Wall clock time and date at job start Sat Apr 11 2020 06:06:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00339 * 2 1 4 4 H 1.48495 * 109.47211 * 90.00152 * 3 2 1 5 5 H 1.48504 * 109.47138 * 210.00217 * 3 2 1 6 6 H 1.48500 * 109.46868 * 329.99956 * 3 2 1 7 7 C 1.37880 * 119.99689 * 180.27774 * 2 1 3 8 8 H 1.08003 * 119.99929 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00095 * 359.97438 * 7 2 1 10 10 H 1.09003 * 109.49632 * 300.06729 * 9 7 2 11 11 C 1.53038 * 109.49868 * 180.02562 * 9 7 2 12 12 C 1.53039 * 109.54042 * 178.68423 * 11 9 7 13 13 C 1.53191 * 109.31010 * 61.36236 * 12 11 9 14 14 N 1.46917 * 108.77845 * 305.36783 * 13 12 11 15 15 C 1.34782 * 120.63248 * 233.58921 * 14 13 12 16 16 O 1.21546 * 120.00187 * 174.16742 * 15 14 13 17 17 C 1.47846 * 119.99801 * 354.16361 * 15 14 13 18 18 C 1.39575 * 120.14565 * 318.69329 * 17 15 14 19 19 C 1.37956 * 119.85149 * 179.78621 * 18 17 15 20 20 C 1.38355 * 120.14679 * 0.48956 * 19 18 17 21 21 C 1.50706 * 119.85406 * 179.76174 * 20 19 18 22 22 C 1.50696 * 109.47073 * 269.97570 * 21 20 19 23 23 N 1.33238 * 125.52992 * 269.69356 * 22 21 20 24 24 C 1.30833 * 109.82918 * 179.85584 * 23 22 21 25 25 N 1.34432 * 108.07787 * 0.40576 * 24 23 22 26 26 H 0.96996 * 126.82501 * 179.78715 * 25 24 23 27 27 N 1.30717 * 125.52532 * 90.00128 * 22 21 20 28 28 C 1.38363 * 120.29099 * 359.74125 * 20 19 18 29 29 C 1.37953 * 120.14254 * 0.02562 * 28 20 19 30 30 C 1.46921 * 118.74140 * 53.60702 * 14 13 12 31 31 H 0.96997 * 119.99548 * 359.72016 * 1 2 3 32 32 H 1.09006 * 109.45809 * 298.70600 * 11 9 7 33 33 H 1.08998 * 109.46240 * 58.66042 * 11 9 7 34 34 H 1.08993 * 109.49859 * 181.31632 * 12 11 9 35 35 H 1.09002 * 109.49367 * 301.38148 * 12 11 9 36 36 H 1.09004 * 109.58836 * 65.15856 * 13 12 11 37 37 H 1.09003 * 109.58624 * 185.57718 * 13 12 11 38 38 H 1.08005 * 120.07414 * 0.02562 * 18 17 15 39 39 H 1.08003 * 119.92871 * 180.23201 * 19 18 17 40 40 H 1.08993 * 109.47027 * 29.98308 * 21 20 19 41 41 H 1.08997 * 109.46730 * 149.98113 * 21 20 19 42 42 H 1.08004 * 125.96431 * 180.19299 * 24 23 22 43 43 H 1.08001 * 119.92753 * 179.97438 * 28 20 19 44 44 H 1.08007 * 120.06752 * 179.97438 * 29 28 20 45 45 H 1.09004 * 109.59361 * 186.60307 * 30 14 13 46 46 H 1.09001 * 109.58398 * 66.18013 * 30 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 1.4000 5 1 3.5468 1.4400 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0045 -1.1941 -0.0058 8 1 3.0845 -1.1941 -0.0062 9 6 1.2509 -2.4992 -0.0115 10 1 0.6235 -2.5609 0.8777 11 6 2.2448 -3.6629 -0.0167 12 6 1.4808 -4.9887 0.0106 13 6 0.6055 -5.0948 -1.2421 14 7 -0.2530 -3.9052 -1.3214 15 6 -1.5894 -4.0296 -1.4444 16 8 -2.2981 -3.0430 -1.4025 17 6 -2.1933 -5.3662 -1.6305 18 6 -1.5901 -6.2960 -2.4789 19 6 -2.1564 -7.5430 -2.6447 20 6 -3.3251 -7.8693 -1.9799 21 6 -3.9410 -9.2316 -2.1699 22 6 -4.9069 -9.1894 -3.3258 23 7 -6.2059 -8.9057 -3.2395 24 6 -6.7505 -8.9530 -4.4281 25 7 -5.7933 -9.2826 -5.3127 26 1 -5.9004 -9.3953 -6.2701 27 7 -4.6074 -9.4306 -4.5752 28 6 -3.9307 -6.9505 -1.1411 29 6 -3.3721 -5.7018 -0.9629 30 6 0.3730 -2.5772 -1.2645 31 1 -0.4849 0.8401 0.0041 32 1 2.8560 -3.6144 -0.9179 33 1 2.8871 -3.5958 0.8614 34 1 2.1894 -5.8166 0.0306 35 1 0.8510 -5.0273 0.8995 36 1 1.2393 -5.1478 -2.1274 37 1 -0.0144 -5.9893 -1.1800 38 1 -0.6800 -6.0411 -3.0016 39 1 -1.6887 -8.2647 -3.2980 40 1 -3.1565 -9.9590 -2.3782 41 1 -4.4723 -9.5198 -1.2629 42 1 -7.7886 -8.7638 -4.6581 43 1 -4.8431 -7.2113 -0.6254 44 1 -3.8461 -4.9854 -0.3081 45 1 -0.4002 -1.8103 -1.2172 46 1 0.9879 -2.4248 -2.1515 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001412327288.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:15 Heat of formation + Delta-G solvation = 73.911308 kcal Electronic energy + Delta-G solvation = -28707.282758 eV Core-core repulsion = 24791.294110 eV Total energy + Delta-G solvation = -3915.988648 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 2.18 seconds Orbital eigenvalues (eV) -42.42519 -40.10254 -38.45637 -36.60148 -34.33703 -33.34994 -32.32332 -31.80676 -31.09337 -30.91478 -29.69807 -27.75213 -25.06279 -24.73854 -23.25372 -22.62168 -22.27475 -21.70217 -20.52221 -19.85866 -18.68312 -18.55881 -17.00663 -16.24365 -16.08384 -15.86789 -15.41612 -15.24007 -14.93274 -14.56669 -14.31146 -14.16776 -14.02042 -13.69021 -13.35177 -13.20006 -12.74184 -12.57093 -12.50243 -12.37968 -12.28269 -11.98062 -11.87455 -11.70534 -11.04701 -10.95213 -10.83408 -10.46844 -10.42599 -10.37914 -10.36898 -10.20815 -10.00648 -9.85965 -9.33271 -9.10006 -8.93481 -8.84502 -8.62827 -8.40708 -7.70881 -5.96963 -4.06060 0.98685 1.29968 1.42447 2.32950 2.56974 3.22518 3.32248 3.39635 3.41881 3.65587 3.82243 4.02205 4.33478 4.44798 4.61640 4.65380 4.84988 4.95617 5.01045 5.23791 5.32326 5.34080 5.39848 5.48412 5.53915 5.65244 5.71876 5.80326 5.88757 6.01597 6.04448 6.08865 6.21567 6.31778 6.34715 6.48793 6.50525 6.63953 6.66016 6.70997 6.87869 6.92656 7.00520 7.18111 7.31574 7.66819 7.73878 7.90019 8.02429 8.27522 8.41273 8.87412 8.98641 9.59464 11.08232 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.023945 B = 0.002284 C = 0.002185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.056660 B =12254.447848 C =12811.580334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.062 3.938 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.274 1.274 6 H -0.286 1.286 7 C -0.521 4.521 8 H 0.058 0.942 9 C 0.040 3.960 10 H 0.029 0.971 11 C -0.111 4.111 12 C -0.134 4.134 13 C 0.100 3.900 14 N -0.599 5.599 15 C 0.544 3.456 16 O -0.531 6.531 17 C -0.111 4.111 18 C -0.093 4.093 19 C -0.114 4.114 20 C -0.076 4.076 21 C 0.013 3.987 22 C 0.237 3.763 23 N -0.538 5.538 24 C 0.261 3.739 25 N -0.486 5.486 26 H 0.441 0.559 27 N -0.311 5.311 28 C -0.107 4.107 29 C -0.071 4.071 30 C 0.112 3.888 31 H 0.263 0.737 32 H 0.049 0.951 33 H 0.051 0.949 34 H 0.059 0.941 35 H 0.060 0.940 36 H 0.061 0.939 37 H 0.080 0.920 38 H 0.130 0.870 39 H 0.127 0.873 40 H 0.098 0.902 41 H 0.103 0.897 42 H 0.222 0.778 43 H 0.130 0.870 44 H 0.132 0.868 45 H 0.123 0.877 46 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.222 -22.491 -8.564 26.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.141 4.141 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.199 1.199 6 H -0.212 1.212 7 C -0.560 4.560 8 H 0.076 0.924 9 C 0.021 3.979 10 H 0.047 0.953 11 C -0.148 4.148 12 C -0.172 4.172 13 C -0.023 4.023 14 N -0.331 5.331 15 C 0.331 3.669 16 O -0.408 6.408 17 C -0.114 4.114 18 C -0.111 4.111 19 C -0.132 4.132 20 C -0.078 4.078 21 C -0.026 4.026 22 C -0.045 4.045 23 N -0.266 5.266 24 C -0.038 4.038 25 N -0.204 5.204 26 H 0.287 0.713 27 N -0.141 5.141 28 C -0.125 4.125 29 C -0.090 4.090 30 C -0.008 4.008 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.098 0.902 38 H 0.148 0.852 39 H 0.144 0.856 40 H 0.116 0.884 41 H 0.121 0.879 42 H 0.239 0.761 43 H 0.148 0.852 44 H 0.150 0.850 45 H 0.141 0.859 46 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -10.191 -21.925 -8.444 25.609 hybrid contribution 0.122 0.927 -0.866 1.274 sum -10.069 -20.998 -9.309 25.079 Atomic orbital electron populations 1.69896 1.05718 1.26815 1.49277 1.25066 0.94882 0.99255 0.94890 0.86597 0.79798 0.83546 0.78083 1.20689 1.19928 1.21197 1.21078 0.92884 0.90129 1.51861 0.92371 1.18962 0.92633 0.92299 0.94013 0.95278 1.21632 0.98543 0.94136 1.00535 1.21949 0.98598 0.99029 0.97614 1.21945 0.93542 0.88444 0.98360 1.48422 1.05102 1.09065 1.70470 1.18345 0.82595 0.88099 0.77830 1.90803 1.60662 1.38962 1.50369 1.20236 0.96737 0.94842 0.99601 1.21376 0.99397 0.92773 0.97575 1.20940 0.95810 0.96741 0.99695 1.19624 0.95396 0.95002 0.97736 1.18895 0.95086 0.95323 0.93333 1.24093 0.91170 0.96614 0.92659 1.70422 1.07861 1.24420 1.23911 1.26127 0.97411 0.95337 0.84902 1.48134 1.06593 1.54041 1.11640 0.71322 1.78014 1.04484 1.26422 1.05132 1.20998 0.99751 0.93022 0.98749 1.21225 0.93617 0.96192 0.97991 1.22314 0.98706 0.81197 0.98588 0.92652 0.93219 0.93027 0.92209 0.92137 0.92102 0.90158 0.85168 0.85555 0.88356 0.87858 0.76143 0.85229 0.85021 0.85914 0.93881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.02 11.40 55.43 0.63 -25.39 16 2 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 3 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 5 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 6 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 7 C -0.52 -14.24 8.56 -34.44 -0.29 -14.54 16 8 H 0.06 1.55 7.74 -52.48 -0.41 1.15 16 9 C 0.04 1.00 2.25 -91.65 -0.21 0.80 16 10 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 11 C -0.11 -2.23 5.11 -26.69 -0.14 -2.37 16 12 C -0.13 -2.21 6.08 -26.61 -0.16 -2.38 16 13 C 0.10 1.62 4.92 -3.72 -0.02 1.60 16 14 N -0.60 -12.37 2.97 -173.89 -0.52 -12.89 16 15 C 0.54 11.55 7.31 -12.33 -0.09 11.46 16 16 O -0.53 -13.63 16.36 5.32 0.09 -13.54 16 17 C -0.11 -1.84 5.09 -104.97 -0.53 -2.38 16 18 C -0.09 -1.26 7.40 -39.19 -0.29 -1.55 16 19 C -0.11 -1.30 9.68 -39.64 -0.38 -1.69 16 20 C -0.08 -0.85 5.12 -104.53 -0.54 -1.38 16 21 C 0.01 0.12 5.97 -29.03 -0.17 -0.05 16 22 C 0.24 2.52 7.38 -156.86 -1.16 1.37 16 23 N -0.54 -5.56 11.19 -11.98 -0.13 -5.69 16 24 C 0.26 1.73 13.13 -90.65 -1.19 0.54 16 25 N -0.49 -3.30 7.45 29.53 0.22 -3.08 16 26 H 0.44 1.34 8.96 -182.34 -1.63 -0.30 16 27 N -0.31 -3.27 12.80 32.42 0.41 -2.86 16 28 C -0.11 -1.31 9.68 -39.64 -0.38 -1.69 16 29 C -0.07 -1.08 9.65 -39.19 -0.38 -1.45 16 30 C 0.11 2.76 5.41 -3.71 -0.02 2.74 16 31 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 32 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.06 0.89 8.13 -51.93 -0.42 0.47 16 37 H 0.08 1.12 4.80 -51.93 -0.25 0.87 16 38 H 0.13 1.64 6.69 -52.48 -0.35 1.29 16 39 H 0.13 1.18 8.06 -52.48 -0.42 0.76 16 40 H 0.10 0.71 8.08 -51.93 -0.42 0.29 16 41 H 0.10 0.78 8.08 -51.93 -0.42 0.36 16 42 H 0.22 0.34 8.06 -52.48 -0.42 -0.08 16 43 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 44 H 0.13 2.04 8.06 -52.48 -0.42 1.61 16 45 H 0.12 3.54 5.12 -51.93 -0.27 3.27 16 46 H 0.04 1.05 8.14 -51.93 -0.42 0.62 16 LS Contribution 378.06 15.07 5.70 5.70 Total: -1.00 -36.34 378.06 -12.20 -48.53 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: -7.53 Total: 2.10 kcal Atomic # 6 Polarization: -3.28 SS G_CDS: -6.05 Total: -9.33 kcal Atomic # 7 Polarization: -50.52 SS G_CDS: 0.62 Total: -49.90 kcal Atomic # 8 Polarization: -13.63 SS G_CDS: 0.09 Total: -13.54 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -36.34 -12.20 -48.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412327288.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.446 kcal (2) G-P(sol) polarization free energy of solvation -36.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.535 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.18 seconds