Wall clock time and date at job start Sat Apr 11 2020 06:06:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86804 * 119.99868 * 2 1 4 4 H 1.48501 * 109.47377 * 264.80972 * 3 2 1 5 5 H 1.48497 * 109.46961 * 24.81370 * 3 2 1 6 6 H 1.48506 * 109.46936 * 144.81351 * 3 2 1 7 7 C 1.37877 * 120.00459 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99451 * 4.08574 * 7 2 1 9 9 C 1.50696 * 120.00620 * 184.08484 * 7 2 1 10 10 H 1.09007 * 109.46737 * 35.09058 * 9 7 2 11 11 C 1.50699 * 109.47588 * 155.09119 * 9 7 2 12 12 O 1.21276 * 120.00265 * 120.00297 * 11 9 7 13 13 N 1.34775 * 119.99903 * 300.00722 * 11 9 7 14 14 C 1.46925 * 120.63294 * 179.97438 * 13 11 9 15 15 C 1.53193 * 108.89565 * 233.56023 * 14 13 11 16 16 C 1.53073 * 109.29311 * 305.57373 * 15 14 13 17 17 C 1.50694 * 109.45541 * 181.24344 * 16 15 14 18 18 N 1.33237 * 125.53161 * 119.78640 * 17 16 15 19 19 C 1.30827 * 109.83563 * 180.02562 * 18 17 16 20 20 N 1.34433 * 108.07364 * 0.02562 * 19 18 17 21 21 H 0.97002 * 126.82385 * 180.02562 * 20 19 18 22 22 N 1.30722 * 125.52499 * 299.48795 * 17 16 15 23 23 C 1.53040 * 109.65626 * 61.15245 * 16 15 14 24 24 C 1.46926 * 120.63216 * 0.02562 * 13 11 9 25 25 C 1.50697 * 109.47481 * 275.09565 * 9 7 2 26 26 C 1.38238 * 119.99873 * 306.17780 * 25 9 7 27 27 C 1.38235 * 119.99993 * 179.80829 * 26 25 9 28 28 C 1.38236 * 119.99736 * 0.40024 * 27 26 25 29 29 C 1.38233 * 120.00371 * 359.85162 * 28 27 26 30 30 C 1.38238 * 119.99959 * 359.95815 * 29 28 27 31 31 H 0.96999 * 120.00600 * 0.02562 * 1 2 3 32 32 H 1.09001 * 109.58633 * 353.41518 * 14 13 11 33 33 H 1.09001 * 109.59043 * 113.69435 * 14 13 11 34 34 H 1.09002 * 109.49575 * 65.38183 * 15 14 13 35 35 H 1.09002 * 109.49948 * 185.48366 * 15 14 13 36 36 H 1.08999 * 109.33689 * 301.14101 * 16 15 14 37 37 H 1.07999 * 125.96582 * 179.97438 * 19 18 17 38 38 H 1.09002 * 109.49881 * 178.74689 * 23 16 15 39 39 H 1.08997 * 109.49760 * 58.65187 * 23 16 15 40 40 H 1.09002 * 109.58659 * 246.15756 * 24 13 11 41 41 H 1.08996 * 109.58759 * 6.44134 * 24 13 11 42 42 H 1.07999 * 119.99557 * 359.97438 * 26 25 9 43 43 H 1.07993 * 119.99850 * 180.22785 * 27 26 25 44 44 H 1.08003 * 119.99907 * 179.83544 * 28 27 26 45 45 H 1.08004 * 120.00206 * 179.97438 * 29 28 27 46 46 H 1.08002 * 120.00120 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.6063 1.9832 -1.3943 5 1 1.3960 2.6818 0.5876 6 1 3.4875 1.4743 0.8068 7 6 2.0045 -1.1940 -0.0005 8 1 1.4666 -2.1281 -0.0676 9 6 3.5086 -1.1957 0.0924 10 1 3.8339 -0.3771 0.7345 11 6 3.9746 -2.5057 0.6738 12 8 4.7119 -3.2251 0.0338 13 7 3.5718 -2.8778 1.9049 14 6 4.0171 -4.1521 2.4850 15 6 2.7880 -4.9515 2.9289 16 6 1.9384 -4.0925 3.8689 17 6 0.7440 -4.8862 4.3320 18 7 0.4590 -5.1887 5.5979 19 6 -0.6462 -5.8869 5.6494 20 7 -1.0970 -6.0475 4.3931 21 1 -1.8972 -6.5222 4.1188 22 7 -0.1833 -5.3849 3.5573 23 6 1.4626 -2.8388 3.1314 24 6 2.6781 -2.0173 2.6921 25 6 4.0972 -1.0192 -1.2836 26 6 3.7230 -1.8669 -2.3094 27 6 4.2599 -1.7024 -3.5725 28 6 5.1773 -0.6955 -3.8079 29 6 5.5555 0.1489 -2.7808 30 6 5.0156 -0.0130 -1.5186 31 1 -0.4851 0.8400 -0.0004 32 1 4.5718 -4.7197 1.7378 33 1 4.6572 -3.9580 3.3457 34 1 2.1967 -5.2249 2.0549 35 1 3.1093 -5.8543 3.4484 36 1 2.5374 -3.8009 4.7316 37 1 -1.1143 -6.2684 6.5448 38 1 0.8397 -2.2401 3.7960 39 1 0.8845 -3.1299 2.2544 40 1 3.2066 -1.6487 3.5713 41 1 2.3513 -1.1750 2.0824 42 1 3.0091 -2.6559 -2.1245 43 1 3.9648 -2.3624 -4.3748 44 1 5.5989 -0.5687 -4.7941 45 1 6.2726 0.9353 -2.9646 46 1 5.3114 0.6464 -0.7160 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362999738.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:03 Heat of formation + Delta-G solvation = 56.313876 kcal Electronic energy + Delta-G solvation = -29973.659256 eV Core-core repulsion = 26056.907527 eV Total energy + Delta-G solvation = -3916.751729 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -43.07085 -41.31323 -39.76338 -38.29377 -35.71073 -34.70342 -33.36750 -33.00545 -32.01286 -31.62777 -31.53395 -29.41340 -26.99259 -25.28398 -24.20470 -23.90455 -23.36752 -22.78234 -21.84168 -20.86110 -19.70314 -19.25952 -19.00893 -18.02011 -17.54301 -16.82314 -16.40976 -16.31687 -16.07281 -15.79880 -15.65535 -15.56075 -15.35181 -14.84633 -14.63497 -14.60328 -14.26153 -14.15905 -13.80709 -13.63865 -13.39086 -13.15644 -13.05359 -12.93973 -12.69812 -12.40957 -12.16952 -12.04843 -11.96818 -11.82231 -11.62623 -11.55226 -11.37305 -11.01858 -11.01200 -10.83128 -10.62110 -10.40366 -9.64289 -9.47780 -9.36031 -8.29991 -6.33411 0.63948 0.70383 0.72226 1.34104 1.42126 1.45047 1.84578 1.88564 1.92250 2.29742 2.32550 3.00041 3.12848 3.15164 3.62404 3.84704 4.02027 4.03849 4.10245 4.18078 4.21486 4.24758 4.33786 4.39073 4.41028 4.41830 4.53783 4.62979 4.78867 4.81544 4.84336 4.86949 4.91625 4.99873 5.13183 5.18267 5.21660 5.31404 5.32286 5.37799 5.42477 5.51495 5.69009 5.73415 5.83901 5.96681 6.23360 6.30164 6.30650 6.56667 6.65147 7.14911 7.25724 7.42704 8.83599 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014900 B = 0.003595 C = 0.003235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1878.802870 B = 7787.119918 C = 8652.425449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.044 3.956 3 Si 0.909 3.091 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.232 1.232 7 C -0.482 4.482 8 H 0.036 0.964 9 C 0.023 3.977 10 H 0.076 0.924 11 C 0.533 3.467 12 O -0.588 6.588 13 N -0.604 5.604 14 C 0.112 3.888 15 C -0.108 4.108 16 C 0.013 3.987 17 C 0.227 3.773 18 N -0.573 5.573 19 C 0.274 3.726 20 N -0.481 5.481 21 H 0.455 0.545 22 N -0.351 5.351 23 C -0.102 4.102 24 C 0.101 3.899 25 C -0.057 4.057 26 C -0.102 4.102 27 C -0.135 4.135 28 C -0.137 4.137 29 C -0.126 4.126 30 C -0.154 4.154 31 H 0.268 0.732 32 H 0.076 0.924 33 H 0.096 0.904 34 H 0.042 0.958 35 H 0.092 0.908 36 H 0.116 0.884 37 H 0.276 0.724 38 H 0.072 0.928 39 H 0.039 0.961 40 H 0.089 0.911 41 H 0.103 0.897 42 H 0.087 0.913 43 H 0.133 0.867 44 H 0.150 0.850 45 H 0.149 0.851 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.864 -6.841 10.232 12.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.157 4.157 3 Si 0.734 3.266 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.156 1.156 7 C -0.520 4.520 8 H 0.055 0.945 9 C 0.002 3.998 10 H 0.094 0.906 11 C 0.324 3.676 12 O -0.470 6.470 13 N -0.336 5.336 14 C -0.010 4.010 15 C -0.147 4.147 16 C -0.008 4.008 17 C -0.056 4.056 18 N -0.302 5.302 19 C -0.024 4.024 20 N -0.200 5.200 21 H 0.304 0.696 22 N -0.180 5.180 23 C -0.142 4.142 24 C -0.021 4.021 25 C -0.058 4.058 26 C -0.120 4.120 27 C -0.153 4.153 28 C -0.154 4.154 29 C -0.144 4.144 30 C -0.172 4.172 31 H 0.078 0.922 32 H 0.094 0.906 33 H 0.114 0.886 34 H 0.061 0.939 35 H 0.110 0.890 36 H 0.134 0.866 37 H 0.292 0.708 38 H 0.091 0.909 39 H 0.058 0.942 40 H 0.107 0.893 41 H 0.121 0.879 42 H 0.106 0.894 43 H 0.151 0.849 44 H 0.168 0.832 45 H 0.166 0.834 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 3.281 -6.931 9.448 12.169 hybrid contribution -1.341 0.124 -0.279 1.376 sum 1.940 -6.807 9.169 11.583 Atomic orbital electron populations 1.69984 1.07756 1.28105 1.50498 1.25496 0.95095 1.01506 0.93573 0.86302 0.80270 0.80151 0.79894 1.19695 1.21123 1.15578 1.20244 0.87440 0.93312 1.50981 0.94540 1.18499 0.96364 0.93346 0.91576 0.90627 1.20921 0.78052 0.88265 0.80409 1.90547 1.39312 1.56415 1.60691 1.48001 1.48304 1.21182 1.16096 1.21634 0.96034 0.84299 0.98996 1.21790 0.96102 0.98432 0.98412 1.19562 0.89871 0.92587 0.98773 1.24303 0.96513 0.97448 0.87298 1.70404 1.17640 1.20861 1.21340 1.27108 0.90799 0.93380 0.91132 1.48125 1.23420 1.42741 1.05720 0.69635 1.78061 1.04244 1.16870 1.18838 1.21618 0.97800 0.95601 0.99150 1.22070 0.89526 0.94328 0.96210 1.20134 0.94245 0.94936 0.96466 1.20818 0.98936 0.98545 0.93719 1.21356 0.98154 0.99451 0.96303 1.21343 0.98348 0.95607 1.00133 1.21372 1.00400 1.00145 0.92451 1.21263 0.98139 0.99163 0.98605 0.92243 0.90583 0.88587 0.93940 0.88966 0.86619 0.70835 0.90946 0.94235 0.89309 0.87937 0.89432 0.84891 0.83220 0.83374 0.86028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.61 13.96 21.45 0.30 -53.32 16 2 C 0.04 2.35 5.25 84.66 0.44 2.79 16 3 Si 0.91 40.92 25.95 68.60 1.78 42.70 16 4 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 5 H -0.29 -12.67 7.11 99.48 0.71 -11.96 16 6 H -0.23 -9.28 6.14 99.48 0.61 -8.67 16 7 C -0.48 -25.42 5.68 25.60 0.15 -25.27 16 8 H 0.04 2.23 8.05 -2.91 -0.02 2.20 16 9 C 0.02 1.09 1.10 -13.04 -0.01 1.08 16 10 H 0.08 3.35 5.25 -2.38 -0.01 3.34 16 11 C 0.53 24.22 6.98 87.66 0.61 24.83 16 12 O -0.59 -29.17 14.84 -3.02 -0.04 -29.21 16 13 N -0.60 -23.04 2.98 -819.02 -2.44 -25.48 16 14 C 0.11 3.50 6.43 86.36 0.56 4.06 16 15 C -0.11 -3.20 5.35 30.68 0.16 -3.04 16 16 C 0.01 0.38 2.61 -11.50 -0.03 0.35 16 17 C 0.23 6.81 6.65 138.63 0.92 7.73 16 18 N -0.57 -14.56 11.19 -191.81 -2.15 -16.70 16 19 C 0.27 4.43 13.13 180.36 2.37 6.80 16 20 N -0.48 -9.37 7.45 -60.49 -0.45 -9.82 16 21 H 0.46 5.29 8.96 -213.10 -1.91 3.38 16 22 N -0.35 -10.95 12.80 -51.34 -0.66 -11.61 16 23 C -0.10 -3.60 5.34 30.65 0.16 -3.44 16 24 C 0.10 3.59 5.88 86.34 0.51 4.10 16 25 C -0.06 -2.60 3.59 -19.87 -0.07 -2.67 16 26 C -0.10 -4.68 8.31 22.27 0.19 -4.49 16 27 C -0.13 -5.10 10.05 22.27 0.22 -4.87 16 28 C -0.14 -4.46 10.05 22.27 0.22 -4.24 16 29 C -0.13 -4.22 10.05 22.27 0.22 -4.00 16 30 C -0.15 -6.10 8.57 22.27 0.19 -5.91 16 31 H 0.27 14.71 8.31 -92.71 -0.77 13.94 16 32 H 0.08 2.61 7.01 -2.39 -0.02 2.59 16 33 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 34 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 36 H 0.12 2.90 8.14 -2.39 -0.02 2.88 16 37 H 0.28 0.78 8.06 -2.91 -0.02 0.76 16 38 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 39 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 41 H 0.10 4.34 4.39 -2.39 -0.01 4.33 16 42 H 0.09 4.40 7.89 -2.91 -0.02 4.38 16 43 H 0.13 4.27 8.06 -2.91 -0.02 4.24 16 44 H 0.15 3.64 8.06 -2.91 -0.02 3.62 16 45 H 0.15 3.77 8.06 -2.91 -0.02 3.75 16 46 H 0.12 4.38 7.94 -2.91 -0.02 4.35 16 Total: -1.00 -77.69 371.54 2.16 -75.53 By element: Atomic # 1 Polarization: 35.10 SS G_CDS: -0.99 Total: 34.10 kcal Atomic # 6 Polarization: -13.00 SS G_CDS: 6.81 Total: -6.19 kcal Atomic # 7 Polarization: -111.53 SS G_CDS: -5.39 Total: -116.92 kcal Atomic # 8 Polarization: -29.17 SS G_CDS: -0.04 Total: -29.21 kcal Atomic # 14 Polarization: 40.92 SS G_CDS: 1.78 Total: 42.70 kcal Total: -77.69 2.16 -75.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362999738.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.842 kcal (2) G-P(sol) polarization free energy of solvation -77.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.528 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds