Wall clock time and date at job start Sat Apr 11 2020 06:06:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00339 * 2 1 4 4 H 1.48495 * 109.47211 * 90.00152 * 3 2 1 5 5 H 1.48504 * 109.47138 * 210.00217 * 3 2 1 6 6 H 1.48500 * 109.46868 * 329.99956 * 3 2 1 7 7 C 1.37880 * 119.99689 * 180.27774 * 2 1 3 8 8 H 1.08003 * 119.99929 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00095 * 359.97438 * 7 2 1 10 10 H 1.09003 * 109.49632 * 300.06729 * 9 7 2 11 11 C 1.53038 * 109.49868 * 180.02562 * 9 7 2 12 12 C 1.53039 * 109.54042 * 178.68423 * 11 9 7 13 13 C 1.53191 * 109.31010 * 61.36236 * 12 11 9 14 14 N 1.46917 * 108.77845 * 305.36783 * 13 12 11 15 15 C 1.34782 * 120.63248 * 233.58921 * 14 13 12 16 16 O 1.21546 * 120.00187 * 174.16742 * 15 14 13 17 17 C 1.47846 * 119.99801 * 354.16361 * 15 14 13 18 18 C 1.39575 * 120.14565 * 318.69329 * 17 15 14 19 19 C 1.37956 * 119.85149 * 179.78621 * 18 17 15 20 20 C 1.38355 * 120.14679 * 0.48956 * 19 18 17 21 21 C 1.50706 * 119.85406 * 179.76174 * 20 19 18 22 22 C 1.50696 * 109.47073 * 269.97570 * 21 20 19 23 23 N 1.33238 * 125.52992 * 269.69356 * 22 21 20 24 24 C 1.30833 * 109.82918 * 179.85584 * 23 22 21 25 25 N 1.34432 * 108.07787 * 0.40576 * 24 23 22 26 26 H 0.96996 * 126.82501 * 179.78715 * 25 24 23 27 27 N 1.30717 * 125.52532 * 90.00128 * 22 21 20 28 28 C 1.38363 * 120.29099 * 359.74125 * 20 19 18 29 29 C 1.37953 * 120.14254 * 0.02562 * 28 20 19 30 30 C 1.46921 * 118.74140 * 53.60702 * 14 13 12 31 31 H 0.96997 * 119.99548 * 359.72016 * 1 2 3 32 32 H 1.09006 * 109.45809 * 298.70600 * 11 9 7 33 33 H 1.08998 * 109.46240 * 58.66042 * 11 9 7 34 34 H 1.08993 * 109.49859 * 181.31632 * 12 11 9 35 35 H 1.09002 * 109.49367 * 301.38148 * 12 11 9 36 36 H 1.09004 * 109.58836 * 65.15856 * 13 12 11 37 37 H 1.09003 * 109.58624 * 185.57718 * 13 12 11 38 38 H 1.08005 * 120.07414 * 0.02562 * 18 17 15 39 39 H 1.08003 * 119.92871 * 180.23201 * 19 18 17 40 40 H 1.08993 * 109.47027 * 29.98308 * 21 20 19 41 41 H 1.08997 * 109.46730 * 149.98113 * 21 20 19 42 42 H 1.08004 * 125.96431 * 180.19299 * 24 23 22 43 43 H 1.08001 * 119.92753 * 179.97438 * 28 20 19 44 44 H 1.08007 * 120.06752 * 179.97438 * 29 28 20 45 45 H 1.09004 * 109.59361 * 186.60307 * 30 14 13 46 46 H 1.09001 * 109.58398 * 66.18013 * 30 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 1.4000 5 1 3.5468 1.4400 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0045 -1.1941 -0.0058 8 1 3.0845 -1.1941 -0.0062 9 6 1.2509 -2.4992 -0.0115 10 1 0.6235 -2.5609 0.8777 11 6 2.2448 -3.6629 -0.0167 12 6 1.4808 -4.9887 0.0106 13 6 0.6055 -5.0948 -1.2421 14 7 -0.2530 -3.9052 -1.3214 15 6 -1.5894 -4.0296 -1.4444 16 8 -2.2981 -3.0430 -1.4025 17 6 -2.1933 -5.3662 -1.6305 18 6 -1.5901 -6.2960 -2.4789 19 6 -2.1564 -7.5430 -2.6447 20 6 -3.3251 -7.8693 -1.9799 21 6 -3.9410 -9.2316 -2.1699 22 6 -4.9069 -9.1894 -3.3258 23 7 -6.2059 -8.9057 -3.2395 24 6 -6.7505 -8.9530 -4.4281 25 7 -5.7933 -9.2826 -5.3127 26 1 -5.9004 -9.3953 -6.2701 27 7 -4.6074 -9.4306 -4.5752 28 6 -3.9307 -6.9505 -1.1411 29 6 -3.3721 -5.7018 -0.9629 30 6 0.3730 -2.5772 -1.2645 31 1 -0.4849 0.8401 0.0041 32 1 2.8560 -3.6144 -0.9179 33 1 2.8871 -3.5958 0.8614 34 1 2.1894 -5.8166 0.0306 35 1 0.8510 -5.0273 0.8995 36 1 1.2393 -5.1478 -2.1274 37 1 -0.0144 -5.9893 -1.1800 38 1 -0.6800 -6.0411 -3.0016 39 1 -1.6887 -8.2647 -3.2980 40 1 -3.1565 -9.9590 -2.3782 41 1 -4.4723 -9.5198 -1.2629 42 1 -7.7886 -8.7638 -4.6581 43 1 -4.8431 -7.2113 -0.6254 44 1 -3.8461 -4.9854 -0.3081 45 1 -0.4002 -1.8103 -1.2172 46 1 0.9879 -2.4248 -2.1515 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001412327288.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:13 Heat of formation + Delta-G solvation = 51.433044 kcal Electronic energy + Delta-G solvation = -28708.257488 eV Core-core repulsion = 24791.294110 eV Total energy + Delta-G solvation = -3916.963378 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -43.01476 -41.50848 -39.73257 -38.31257 -35.52881 -34.91161 -33.54701 -32.96658 -32.14178 -31.86106 -31.37748 -28.75906 -27.01644 -26.24372 -24.01728 -23.76126 -23.33997 -23.18148 -21.58351 -21.07991 -20.13385 -19.20833 -18.69214 -17.98514 -17.36521 -16.86731 -16.55095 -16.48102 -16.12140 -15.94833 -15.51237 -15.41602 -15.21010 -14.93382 -14.65707 -14.51536 -14.39691 -14.27514 -13.86841 -13.49205 -13.29954 -13.12228 -12.96665 -12.91423 -12.80059 -12.64702 -12.29382 -12.23057 -11.96556 -11.83177 -11.63236 -11.19217 -11.05238 -11.00480 -10.96499 -10.74351 -10.60468 -10.53344 -9.91759 -9.77184 -9.41676 -8.11720 -6.29644 -0.10276 0.40473 0.71959 1.39343 1.40360 1.51415 1.72049 1.90050 1.95803 2.17062 2.41408 2.74844 3.16040 3.37090 3.53407 3.71823 3.88008 3.92061 3.98048 4.09205 4.16290 4.25334 4.32605 4.42551 4.44371 4.56593 4.71906 4.72327 4.76729 4.79815 4.83147 4.87465 5.07372 5.08580 5.23759 5.25594 5.27109 5.28719 5.34253 5.42922 5.44384 5.53468 5.55707 5.63203 5.87521 5.92501 5.98147 6.28764 6.31107 6.60859 6.83793 7.15549 7.23804 7.40884 8.91782 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.023945 B = 0.002284 C = 0.002185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.056660 B =12254.447848 C =12811.580334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.006 3.994 3 Si 0.960 3.040 4 H -0.275 1.275 5 H -0.260 1.260 6 H -0.288 1.288 7 C -0.534 4.534 8 H 0.065 0.935 9 C 0.038 3.962 10 H -0.018 1.018 11 C -0.105 4.105 12 C -0.127 4.127 13 C 0.096 3.904 14 N -0.601 5.601 15 C 0.537 3.463 16 O -0.594 6.594 17 C -0.135 4.135 18 C -0.088 4.088 19 C -0.103 4.103 20 C -0.060 4.060 21 C 0.015 3.985 22 C 0.223 3.777 23 N -0.577 5.577 24 C 0.271 3.729 25 N -0.479 5.479 26 H 0.456 0.544 27 N -0.340 5.340 28 C -0.102 4.102 29 C -0.087 4.087 30 C 0.123 3.877 31 H 0.259 0.741 32 H 0.061 0.939 33 H 0.053 0.947 34 H 0.107 0.893 35 H 0.045 0.955 36 H 0.087 0.913 37 H 0.109 0.891 38 H 0.143 0.857 39 H 0.158 0.842 40 H 0.120 0.880 41 H 0.117 0.883 42 H 0.267 0.733 43 H 0.148 0.852 44 H 0.112 0.888 45 H 0.075 0.925 46 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.404 -26.036 -10.062 29.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.193 4.193 3 Si 0.785 3.215 4 H -0.201 1.201 5 H -0.184 1.184 6 H -0.214 1.214 7 C -0.573 4.573 8 H 0.083 0.917 9 C 0.019 3.981 10 H 0.000 1.000 11 C -0.142 4.142 12 C -0.165 4.165 13 C -0.025 4.025 14 N -0.331 5.331 15 C 0.326 3.674 16 O -0.476 6.476 17 C -0.138 4.138 18 C -0.107 4.107 19 C -0.121 4.121 20 C -0.061 4.061 21 C -0.025 4.025 22 C -0.060 4.060 23 N -0.306 5.306 24 C -0.027 4.027 25 N -0.198 5.198 26 H 0.305 0.695 27 N -0.170 5.170 28 C -0.120 4.120 29 C -0.106 4.106 30 C 0.001 3.999 31 H 0.068 0.932 32 H 0.079 0.921 33 H 0.071 0.929 34 H 0.126 0.874 35 H 0.064 0.936 36 H 0.105 0.895 37 H 0.127 0.873 38 H 0.160 0.840 39 H 0.176 0.824 40 H 0.138 0.862 41 H 0.135 0.865 42 H 0.282 0.718 43 H 0.166 0.834 44 H 0.130 0.870 45 H 0.093 0.907 46 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -9.334 -25.528 -9.964 28.949 hybrid contribution -0.245 1.928 -0.451 1.995 sum -9.579 -23.600 -10.415 27.517 Atomic orbital electron populations 1.70115 1.07558 1.27256 1.50670 1.25955 0.95556 1.03133 0.94619 0.85525 0.78786 0.78910 0.78278 1.20069 1.18385 1.21423 1.21525 0.93347 0.91378 1.51043 0.91726 1.18902 0.93097 0.94066 0.92043 0.99951 1.21522 0.97598 0.93988 1.01136 1.21929 0.98954 0.98409 0.97200 1.22319 0.93564 0.87317 0.99297 1.48443 1.05704 1.09068 1.69915 1.19173 0.82393 0.89467 0.76334 1.90752 1.62052 1.41576 1.53258 1.19885 0.98085 0.93106 1.02761 1.21472 0.99752 0.92819 0.96646 1.21258 0.95511 0.96115 0.99232 1.19928 0.94739 0.95665 0.95795 1.18995 0.95650 0.94050 0.93768 1.24304 0.91664 0.97041 0.92997 1.70414 1.08159 1.26047 1.25948 1.26984 0.98810 0.93083 0.83858 1.48101 1.05795 1.53412 1.12479 0.69505 1.77906 1.06404 1.27316 1.05415 1.21154 1.00136 0.91803 0.98894 1.21193 0.93641 0.97339 0.98442 1.21754 0.97203 0.82648 0.98258 0.93181 0.92074 0.92853 0.87445 0.93591 0.89456 0.87349 0.83968 0.82449 0.86205 0.86495 0.71792 0.83429 0.86999 0.90705 0.93986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.66 11.40 21.45 0.24 -57.42 16 2 C 0.01 0.38 5.30 84.66 0.45 0.82 16 3 Si 0.96 45.22 29.54 68.60 2.03 47.24 16 4 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 5 H -0.26 -11.53 7.11 99.48 0.71 -10.83 16 6 H -0.29 -13.57 7.11 99.48 0.71 -12.87 16 7 C -0.53 -30.10 8.56 25.60 0.22 -29.88 16 8 H 0.06 3.47 7.74 -2.91 -0.02 3.44 16 9 C 0.04 1.99 2.25 -11.46 -0.03 1.97 16 10 H -0.02 -1.07 8.14 -2.39 -0.02 -1.09 16 11 C -0.10 -4.14 5.11 30.62 0.16 -3.99 16 12 C -0.13 -3.94 6.08 30.67 0.19 -3.75 16 13 C 0.10 2.91 4.92 86.36 0.42 3.34 16 14 N -0.60 -25.64 2.97 -822.33 -2.44 -28.08 16 15 C 0.54 24.11 7.31 86.79 0.63 24.74 16 16 O -0.59 -33.33 16.36 -3.86 -0.06 -33.40 16 17 C -0.14 -4.55 5.09 -20.09 -0.10 -4.65 16 18 C -0.09 -2.21 7.40 22.53 0.17 -2.05 16 19 C -0.10 -2.00 9.68 22.23 0.22 -1.79 16 20 C -0.06 -1.15 5.12 -19.80 -0.10 -1.26 16 21 C 0.01 0.21 5.97 29.10 0.17 0.39 16 22 C 0.22 4.14 7.38 138.63 1.02 5.16 16 23 N -0.58 -10.52 11.19 -191.80 -2.15 -12.67 16 24 C 0.27 2.78 13.13 180.36 2.37 5.15 16 25 N -0.48 -5.19 7.45 -60.48 -0.45 -5.64 16 26 H 0.46 1.55 8.96 -213.10 -1.91 -0.36 16 27 N -0.34 -6.24 12.80 -51.34 -0.66 -6.90 16 28 C -0.10 -2.35 9.68 22.23 0.22 -2.14 16 29 C -0.09 -2.70 9.65 22.52 0.22 -2.48 16 30 C 0.12 6.43 5.41 86.36 0.47 6.90 16 31 H 0.26 15.69 8.31 -92.71 -0.77 14.92 16 32 H 0.06 2.27 8.14 -2.38 -0.02 2.26 16 33 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 34 H 0.11 2.40 8.14 -2.39 -0.02 2.38 16 35 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.09 2.24 8.13 -2.38 -0.02 2.22 16 37 H 0.11 2.72 4.80 -2.39 -0.01 2.71 16 38 H 0.14 3.18 6.69 -2.91 -0.02 3.16 16 39 H 0.16 2.15 8.06 -2.91 -0.02 2.13 16 40 H 0.12 1.23 8.08 -2.39 -0.02 1.21 16 41 H 0.12 1.38 8.08 -2.39 -0.02 1.36 16 42 H 0.27 -0.21 8.06 -2.91 -0.02 -0.23 16 43 H 0.15 2.82 8.06 -2.91 -0.02 2.80 16 44 H 0.11 3.80 8.06 -2.91 -0.02 3.77 16 45 H 0.07 4.68 5.12 -2.38 -0.01 4.66 16 46 H 0.04 2.13 8.14 -2.39 -0.02 2.11 16 Total: -1.00 -87.24 378.06 2.30 -84.94 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: -0.89 Total: 15.44 kcal Atomic # 6 Polarization: -10.21 SS G_CDS: 6.69 Total: -3.52 kcal Atomic # 7 Polarization: -105.25 SS G_CDS: -5.45 Total: -110.71 kcal Atomic # 8 Polarization: -33.33 SS G_CDS: -0.06 Total: -33.40 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.24 kcal Total: -87.24 2.30 -84.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412327288.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.372 kcal (2) G-P(sol) polarization free energy of solvation -87.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.939 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds