39 SS G_CDS: 0.76 Total: -51.63 kcal Atomic # 8 Polarization: -13.38 SS G_CDS: 0.08 Total: -13.30 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -4.41 Total: 15.31 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.71 -11.07 -43.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362999738.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.897 kcal (2) G-P(sol) polarization free energy of solvation -32.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.785 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.99 seconds